Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0004852

Physical Location & Seq

Genomic Coordinates Forward (+)

45615926 .. 45617698

Gene Structure 1773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025408

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGTTAAATGGAGAAATCCCTTCAGATTTGTTTGCTAAACTCAAGAATATGCAGAAAATGTACATGTCAAGAAACAAGCTTTCTGGGAGAATTCCAGTGACCCTCTCCAATCTTTCACAGCTGATACTGTTTGATGTTAGTTTGAATAATTTAGAGGGGGAAGTTCCTGCAGGATTGGGCAAGCTAGAGAACCTTGAGAATTTCTACTTACATTCCAACAACTTGGGTGGCGGCTCTGGTAATTCTTCTCTCAGTTTCTTAACGGCTCTAACTAACTGTTCATATCTGCAAAAACTACAGTTGGGTTCGTGTTTGTTCACTGGAAATCTACCATCTTCAATAGGTGACCTTTCAAAAGACCTCTATTACTTGAATCTTTTTGATAACCACATTACAGGAAGTATACCAGATAGTCTCGGAAACTTAAGCGGCCTCGTAACCTTGTACTTGTCGTACAACCGTTTGGAAGGAAAAATTCCATCTTCTCTTGGCAAGCTTTCGAATTTGCTGAGGTTATACTTGGGGAACAACAGAATTATTGGGCCAATGCCAGATGACTTAGGGATGATGTCTAACCTTGGTGTACTAGAATTTGGCAACAATTCGATTGGTGGGCCAATTCCGCCTTCACTTGGTAATCTCTCACAGCTGAGATATCTTTACCTGTCTAGAAATCGCCTATCAGGAAAGTTTCCAATTGAGCTTACTCAATGTTCTCTTATCATGCTGCTTGATCTATCTTTCAACAGCTTACAAGGCTCTGTTCCTGTACAGATTGACCGTTTTTCCAGTTTAGCTCTCTCTCTTAATCTTTCGAACAATAACTTTGAAGGACAGTTGCCTGCAAGCATTGGAAAGCTGGTATTTGTACAGGCAATTGACTTGTTTGACAACCAGTTTTCTGGTTCCATACCTACATTGATTGGAAGCTGCATATCTTTGGCAAAACGGGATTCAAAACCAGAACACCGTGAACACGGAATGCTAAGAGTAATGGGATCACCAAGCCATCATGGAAGTCGAACTTTCACCCAAAGGGAACTTGAAATTGCAACAGTGAAGGTTCTACATGGTGACAGTATTCAGAGTTACAAAAGCTTTAAGAGGGAATGCCAAATCATGTCCGAAATTAAGCACTGGAATCTTGTAAGAATGGTAGGATATACCTGGAACACACAGTTCAAGGCTCTTATTCTTGAATATGTAGGAAATGGTAACTTGGCAGAGCATCTTTATCCTGGTGGACTAGGGGAAGAGAATCCCACAGAGTCAGCAAAGGAAGAATCCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009960 GO:0010154 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

431

Amino Acids

47.31

Weight (kDa)

6.8

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	83 - 222	4.1e-13	Leucine-rich repeat region
LRR_8	PF13855	121 - 179	9.3e-08	Leucine rich repeat
LRR_8	PF13855	168 - 227	3.2e-06	Leucine rich repeat
Pkinase	PF00069	347 - 415	5.7e-06	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	348 - 411	1.4e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004852)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45020 FvH4_3g45040 FvH4_3g45051 FvH4_3g45051 FvH4_4g04731 FvH4_4g08081 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850
rosa_chinensis	RchiOBHm_Chr1g0327511 RchiOBHm_Chr2g0145621 RchiOBHm_Chr5g0082901
rosa_laevigata	RLG00000025408
rosa_multiflora	Rmu_sc0004031.1_g000014 Rmu_sc0007172.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001500 Rroxscaffold_2G00154430 Rroxscaffold_6G00424730
rosa_rugosa	Rorug05G0480700 Rorug05G0480800 Rorug05G0480900 Rorug05G0481200 Rorug05G0481300 Rorug05G0481400 Rorug05G0481500
rosa_samantha	Rh5BG558000 Rh5DG566600
rosa_wichuraiana	Rw5G049760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	403
AciI	CCGC	3 cut(s)	231, 429, 623
AclWI	GGATC	1 cut(s)	1006
AcsI	RAATTY	5 cut(s)	90, 199, 474, 502, 590
AcuI	CTGAAG	1 cut(s)	6
AfaI	GTAC	6 cut(s)	62, 446, 455, 585, 771, 870
AfiI	CCNNNNNNNGG	1 cut(s)	632
AflII	CTTAAG	1 cut(s)	424
AflIII	ACRYGT	1 cut(s)	63
AjnI	CCWGG	2 cut(s)	1166, 1237
AjuI	GAANNNNNNNTTGG	2 cut(s)	610, 642
Alw26I	GTCTC	1 cut(s)	419
AlwI	GGATC	1 cut(s)	1006
AoxI	GGCC	3 cut(s)	430, 542, 614
ApeKI	GCWGC	2 cut(s)	727, 930
ApoI	RAATTY	5 cut(s)	90, 199, 474, 502, 590
AspS9I	GGNCC	2 cut(s)	542, 614
AsuHPI	GGTGA	4 cut(s)	356, 993, 1021, 1085
AsuII	TTCGAA	2 cut(s)	500, 815
BbvCI	CCTCAGC	1 cut(s)	509
BbvI	GCAGC	2 cut(s)	714, 917
BccI	CCATC	3 cut(s)	340, 487, 1017
BceAI	ACGGC	1 cut(s)	279
BciT130I	CCWGG	2 cut(s)	1168, 1239
BcoDI	GTCTC	1 cut(s)	419
BfaI	CTAG	4 cut(s)	185, 587, 669, 1247
BfmI	CTRYAG	2 cut(s)	168, 296
BfrI	CTTAAG	1 cut(s)	424
BisI	GCNGC	4 cut(s)	232, 430, 728, 931
BlsI	GCNGC	4 cut(s)	233, 431, 729, 932
Bme1390I	CCNGG	2 cut(s)	1168, 1239
BmgT120I	GGNCC	2 cut(s)	542, 614
BmiI	GGNNCC	1 cut(s)	907
BmrFI	CCNGG	2 cut(s)	1168, 1239
BmsI	GCATC	1 cut(s)	1237
Bpu10I	CCTNAGC	1 cut(s)	509
Bpu14I	TTCGAA	2 cut(s)	500, 815
BpuEI	CTTGAG	2 cut(s)	26, 215
BsaJI	CCNNGG	1 cut(s)	577
Bsc4I	CCNNNNNNNGG	1 cut(s)	632
Bse1I	ACTGG	5 cut(s)	95, 325, 789, 895, 1142
BseBI	CCWGG	2 cut(s)	1168, 1239
BseDI	CCNNGG	1 cut(s)	577
BseGI	GGATG	1 cut(s)	570
BseLI	CCNNNNNNNGG	1 cut(s)	632
BseMII	CTCAG	3 cut(s)	265, 500, 641
BseNI	ACTGG	5 cut(s)	95, 325, 789, 895, 1142
BseXI	GCAGC	2 cut(s)	714, 917
BshFI	GGCC	3 cut(s)	432, 544, 616
BslI	CCNNNNNNNGG	1 cut(s)	632
BsmAI	GTCTC	1 cut(s)	419
BsmI	GAATGC	2 cut(s)	987, 1115
BsnI	GGCC	3 cut(s)	432, 544, 616
Bsp119I	TTCGAA	2 cut(s)	500, 815
Bsp1407I	TGTACA	3 cut(s)	60, 769, 868
Bsp143I	GATC	2 cut(s)	733, 998
BspACI	CCGC	3 cut(s)	231, 429, 623
BspANI	GGCC	3 cut(s)	432, 544, 616
BspCNI	CTCAG	3 cut(s)	264, 501, 642
BspLI	GGNNCC	1 cut(s)	907
BspMAI	CTGCAG	1 cut(s)	172
BspPI	GGATC	1 cut(s)	1006
BspT104I	TTCGAA	2 cut(s)	500, 815
BspTI	CTTAAG	1 cut(s)	424
BsrGI	TGTACA	3 cut(s)	60, 769, 868
BsrI	ACTGG	5 cut(s)	95, 325, 789, 895, 1142
BssECI	CCNNGG	1 cut(s)	577
BssMI	GATC	2 cut(s)	733, 998
BssNAI	GTATAC	1 cut(s)	404
BssT1I	CCWWGG	1 cut(s)	577
Bst1107I	GTATAC	1 cut(s)	404
Bst2UI	CCWGG	2 cut(s)	1168, 1239
Bst6I	CTCTTC	1 cut(s)	1248
BstAFI	CTTAAG	1 cut(s)	424
BstAUI	TGTACA	3 cut(s)	60, 769, 868
BstBI	TTCGAA	2 cut(s)	500, 815
BstC8I	GCNNGC	4 cut(s)	182, 494, 843, 847
BstDEI	CTNAG	5 cut(s)	251, 509, 559, 650, 986
BstEII	GGTNACC	1 cut(s)	344
BstF5I	GGATG	1 cut(s)	570
BstKTI	GATC	2 cut(s)	736, 1001
BstMAI	GTCTC	1 cut(s)	419
BstMBI	GATC	2 cut(s)	733, 998
BstMWI	GCNNNNNNNGC	2 cut(s)	622, 756
BstNI	CCWGG	2 cut(s)	1168, 1239
BstNSI	RCATGY	1 cut(s)	67
BstPI	GGTNACC	1 cut(s)	344
BstSCI	CCNGG	2 cut(s)	1166, 1237
BstSFI	CTRYAG	2 cut(s)	168, 296
BstV1I	GCAGC	2 cut(s)	714, 917
BstXI	CCANNNNNNTGG	2 cut(s)	223, 902
BstZ17I	GTATAC	1 cut(s)	404
BsuRI	GGCC	3 cut(s)	432, 544, 616
BtsCI	GGATG	1 cut(s)	570
BtsIMutI	CAGTG	5 cut(s)	102, 318, 1062, 1135, 1288
Cac8I	GCNNGC	4 cut(s)	182, 494, 843, 847
Cfr13I	GGNCC	2 cut(s)	542, 614
Csp6I	GTAC	6 cut(s)	61, 445, 454, 584, 770, 869
CspCI	CAANNNNNGTGG	2 cut(s)	208, 243
CviAII	CATG	5 cut(s)	64, 724, 1013, 1070, 1120
CviQI	GTAC	6 cut(s)	61, 445, 454, 584, 770, 869
DdeI	CTNAG	5 cut(s)	251, 509, 559, 650, 986
DpnI	GATC	2 cut(s)	735, 1000
DpnII	GATC	2 cut(s)	733, 998
Eam1104I	CTCTTC	1 cut(s)	1248
EarI	CTCTTC	1 cut(s)	1248
EciI	GGCGGA	1 cut(s)	612
Eco130I	CCWWGG	1 cut(s)	577
Eco32I	GATATC	1 cut(s)	656
Eco57I	CTGAAG	1 cut(s)	6
Eco91I	GGTNACC	1 cut(s)	344
EcoO65I	GGTNACC	1 cut(s)	344
EcoRI	GAATTC	1 cut(s)	90
EcoRII	CCWGG	2 cut(s)	1166, 1237
EcoRV	GATATC	1 cut(s)	656
EcoT14I	CCWWGG	1 cut(s)	577
ErhI	CCWWGG	1 cut(s)	577
FaeI	CATG	5 cut(s)	67, 727, 1016, 1073, 1123
FalI	AAGNNNNNCTT	2 cut(s)	1009, 1041
FatI	CATG	5 cut(s)	63, 723, 1012, 1069, 1119
FblI	GTMKAC	1 cut(s)	403
Fnu4HI	GCNGC	4 cut(s)	232, 430, 728, 931
FokI	GGATG	1 cut(s)	577
Fsp4HI	GCNGC	4 cut(s)	232, 430, 728, 931
FspBI	CTAG	4 cut(s)	185, 587, 669, 1247
GluI	GCNGC	4 cut(s)	232, 430, 728, 931
HaeIII	GGCC	3 cut(s)	432, 544, 616
Hin1II	CATG	5 cut(s)	67, 727, 1016, 1073, 1123
HindIII	AAGCTT	3 cut(s)	77, 494, 1096
HinfI	GANTC	6 cut(s)	373, 953, 1141, 1258, 1268, 1283
HphI	GGTGA	4 cut(s)	356, 993, 1021, 1085
Hpy166II	GTNNAC	5 cut(s)	318, 404, 584, 974, 1244
Hpy188I	TCNGA	4 cut(s)	25, 419, 1086, 1126
Hpy188III	TCNNGA	5 cut(s)	43, 69, 669, 684, 1196
Hpy8I	GTNNAC	5 cut(s)	318, 404, 584, 974, 1244
HpyAV	CCTTC	5 cut(s)	30, 461, 636, 824, 1054
HpyCH4V	TGCA	6 cut(s)	52, 170, 289, 845, 933, 1052
HpyF10VI	GCNNNNNNNGC	2 cut(s)	622, 756
HpyF3I	CTNAG	5 cut(s)	251, 509, 559, 650, 986
Hsp92II	CATG	5 cut(s)	67, 727, 1016, 1073, 1123
Kzo9I	GATC	2 cut(s)	733, 998
Lsp1109I	GCAGC	2 cut(s)	714, 917
LweI	GCATC	1 cut(s)	1237
MaeI	CTAG	4 cut(s)	185, 587, 669, 1247
MaeIII	GTNAC	6 cut(s)	97, 344, 436, 1073, 1088, 1214
MalI	GATC	2 cut(s)	735, 1000
MboI	GATC	2 cut(s)	733, 998
MboII	GAAGA	5 cut(s)	237, 327, 474, 1265, 1292
MfeI	CAATTG	2 cut(s)	696, 876
MlyI	GAGTC	1 cut(s)	1277
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	6 cut(s)	113, 148, 371, 443, 504, 1098
MseI	TTAA	6 cut(s)	5, 260, 425, 807, 1101, 1131
MspA1I	CMGCKG	2 cut(s)	121, 649
MspCI	CTTAAG	1 cut(s)	424
MspR9I	CCNGG	2 cut(s)	1168, 1239
MunI	CAATTG	2 cut(s)	696, 876
Mva1269I	GAATGC	2 cut(s)	987, 1115
MvaI	CCWGG	2 cut(s)	1168, 1239
MwoI	GCNNNNNNNGC	2 cut(s)	622, 756
NdeII	GATC	2 cut(s)	733, 998
NlaIII	CATG	5 cut(s)	67, 727, 1016, 1073, 1123
NlaIV	GGNNCC	1 cut(s)	907
NmuCI	GTSAC	3 cut(s)	97, 344, 1073
NspI	RCATGY	1 cut(s)	67
NspV	TTCGAA	2 cut(s)	500, 815
PciI	ACATGT	1 cut(s)	63
PctI	GAATGC	2 cut(s)	987, 1115
PfeI	GAWTC	5 cut(s)	373, 953, 1141, 1258, 1283
PkrI	GCNGC	4 cut(s)	233, 431, 729, 932
PleI	GAGTC	1 cut(s)	1276
PpsI	GAGTC	1 cut(s)	1276
PscI	ACATGT	1 cut(s)	63
Psp6I	CCWGG	2 cut(s)	1166, 1237
PspEI	GGTNACC	1 cut(s)	344
PspGI	CCWGG	2 cut(s)	1166, 1237
PspN4I	GGNNCC	1 cut(s)	907
PspPI	GGNCC	2 cut(s)	542, 614
PstI	CTGCAG	1 cut(s)	172
PvuII	CAGCTG	2 cut(s)	121, 649
RsaI	GTAC	6 cut(s)	62, 446, 455, 585, 771, 870
RsaNI	GTAC	6 cut(s)	61, 445, 454, 584, 770, 869
SaqAI	TTAA	6 cut(s)	5, 260, 425, 807, 1101, 1131
SatI	GCNGC	4 cut(s)	232, 430, 728, 931
Sau3AI	GATC	2 cut(s)	733, 998
Sau96I	GGNCC	2 cut(s)	542, 614
SbfI	CCTGCAGG	1 cut(s)	172
SchI	GAGTC	1 cut(s)	1277
ScrFI	CCNGG	2 cut(s)	1168, 1239
SdaI	CCTGCAGG	1 cut(s)	172
SfaNI	GCATC	1 cut(s)	1237
SfcI	CTRYAG	2 cut(s)	168, 296
SfuI	TTCGAA	2 cut(s)	500, 815
SmlI	CTYRAG	3 cut(s)	41, 194, 424
SmoI	CTYRAG	3 cut(s)	41, 194, 424
Sse8387I	CCTGCAGG	1 cut(s)	172
SsiI	CCGC	3 cut(s)	231, 429, 623
SspMI	CTAG	4 cut(s)	185, 587, 669, 1247
StyD4I	CCNGG	2 cut(s)	1166, 1237
StyI	CCWWGG	1 cut(s)	577
TaqI	TCGA	4 cut(s)	500, 605, 815, 1021
TatI	WGTACW	5 cut(s)	60, 444, 583, 769, 868
TauI	GCSGC	2 cut(s)	234, 432
TfiI	GAWTC	5 cut(s)	373, 953, 1141, 1258, 1283
Tru1I	TTAA	6 cut(s)	5, 260, 425, 807, 1101, 1131
Tru9I	TTAA	6 cut(s)	5, 260, 425, 807, 1101, 1131
TscAI	CASTG	4 cut(s)	102, 325, 1062, 1142
TseFI	GTSAC	3 cut(s)	97, 344, 1073
TseI	GCWGC	2 cut(s)	727, 930
Tsp45I	GTSAC	3 cut(s)	97, 344, 1073
TspDTI	ATGAA	1 cut(s)	270
TspGWI	ACGGA	1 cut(s)	993
TspRI	CASTG	4 cut(s)	102, 325, 1062, 1142
Vha464I	CTTAAG	1 cut(s)	424
XapI	RAATTY	5 cut(s)	90, 199, 474, 502, 590
XbaI	TCTAGA	1 cut(s)	668
XceI	RCATGY	1 cut(s)	67
XmiI	GTMKAC	1 cut(s)	403
XspI	CTAG	4 cut(s)	185, 587, 669, 1247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.