Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004031.1

Orthogroup ID

OG0004852

Physical Location & Seq

Genomic Coordinates Reverse (-)

65380 .. 65787

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004031.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atgtgggagtcccacaagttccaacacatgattcaagtggccaaccccgggtttcctattgatgtgacaatatatgacgtgactgttgatgtattgggcaagtctgaagttgttccaccgactatatcagtgtttcacattgtggaacaagttggacttgatagtttggaagctactatcagacagaagccatgtgctatttgttgtgagagccttgatcacgtttatgacacagaagaagggattattcgcttgccctgcttgcacctttttcatgcagattgccttatccagtgtttaaatgatcatgtgcatgtgtgccccctctgcaattacccaccgcctactgtggaacttggtgaaccatccaaaccctcgggcaactggattggcgtgtgttgctcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

135

Amino Acids

14.99

Weight (kDa)

4.87

Isoelectric Point (pI)

37.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004852)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45020 FvH4_3g45040 FvH4_3g45051 FvH4_3g45051 FvH4_4g04731 FvH4_4g08081 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850
rosa_chinensis	RchiOBHm_Chr1g0327511 RchiOBHm_Chr2g0145621 RchiOBHm_Chr5g0082901
rosa_laevigata	RLG00000025408
rosa_multiflora	Rmu_sc0004031.1_g000014 Rmu_sc0007172.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001500 Rroxscaffold_2G00154430 Rroxscaffold_6G00424730
rosa_rugosa	Rorug05G0480700 Rorug05G0480800 Rorug05G0480900 Rorug05G0481200 Rorug05G0481300 Rorug05G0481400 Rorug05G0481500
rosa_samantha	Rh5BG558000 Rh5DG566600
rosa_wichuraiana	Rw5G049760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	341
AcoI	YGGCCR	1 cut(s)	39
AcuI	CTGAAG	1 cut(s)	126
AdeI	CACNNNGTG	1 cut(s)	142
AfiI	CCNNNNNNNGG	1 cut(s)	48
AgsI	TTSAA	1 cut(s)	35
AjiI	CACGTC	1 cut(s)	79
AjuI	GAANNNNNNNTTGG	2 cut(s)	15, 47
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
Ama87I	CYCGRG	2 cut(s)	47, 376
AoxI	GGCC	1 cut(s)	39
Asp700I	GAANNNNTTC	1 cut(s)	111
AsuC2I	CCSGG	2 cut(s)	48, 49
AsuHPI	GGTGA	1 cut(s)	371
AvaI	CYCGRG	2 cut(s)	47, 376
BaeGI	GKGCMC	1 cut(s)	323
BalI	TGGCCA	1 cut(s)	41
BauI	CACGAG	1 cut(s)	403
BccI	CCATC	1 cut(s)	373
BclI	TGATCA	2 cut(s)	217, 304
BcnI	CCSGG	2 cut(s)	48, 49
Bme1390I	CCNGG	2 cut(s)	48, 49
BmeT110I	CYCGRG	2 cut(s)	47, 376
BmgBI	CACGTC	1 cut(s)	79
BmrFI	CCNGG	2 cut(s)	48, 49
BpuMI	CCSGG	2 cut(s)	48, 49
BsaJI	CCNNGG	3 cut(s)	46, 47, 375
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
Bse1I	ACTGG	2 cut(s)	292, 389
BseDI	CCNNGG	3 cut(s)	46, 47, 375
BseGI	GGATG	1 cut(s)	365
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseNI	ACTGG	2 cut(s)	292, 389
BseSI	GKGCMC	1 cut(s)	323
BshFI	GGCC	1 cut(s)	41
BsiHKCI	CYCGRG	2 cut(s)	47, 376
BsiSI	CCGG	1 cut(s)	48
BslI	CCNNNNNNNGG	1 cut(s)	48
BsnI	GGCC	1 cut(s)	41
BsoBI	CYCGRG	2 cut(s)	47, 376
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp143I	GATC	2 cut(s)	217, 304
BspACI	CCGC	1 cut(s)	341
BspANI	GGCC	1 cut(s)	41
BsrI	ACTGG	2 cut(s)	292, 389
BssECI	CCNNGG	3 cut(s)	46, 47, 375
BssMI	GATC	2 cut(s)	217, 304
BssSI	CACGAG	1 cut(s)	403
Bst2BI	CACGAG	1 cut(s)	403
Bst4CI	ACNGT	2 cut(s)	85, 349
BstC8I	GCNNGC	2 cut(s)	254, 263
BstF5I	GGATG	1 cut(s)	365
BstKTI	GATC	2 cut(s)	220, 307
BstMBI	GATC	2 cut(s)	217, 304
BstMWI	GCNNNNNNNGC	4 cut(s)	258, 262, 327, 399
BstNSI	RCATGY	1 cut(s)	317
BstSCI	CCNGG	2 cut(s)	46, 47
BstSLI	GKGCMC	1 cut(s)	323
BsuRI	GGCC	1 cut(s)	41
BtrI	CACGTC	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	365
BtsIMutI	CAGTG	2 cut(s)	135, 299
Cac8I	GCNNGC	2 cut(s)	254, 263
Cfr9I	CCCGGG	1 cut(s)	47
CviAII	CATG	5 cut(s)	28, 192, 275, 308, 314
CviJI	RGCY	4 cut(s)	41, 173, 190, 213
CviKI_1	RGCY	4 cut(s)	41, 173, 190, 213
DpnI	GATC	2 cut(s)	219, 306
DpnII	GATC	2 cut(s)	217, 304
DraI	TTTAAA	1 cut(s)	300
DraIII	CACNNNGTG	1 cut(s)	142
EaeI	YGGCCR	1 cut(s)	39
Eco57I	CTGAAG	1 cut(s)	126
Eco88I	CYCGRG	2 cut(s)	47, 376
FaeI	CATG	5 cut(s)	31, 195, 278, 311, 317
FaiI	YATR	9 cut(s)	29, 73, 75, 125, 193, 228, 276, 309, 315
FalI	AAGNNNNNCTT	2 cut(s)	141, 173
FatI	CATG	5 cut(s)	27, 191, 274, 307, 313
FbaI	TGATCA	2 cut(s)	217, 304
FokI	GGATG	1 cut(s)	352
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	1 cut(s)	48
Hin1II	CATG	5 cut(s)	31, 195, 278, 311, 317
HinfI	GANTC	2 cut(s)	8, 31
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	1 cut(s)	371
Hpy166II	GTNNAC	1 cut(s)	362
Hpy188I	TCNGA	2 cut(s)	106, 182
Hpy188III	TCNNGA	1 cut(s)	405
Hpy8I	GTNNAC	1 cut(s)	362
HpyAV	CCTTC	1 cut(s)	233
HpyCH4III	ACNGT	2 cut(s)	85, 349
HpyCH4IV	ACGT	2 cut(s)	78, 222
HpyCH4V	TGCA	4 cut(s)	265, 278, 313, 330
HpyF10VI	GCNNNNNNNGC	4 cut(s)	258, 262, 327, 399
HpySE526I	ACGT	2 cut(s)	78, 222
Hsp92II	CATG	5 cut(s)	31, 195, 278, 311, 317
Ksp22I	TGATCA	2 cut(s)	217, 304
Kzo9I	GATC	2 cut(s)	217, 304
LpnPI	CCDG	4 cut(s)	61, 271, 305, 370
MaeII	ACGT	2 cut(s)	78, 222
MaeIII	GTNAC	2 cut(s)	64, 79
MalI	GATC	2 cut(s)	219, 306
MboI	GATC	2 cut(s)	217, 304
MboII	GAAGA	1 cut(s)	248
MhlI	GDGCHC	1 cut(s)	323
MlsI	TGGCCA	1 cut(s)	41
MluCI	AATT	1 cut(s)	331
MluNI	TGGCCA	1 cut(s)	41
MlyI	GAGTC	1 cut(s)	17
MmeI	TCCRAC	2 cut(s)	46, 133
MnlI	CCTC	2 cut(s)	335, 385
Mox20I	TGGCCA	1 cut(s)	41
MroXI	GAANNNNTTC	1 cut(s)	111
MscI	TGGCCA	1 cut(s)	41
MseI	TTAA	1 cut(s)	299
MslI	CAYNNNNRTG	2 cut(s)	225, 312
Msp20I	TGGCCA	1 cut(s)	41
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	2 cut(s)	48, 49
MwoI	GCNNNNNNNGC	4 cut(s)	258, 262, 327, 399
NciI	CCSGG	2 cut(s)	48, 49
NdeII	GATC	2 cut(s)	217, 304
NlaIII	CATG	5 cut(s)	31, 195, 278, 311, 317
NmuCI	GTSAC	2 cut(s)	64, 79
NspI	RCATGY	1 cut(s)	317
PdmI	GAANNNNTTC	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	31
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
RseI	CAYNNNNRTG	2 cut(s)	225, 312
SaqAI	TTAA	1 cut(s)	299
Sau3AI	GATC	2 cut(s)	217, 304
SchI	GAGTC	1 cut(s)	17
ScrFI	CCNGG	2 cut(s)	48, 49
SduI	GDGCHC	1 cut(s)	323
SetI	ASST	4 cut(s)	81, 175, 225, 270
SmaI	CCCGGG	1 cut(s)	49
SmiMI	CAYNNNNRTG	2 cut(s)	225, 312
Sse9I	AATT	1 cut(s)	331
SsiI	CCGC	1 cut(s)	341
StyD4I	CCNGG	2 cut(s)	46, 47
TaaI	ACNGT	2 cut(s)	85, 349
TaiI	ACGT	2 cut(s)	81, 225
TasI	AATT	1 cut(s)	331
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	299
Tru9I	TTAA	1 cut(s)	299
TscAI	CASTG	2 cut(s)	135, 299
TseFI	GTSAC	2 cut(s)	64, 79
Tsp45I	GTSAC	2 cut(s)	64, 79
TspDTI	ATGAA	1 cut(s)	263
TspMI	CCCGGG	1 cut(s)	47
TspRI	CASTG	2 cut(s)	135, 299
XceI	RCATGY	1 cut(s)	317
XmaI	CCCGGG	1 cut(s)	47
XmnI	GAANNNNTTC	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.