Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004852

Physical Location & Seq

Genomic Coordinates Reverse (-)

4119649 .. 4121144

Gene Structure 1496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g04731.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCCATCTAAAGCTGTCGAGTTCAACAACTTGGCTAATGGTAGTGACCTGCAGTCTCTGCTACAAATGGAGACCAACTCTGGCAGTATTAAAGTCTTTGAGGAGAGGCTTCGATCATGGAGAGGCGGTTCTATTGCCATTCCAGCTTTCGCGTTACAGTGGAACCCAATTGGTACATACATCAAAGGAAGCAATGCTCTGCTCAAATATGTGTTCTTCAGGCCAACTCATCCCTTTCGTCTTCTGTTTGACCCACGCAGTGCCAACATGATCCACATCCTAATACAGCGCTTTGACCGATCCGCAACCCGTCTCTCCATCCATTCCCCAATCAAACTTGTTGGAAAACCCAACTTCGTGAGCGAAAGGCGCTTCATGGTCCCTATCTCAGATGCCATAACAAAAAGGGATGTGTGTTCCGAGATCATTGCCGATTATGTTTACACTCTCGGCTTCCCAGATTATGTATGCGGGCAAGTTATTCGACAGATATATCAAGTTATGTATGACGTTATTGAAGTCGGTGATGACTACGGGTTGCCTATCACTGATAATAACGGAAGTCGCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000350 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000956 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006403 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008298 GO:0008380 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0046700 GO:0048519 GO:0050789 GO:0051179 GO:0051641 GO:0060255 GO:0065003 GO:0065007 GO:0070727 GO:0071020 GO:0071021 GO:0071025 GO:0071027 GO:0071028 GO:0071030 GO:0071033 GO:0071048 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901361 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP4 Prp18

Protein Analysis

191

Amino Acids

21.57

Weight (kDa)

8.79

Isoelectric Point (pI)

47.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004852)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45020 FvH4_3g45040 FvH4_3g45051 FvH4_3g45051 FvH4_4g04731 FvH4_4g08081 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850
rosa_chinensis	RchiOBHm_Chr1g0327511 RchiOBHm_Chr2g0145621 RchiOBHm_Chr5g0082901
rosa_laevigata	RLG00000025408
rosa_multiflora	Rmu_sc0004031.1_g000014 Rmu_sc0007172.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001500 Rroxscaffold_2G00154430 Rroxscaffold_6G00424730
rosa_rugosa	Rorug05G0480700 Rorug05G0480800 Rorug05G0480900 Rorug05G0481200 Rorug05G0481300 Rorug05G0481400 Rorug05G0481500
rosa_samantha	Rh5BG558000 Rh5DG566600
rosa_wichuraiana	Rw5G049760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	57
AccII	CGCG	1 cut(s)	152
AciI	CCGC	3 cut(s)	126, 303, 471
AclWI	GGATC	2 cut(s)	265, 294
AcuI	CTGAAG	1 cut(s)	202
AdeI	CACNNNGTG	1 cut(s)	260
AfaI	GTAC	1 cut(s)	175
AfeI	AGCGCT	1 cut(s)	290
AgsI	TTSAA	2 cut(s)	25, 518
AhdI	GACNNNNNGTC	1 cut(s)	52
AloI	GAACNNNNNNTCC	2 cut(s)	112, 144
AluBI	AGCT	2 cut(s)	14, 146
AluI	AGCT	2 cut(s)	14, 146
Alw26I	GTCTC	3 cut(s)	60, 65, 317
AlwI	GGATC	2 cut(s)	265, 294
AlwNI	CAGNNNCTG	1 cut(s)	58
Aor51HI	AGCGCT	1 cut(s)	290
AoxI	GGCC	1 cut(s)	221
AspLEI	GCGC	2 cut(s)	291, 372
AspS9I	GGNCC	1 cut(s)	379
AsuHPI	GGTGA	1 cut(s)	536
AvaII	GGWCC	1 cut(s)	379
BbsI	GAAGAC	1 cut(s)	233
BccI	CCATC	2 cut(s)	13, 326
BcgI	CGANNNNNNTGC	4 cut(s)	410, 444, 464, 498
BcoDI	GTCTC	3 cut(s)	60, 65, 317
BfmI	CTRYAG	1 cut(s)	50
BfoI	RGCGCY	2 cut(s)	292, 373
BfuAI	ACCTGC	1 cut(s)	57
Bme18I	GGWCC	1 cut(s)	379
BmeRI	GACNNNNNGTC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	379
BmiI	GGNNCC	2 cut(s)	164, 381
BmsI	GCATC	1 cut(s)	382
BpiI	GAAGAC	1 cut(s)	233
BplI	GAGNNNNNCTC	2 cut(s)	62, 94
BsaBI	GATNNNNATC	1 cut(s)	275
BsaI	GGTCTC	1 cut(s)	65
BsaXI	ACNNNNNCTCC	2 cut(s)	112, 142
Bse3DI	GCAATG	2 cut(s)	199, 426
Bse8I	GATNNNNATC	1 cut(s)	275
BseGI	GGATG	4 cut(s)	229, 276, 318, 415
BseJI	GATNNNNATC	1 cut(s)	275
BseMI	GCAATG	2 cut(s)	199, 426
BseMII	CTCAG	1 cut(s)	402
BseRI	GAGGAG	1 cut(s)	116
Bsh1236I	CGCG	1 cut(s)	152
BshFI	GGCC	1 cut(s)	223
BslFI	GGGAC	1 cut(s)	365
BsmAI	GTCTC	3 cut(s)	60, 65, 317
BsmBI	CGTCTC	1 cut(s)	317
BsmFI	GGGAC	1 cut(s)	365
BsnI	GGCC	1 cut(s)	223
Bso31I	GGTCTC	1 cut(s)	65
Bsp143I	GATC	4 cut(s)	113, 270, 299, 423
BspACI	CCGC	3 cut(s)	126, 303, 471
BspANI	GGCC	1 cut(s)	223
BspCNI	CTCAG	1 cut(s)	401
BspFNI	CGCG	1 cut(s)	152
BspLI	GGNNCC	2 cut(s)	164, 381
BspMAI	CTGCAG	1 cut(s)	54
BspMI	ACCTGC	1 cut(s)	57
BspPI	GGATC	2 cut(s)	265, 294
BspTNI	GGTCTC	1 cut(s)	65
BsrDI	GCAATG	2 cut(s)	199, 426
BssMI	GATC	4 cut(s)	113, 270, 299, 423
Bst4CI	ACNGT	1 cut(s)	159
BstAPI	GCANNNNNTGC	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	473
BstDEI	CTNAG	1 cut(s)	388
BstF5I	GGATG	4 cut(s)	229, 276, 318, 415
BstFNI	CGCG	1 cut(s)	152
BstH2I	RGCGCY	2 cut(s)	292, 373
BstHHI	GCGC	2 cut(s)	291, 372
BstKTI	GATC	4 cut(s)	116, 273, 302, 426
BstMAI	GTCTC	3 cut(s)	60, 65, 317
BstMBI	GATC	4 cut(s)	113, 270, 299, 423
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 143, 369
BstSFI	CTRYAG	1 cut(s)	50
BstUI	CGCG	1 cut(s)	152
BstV2I	GAAGAC	1 cut(s)	233
BsuRI	GGCC	1 cut(s)	223
BtsCI	GGATG	4 cut(s)	229, 276, 318, 415
BtsI	GCAGTG	1 cut(s)	265
BtsIMutI	CAGTG	3 cut(s)	164, 265, 546
BveI	ACCTGC	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	473
CaiI	CAGNNNCTG	1 cut(s)	58
CfoI	GCGC	2 cut(s)	291, 372
Cfr13I	GGNCC	1 cut(s)	379
Csp6I	GTAC	1 cut(s)	174
CviAII	CATG	3 cut(s)	117, 268, 376
CviJI	RGCY	6 cut(s)	14, 35, 109, 146, 223, 453
CviKI_1	RGCY	6 cut(s)	14, 35, 109, 146, 223, 453
CviQI	GTAC	1 cut(s)	174
DdeI	CTNAG	1 cut(s)	388
DpnI	GATC	4 cut(s)	115, 272, 301, 425
DpnII	GATC	4 cut(s)	113, 270, 299, 423
DraIII	CACNNNGTG	1 cut(s)	260
DriI	GACNNNNNGTC	1 cut(s)	52
Eam1105I	GACNNNNNGTC	1 cut(s)	52
Eco31I	GGTCTC	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	379
Eco47III	AGCGCT	1 cut(s)	290
Eco57I	CTGAAG	1 cut(s)	202
Esp3I	CGTCTC	1 cut(s)	317
FaeI	CATG	3 cut(s)	120, 271, 379
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	3 cut(s)	116, 267, 375
FauI	CCCGC	1 cut(s)	464
FokI	GGATG	4 cut(s)	216, 263, 305, 422
GlaI	GCGC	2 cut(s)	290, 371
HaeII	RGCGCY	2 cut(s)	292, 373
HaeIII	GGCC	1 cut(s)	223
HhaI	GCGC	2 cut(s)	291, 372
Hin1II	CATG	3 cut(s)	120, 271, 379
Hin6I	GCGC	2 cut(s)	289, 370
HinP1I	GCGC	2 cut(s)	289, 370
HphI	GGTGA	1 cut(s)	536
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188I	TCNGA	2 cut(s)	391, 421
Hpy188III	TCNNGA	1 cut(s)	358
Hpy8I	GTNNAC	1 cut(s)	442
HpyCH4III	ACNGT	1 cut(s)	159
HpyCH4IV	ACGT	1 cut(s)	510
HpyCH4V	TGCA	1 cut(s)	52
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 143, 369
HpyF3I	CTNAG	1 cut(s)	388
HpySE526I	ACGT	1 cut(s)	510
Hsp92II	CATG	3 cut(s)	120, 271, 379
HspAI	GCGC	2 cut(s)	289, 370
Kzo9I	GATC	4 cut(s)	113, 270, 299, 423
LpnPI	CCDG	5 cut(s)	62, 66, 156, 205, 471
LweI	GCATC	1 cut(s)	382
MaeII	ACGT	1 cut(s)	510
MaeIII	GTNAC	2 cut(s)	44, 153
MalI	GATC	4 cut(s)	115, 272, 301, 425
MboI	GATC	4 cut(s)	113, 270, 299, 423
MboII	GAAGA	2 cut(s)	208, 233
MfeI	CAATTG	1 cut(s)	168
MluCI	AATT	1 cut(s)	168
MmeI	TCCRAC	1 cut(s)	322
MnlI	CCTC	3 cut(s)	94, 99, 116
MseI	TTAA	2 cut(s)	90, 571
MunI	CAATTG	1 cut(s)	168
MvnI	CGCG	1 cut(s)	152
MwoI	GCNNNNNNNGC	3 cut(s)	58, 143, 369
NdeII	GATC	4 cut(s)	113, 270, 299, 423
NlaIII	CATG	3 cut(s)	120, 271, 379
NlaIV	GGNNCC	2 cut(s)	164, 381
NmeAIII	GCCGAG	1 cut(s)	429
NmuCI	GTSAC	1 cut(s)	44
PspN4I	GGNNCC	2 cut(s)	164, 381
PspPI	GGNCC	1 cut(s)	379
PstI	CTGCAG	1 cut(s)	54
PstNI	CAGNNNCTG	1 cut(s)	58
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
SaqAI	TTAA	2 cut(s)	90, 571
Sau3AI	GATC	4 cut(s)	113, 270, 299, 423
Sau96I	GGNCC	1 cut(s)	379
SetI	ASST	4 cut(s)	16, 51, 148, 513
SfaNI	GCATC	1 cut(s)	382
SfcI	CTRYAG	1 cut(s)	50
SinI	GGWCC	1 cut(s)	379
Sse9I	AATT	1 cut(s)	168
SsiI	CCGC	3 cut(s)	126, 303, 471
TaaI	ACNGT	1 cut(s)	159
TaiI	ACGT	1 cut(s)	513
TaqI	TCGA	3 cut(s)	18, 112, 484
TaqII	GACCGA	1 cut(s)	312
TasI	AATT	1 cut(s)	168
Tru1I	TTAA	2 cut(s)	90, 571
Tru9I	TTAA	2 cut(s)	90, 571
TscAI	CASTG	3 cut(s)	164, 265, 553
TseFI	GTSAC	1 cut(s)	44
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	1 cut(s)	364
TspGWI	ACGGA	1 cut(s)	573
TspRI	CASTG	3 cut(s)	164, 265, 553
VpaK11BI	GGWCC	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.