Rh5DG566600

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0004852
Physical Location & Seq
Reverse (-)
87401668 .. 87403658
1991 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG566600.1

Sequence Viewer

Length: 843 bp
ATGTCCAGTAGCACCCACCAGAGGCAGAGGCAGAGGCGATTCTGTTACTTTTATATCACCGCGTCACAGTGCGAGCCAATTGACCAACCTTACTTGGGCAATGCTCTGATCAAAAATCTATTCTTCAAGCTAACTCGTCCCTTTCGTCCTTGGATTGACCCACGCGGTGCCAACATGATTCCCATCCATATAATGCTCTTCAACCAACCCGGAACCCGTCTCTCCATTTATTCTCCAATCGTGTATGGTGAACCAAAACTCGTGACTGAAAGACGGTTTATGCTCCCTCTCTCAGATGTCATAACTGAAATTGGTGTGTATAAGGACATCATTGAGGGGTATCTTTCCACCATGGGAGTCCGACGAAATATGCACCCAAATGCTATTGGAAAAATACATGACGTGATTCAAGTGGCCAACCCCGGGTTTCCTATTGATGTGACAATATATGACGTGACTGTTGATGTATTGGGCAAGTCTGAAGTTGTTCCGCCGACTATATCAGTGTTTCACATTGTGGAACAAGTTGGACTTGATAGTTTGGAAGCTACTATCAGACAGAAGCCATGTGCTATTTGTCGTGAGAGCCTTGATCACGTTTATGACGCAGAAGAAGGGATTATTCGCTTGCCCTGCTTGCACCTTTTTCATGCAGATTGCCTTATCCAGTGTTTGAATGATCATGTGCATGTGTGCCCCCTCTGCAATTACCCACTGCCTACTGTGGAACTTGGTGAACCATCCAAACCCTCGGGGCAACTGGATTGGCGTGTGTTGCTCGTGATGTCGGCATGTGGTATAATAACTGTTAAGCTTCTTTGCAGACTATTAAAGCGACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

280

Amino Acids

31.77

Weight (kDa)

7.57

Isoelectric Point (pI)

46.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 190 - 236 2.5e-06 Ring finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 167
AccII CGCG 2 cut(s) 62, 165
AciI CCGC 3 cut(s) 60, 165, 491
AcoI YGGCCR 1 cut(s) 414
AcuI CTGAAG 1 cut(s) 501
AdeI CACNNNGTG 2 cut(s) 167, 517
AfiI CCNNNNNNNGG 3 cut(s) 21, 95, 423
AgsI TTSAA 4 cut(s) 127, 202, 410, 676
AjiI CACGTC 2 cut(s) 403, 454
AluBI AGCT 3 cut(s) 130, 548, 814
AluI AGCT 3 cut(s) 130, 548, 814
Alw26I GTCTC 1 cut(s) 224
Ama87I CYCGRG 2 cut(s) 422, 751
AoxI GGCC 1 cut(s) 414
Asp700I GAANNNNTTC 1 cut(s) 486
AsuC2I CCSGG 3 cut(s) 210, 423, 424
AsuHPI GGTGA 3 cut(s) 49, 260, 746
AvaI CYCGRG 2 cut(s) 422, 751
BaeGI GKGCMC 1 cut(s) 698
BalI TGGCCA 1 cut(s) 416
BanI GGYRCC 1 cut(s) 167
BauI CACGAG 2 cut(s) 260, 779
BccI CCATC 2 cut(s) 191, 748
BclI TGATCA 3 cut(s) 108, 592, 679
BcnI CCSGG 3 cut(s) 210, 423, 424
BcoDI GTCTC 1 cut(s) 224
Bme1390I CCNGG 3 cut(s) 210, 423, 424
BmeT110I CYCGRG 2 cut(s) 422, 751
BmgBI CACGTC 2 cut(s) 403, 454
BmiI GGNNCC 2 cut(s) 169, 214
BmrFI CCNGG 3 cut(s) 210, 423, 424
BpuMI CCSGG 3 cut(s) 210, 423, 424
BsaBI GATNNNNATC 1 cut(s) 182
BsaJI CCNNGG 5 cut(s) 149, 351, 421, 422, 750
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 95, 423
Bse1I ACTGG 3 cut(s) 6, 667, 765
Bse3DI GCAATG 1 cut(s) 106
Bse8I GATNNNNATC 1 cut(s) 182
BseDI CCNNGG 5 cut(s) 149, 351, 421, 422, 750
BseGI GGATG 2 cut(s) 183, 740
BseJI GATNNNNATC 1 cut(s) 182
BseLI CCNNNNNNNGG 3 cut(s) 21, 95, 423
BseMI GCAATG 1 cut(s) 106
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 3 cut(s) 6, 667, 765
BseSI GKGCMC 1 cut(s) 698
Bsh1236I CGCG 2 cut(s) 62, 165
BshFI GGCC 1 cut(s) 416
BshNI GGYRCC 1 cut(s) 167
BsiHKCI CYCGRG 2 cut(s) 422, 751
BsiSI CCGG 2 cut(s) 210, 423
BslFI GGGAC 1 cut(s) 123
BslI CCNNNNNNNGG 3 cut(s) 21, 95, 423
BsmAI GTCTC 1 cut(s) 224
BsmBI CGTCTC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 123
BsnI GGCC 1 cut(s) 416
BsoBI CYCGRG 2 cut(s) 422, 751
Bsp1286I GDGCHC 1 cut(s) 698
Bsp143I GATC 3 cut(s) 108, 592, 679
Bsp19I CCATGG 1 cut(s) 351
BspACI CCGC 3 cut(s) 60, 165, 491
BspANI GGCC 1 cut(s) 416
BspCNI CTCAG 1 cut(s) 305
BspFNI CGCG 2 cut(s) 62, 165
BspLI GGNNCC 2 cut(s) 169, 214
BspQI GCTCTTC 1 cut(s) 203
BspT107I GGYRCC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 106
BsrI ACTGG 3 cut(s) 6, 667, 765
BssECI CCNNGG 5 cut(s) 149, 351, 421, 422, 750
BssMI GATC 3 cut(s) 108, 592, 679
BssSI CACGAG 2 cut(s) 260, 779
BssT1I CCWWGG 2 cut(s) 149, 351
Bst2BI CACGAG 2 cut(s) 260, 779
Bst4CI ACNGT 5 cut(s) 69, 276, 460, 724, 808
Bst6I CTCTTC 1 cut(s) 203
BstC8I GCNNGC 3 cut(s) 74, 629, 638
BstDEI CTNAG 1 cut(s) 292
BstDSI CCRYGG 1 cut(s) 351
BstF5I GGATG 2 cut(s) 183, 740
BstFNI CGCG 2 cut(s) 62, 165
BstKTI GATC 3 cut(s) 111, 595, 682
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 3 cut(s) 108, 592, 679
BstMWI GCNNNNNNNGC 4 cut(s) 633, 637, 702, 775
BstNSI RCATGY 2 cut(s) 692, 795
BstSCI CCNGG 3 cut(s) 208, 421, 422
BstSLI GKGCMC 1 cut(s) 698
BstUI CGCG 2 cut(s) 62, 165
BsuRI GGCC 1 cut(s) 416
BtgI CCRYGG 1 cut(s) 351
BtrI CACGTC 2 cut(s) 403, 454
BtsCI GGATG 2 cut(s) 183, 740
BtsI GCAGTG 1 cut(s) 713
BtsIMutI CAGTG 4 cut(s) 74, 510, 674, 713
Cac8I GCNNGC 3 cut(s) 74, 629, 638
Cfr9I CCCGGG 1 cut(s) 422
CseI GACGC 2 cut(s) 51, 614
CviAII CATG 8 cut(s) 175, 352, 398, 567, 650, 683, 689, 792
CviJI RGCY 7 cut(s) 76, 130, 416, 548, 565, 588, 814
CviKI_1 RGCY 7 cut(s) 76, 130, 416, 548, 565, 588, 814
DdeI CTNAG 1 cut(s) 292
DpnI GATC 3 cut(s) 110, 594, 681
DpnII GATC 3 cut(s) 108, 592, 679
DraIII CACNNNGTG 2 cut(s) 167, 517
EaeI YGGCCR 1 cut(s) 414
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
EciI GGCGGA 1 cut(s) 480
Eco130I CCWWGG 2 cut(s) 149, 351
Eco57I CTGAAG 1 cut(s) 501
Eco88I CYCGRG 2 cut(s) 422, 751
EcoT14I CCWWGG 2 cut(s) 149, 351
ErhI CCWWGG 2 cut(s) 149, 351
Esp3I CGTCTC 1 cut(s) 224
FaeI CATG 8 cut(s) 178, 355, 401, 570, 653, 686, 692, 795
FalI AAGNNNNNCTT 2 cut(s) 516, 548
FaqI GGGAC 1 cut(s) 123
FatI CATG 8 cut(s) 174, 351, 397, 566, 649, 682, 688, 791
FbaI TGATCA 3 cut(s) 108, 592, 679
FokI GGATG 2 cut(s) 170, 727
HaeIII GGCC 1 cut(s) 416
HapII CCGG 2 cut(s) 210, 423
HgaI GACGC 2 cut(s) 51, 614
Hin1II CATG 8 cut(s) 178, 355, 401, 570, 653, 686, 692, 795
HindIII AAGCTT 1 cut(s) 812
HinfI GANTC 4 cut(s) 39, 178, 357, 406
HpaII CCGG 2 cut(s) 210, 423
HphI GGTGA 3 cut(s) 49, 260, 746
Hpy166II GTNNAC 2 cut(s) 251, 737
Hpy188I TCNGA 5 cut(s) 108, 295, 362, 481, 557
Hpy188III TCNNGA 3 cut(s) 262, 581, 781
Hpy8I GTNNAC 2 cut(s) 251, 737
Hpy99I CGWCG 1 cut(s) 366
HpyAV CCTTC 1 cut(s) 608
HpyCH4III ACNGT 5 cut(s) 69, 276, 460, 724, 808
HpyCH4IV ACGT 3 cut(s) 402, 453, 597
HpyCH4V TGCA 6 cut(s) 373, 640, 653, 688, 705, 822
HpyF10VI GCNNNNNNNGC 4 cut(s) 633, 637, 702, 775
HpyF3I CTNAG 1 cut(s) 292
HpySE526I ACGT 3 cut(s) 402, 453, 597
Hsp92II CATG 8 cut(s) 178, 355, 401, 570, 653, 686, 692, 795
Ksp22I TGATCA 3 cut(s) 108, 592, 679
Kzo9I GATC 3 cut(s) 108, 592, 679
LguI GCTCTTC 1 cut(s) 203
LmnI GCTCC 1 cut(s) 288
LpnPI CCDG 7 cut(s) 19, 32, 223, 436, 646, 680, 746
MaeII ACGT 3 cut(s) 402, 453, 597
MaeIII GTNAC 5 cut(s) 44, 63, 262, 439, 454
MalI GATC 3 cut(s) 110, 594, 681
MboI GATC 3 cut(s) 108, 592, 679
MboII GAAGA 3 cut(s) 115, 190, 623
MfeI CAATTG 1 cut(s) 78
MhlI GDGCHC 1 cut(s) 698
MlsI TGGCCA 1 cut(s) 416
MluCI AATT 3 cut(s) 78, 309, 706
MluNI TGGCCA 1 cut(s) 416
MlyI GAGTC 1 cut(s) 366
MmeI TCCRAC 2 cut(s) 385, 508
MnlI CCTC 7 cut(s) 15, 21, 27, 297, 328, 710, 760
Mox20I TGGCCA 1 cut(s) 416
MroXI GAANNNNTTC 1 cut(s) 486
MscI TGGCCA 1 cut(s) 416
MseI TTAA 2 cut(s) 810, 830
MslI CAYNNNNRTG 3 cut(s) 378, 600, 687
Msp20I TGGCCA 1 cut(s) 416
MspI CCGG 2 cut(s) 210, 423
MspR9I CCNGG 3 cut(s) 210, 423, 424
MunI CAATTG 1 cut(s) 78
MvnI CGCG 2 cut(s) 62, 165
MwoI GCNNNNNNNGC 4 cut(s) 633, 637, 702, 775
NciI CCSGG 3 cut(s) 210, 423, 424
NcoI CCATGG 1 cut(s) 351
NdeII GATC 3 cut(s) 108, 592, 679
NlaIII CATG 8 cut(s) 178, 355, 401, 570, 653, 686, 692, 795
NlaIV GGNNCC 2 cut(s) 169, 214
NmuCI GTSAC 4 cut(s) 63, 262, 439, 454
NspI RCATGY 2 cut(s) 692, 795
PciSI GCTCTTC 1 cut(s) 203
PcsI WCGNNNNNNNCGW 1 cut(s) 142
PdmI GAANNNNTTC 1 cut(s) 486
PfeI GAWTC 3 cut(s) 39, 178, 406
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
PspN4I GGNNCC 2 cut(s) 169, 214
RseI CAYNNNNRTG 3 cut(s) 378, 600, 687
SapI GCTCTTC 1 cut(s) 203
SaqAI TTAA 2 cut(s) 810, 830
Sau3AI GATC 3 cut(s) 108, 592, 679
SchI GAGTC 1 cut(s) 366
ScrFI CCNGG 3 cut(s) 210, 423, 424
SduI GDGCHC 1 cut(s) 698
SetI ASST 8 cut(s) 91, 132, 405, 456, 550, 600, 645, 816
SmaI CCCGGG 1 cut(s) 424
SmiMI CAYNNNNRTG 3 cut(s) 378, 600, 687
Sse9I AATT 3 cut(s) 78, 309, 706
SsiI CCGC 3 cut(s) 60, 165, 491
StyD4I CCNGG 3 cut(s) 208, 421, 422
StyI CCWWGG 2 cut(s) 149, 351
TaaI ACNGT 5 cut(s) 69, 276, 460, 724, 808
TaiI ACGT 3 cut(s) 405, 456, 600
TasI AATT 3 cut(s) 78, 309, 706
TfiI GAWTC 3 cut(s) 39, 178, 406
Tru1I TTAA 2 cut(s) 810, 830
Tru9I TTAA 2 cut(s) 810, 830
TscAI CASTG 4 cut(s) 74, 510, 674, 720
TseFI GTSAC 4 cut(s) 63, 262, 439, 454
Tsp45I GTSAC 4 cut(s) 63, 262, 439, 454
TspDTI ATGAA 1 cut(s) 638
TspMI CCCGGG 1 cut(s) 422
TspRI CASTG 4 cut(s) 74, 510, 674, 720
XceI RCATGY 2 cut(s) 692, 795
XmaI CCCGGG 1 cut(s) 422
XmnI GAANNNNTTC 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.