Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004852

Physical Location & Seq

Genomic Coordinates Reverse (-)

88714096 .. 88714550

Gene Structure 455 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35707

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTGGGAGTCCCACAAGTTCCAACACGTGATTCAAGTGGCCAACCCCGGGTTTCCTATTGATGTGACAATATATGACGTGACTGTTGATGTATTGGGCAAGTCTGAAGTTGTTCCACCGACTATATCAGTGTTTCACATTGTGGAACAAGTTGGACTTGATAGTTTGGAAGCTACTATCAGACAGAAGCCATGTGCTATCTGTTGTGAGAGCCTTGATCACGTTTATGACGCAGAAGAAGGGATTATTCGCTTGCCCTGCTTGCACCTTTTTCATGCAGATTGCCTTATCCAGTGTTTAAATGATCATGTGCATGTGTGCCCCCTCTGCAATTACCCACTGCCTACTGTGGAACTTGGTGAACCATCCAAACCCTCGGGCAACTGGATTGGCGTGTGTTGCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

135

Amino Acids

14.95

Weight (kDa)

4.87

Isoelectric Point (pI)

35.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	65 - 111	3.4e-06	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004852)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45020 FvH4_3g45040 FvH4_3g45051 FvH4_3g45051 FvH4_4g04731 FvH4_4g08081 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850
rosa_chinensis	RchiOBHm_Chr1g0327511 RchiOBHm_Chr2g0145621 RchiOBHm_Chr5g0082901
rosa_laevigata	RLG00000025408
rosa_multiflora	Rmu_sc0004031.1_g000014 Rmu_sc0007172.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001500 Rroxscaffold_2G00154430 Rroxscaffold_6G00424730
rosa_rugosa	Rorug05G0480700 Rorug05G0480800 Rorug05G0480900 Rorug05G0481200 Rorug05G0481300 Rorug05G0481400 Rorug05G0481500
rosa_samantha	Rh5BG558000 Rh5DG566600
rosa_wichuraiana	Rw5G049760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	39
AcuI	CTGAAG	1 cut(s)	126
AcvI	CACGTG	1 cut(s)	28
AdeI	CACNNNGTG	1 cut(s)	142
AfiI	CCNNNNNNNGG	1 cut(s)	48
AflIII	ACRYGT	1 cut(s)	25
AgsI	TTSAA	1 cut(s)	35
AjiI	CACGTC	1 cut(s)	79
AjuI	GAANNNNNNNTTGG	2 cut(s)	15, 47
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
Ama87I	CYCGRG	2 cut(s)	47, 376
AoxI	GGCC	1 cut(s)	39
Asp700I	GAANNNNTTC	1 cut(s)	111
AsuC2I	CCSGG	2 cut(s)	48, 49
AsuHPI	GGTGA	1 cut(s)	371
AvaI	CYCGRG	2 cut(s)	47, 376
BaeGI	GKGCMC	1 cut(s)	323
BalI	TGGCCA	1 cut(s)	41
BauI	CACGAG	1 cut(s)	403
BbrPI	CACGTG	1 cut(s)	28
BccI	CCATC	1 cut(s)	373
BclI	TGATCA	2 cut(s)	217, 304
BcnI	CCSGG	2 cut(s)	48, 49
Bme1390I	CCNGG	2 cut(s)	48, 49
BmeT110I	CYCGRG	2 cut(s)	47, 376
BmgBI	CACGTC	1 cut(s)	79
BmrFI	CCNGG	2 cut(s)	48, 49
BpuMI	CCSGG	2 cut(s)	48, 49
BsaAI	YACGTR	1 cut(s)	28
BsaJI	CCNNGG	3 cut(s)	46, 47, 375
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
Bse1I	ACTGG	2 cut(s)	292, 389
BseDI	CCNNGG	3 cut(s)	46, 47, 375
BseGI	GGATG	1 cut(s)	365
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseNI	ACTGG	2 cut(s)	292, 389
BseSI	GKGCMC	1 cut(s)	323
BshFI	GGCC	1 cut(s)	41
BsiHKCI	CYCGRG	2 cut(s)	47, 376
BsiSI	CCGG	1 cut(s)	48
BslI	CCNNNNNNNGG	1 cut(s)	48
BsnI	GGCC	1 cut(s)	41
BsoBI	CYCGRG	2 cut(s)	47, 376
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp143I	GATC	2 cut(s)	217, 304
BspANI	GGCC	1 cut(s)	41
BsrI	ACTGG	2 cut(s)	292, 389
BssECI	CCNNGG	3 cut(s)	46, 47, 375
BssMI	GATC	2 cut(s)	217, 304
BssSI	CACGAG	1 cut(s)	403
Bst2BI	CACGAG	1 cut(s)	403
Bst4CI	ACNGT	2 cut(s)	85, 349
BstBAI	YACGTR	1 cut(s)	28
BstC8I	GCNNGC	2 cut(s)	254, 263
BstF5I	GGATG	1 cut(s)	365
BstKTI	GATC	2 cut(s)	220, 307
BstMBI	GATC	2 cut(s)	217, 304
BstMWI	GCNNNNNNNGC	4 cut(s)	258, 262, 327, 399
BstNSI	RCATGY	1 cut(s)	317
BstSCI	CCNGG	2 cut(s)	46, 47
BstSLI	GKGCMC	1 cut(s)	323
BsuRI	GGCC	1 cut(s)	41
BtrI	CACGTC	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	365
BtsI	GCAGTG	1 cut(s)	338
BtsIMutI	CAGTG	3 cut(s)	135, 299, 338
Cac8I	GCNNGC	2 cut(s)	254, 263
Cfr9I	CCCGGG	1 cut(s)	47
CseI	GACGC	1 cut(s)	239
CviAII	CATG	4 cut(s)	192, 275, 308, 314
CviJI	RGCY	4 cut(s)	41, 173, 190, 213
CviKI_1	RGCY	4 cut(s)	41, 173, 190, 213
DpnI	GATC	2 cut(s)	219, 306
DpnII	GATC	2 cut(s)	217, 304
DraI	TTTAAA	1 cut(s)	300
DraIII	CACNNNGTG	1 cut(s)	142
EaeI	YGGCCR	1 cut(s)	39
Eco57I	CTGAAG	1 cut(s)	126
Eco72I	CACGTG	1 cut(s)	28
Eco88I	CYCGRG	2 cut(s)	47, 376
FaeI	CATG	4 cut(s)	195, 278, 311, 317
FaiI	YATR	8 cut(s)	73, 75, 125, 193, 228, 276, 309, 315
FalI	AAGNNNNNCTT	2 cut(s)	141, 173
FatI	CATG	4 cut(s)	191, 274, 307, 313
FbaI	TGATCA	2 cut(s)	217, 304
FokI	GGATG	1 cut(s)	352
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	1 cut(s)	48
HgaI	GACGC	1 cut(s)	239
Hin1II	CATG	4 cut(s)	195, 278, 311, 317
HinfI	GANTC	2 cut(s)	8, 31
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	1 cut(s)	371
Hpy166II	GTNNAC	1 cut(s)	362
Hpy188I	TCNGA	2 cut(s)	106, 182
Hpy188III	TCNNGA	1 cut(s)	405
Hpy8I	GTNNAC	1 cut(s)	362
HpyAV	CCTTC	1 cut(s)	233
HpyCH4III	ACNGT	2 cut(s)	85, 349
HpyCH4IV	ACGT	3 cut(s)	27, 78, 222
HpyCH4V	TGCA	4 cut(s)	265, 278, 313, 330
HpyF10VI	GCNNNNNNNGC	4 cut(s)	258, 262, 327, 399
HpySE526I	ACGT	3 cut(s)	27, 78, 222
Hsp92II	CATG	4 cut(s)	195, 278, 311, 317
Ksp22I	TGATCA	2 cut(s)	217, 304
Kzo9I	GATC	2 cut(s)	217, 304
LpnPI	CCDG	4 cut(s)	61, 271, 305, 370
MaeII	ACGT	3 cut(s)	27, 78, 222
MaeIII	GTNAC	2 cut(s)	64, 79
MalI	GATC	2 cut(s)	219, 306
MboI	GATC	2 cut(s)	217, 304
MboII	GAAGA	1 cut(s)	248
MhlI	GDGCHC	1 cut(s)	323
MlsI	TGGCCA	1 cut(s)	41
MluCI	AATT	1 cut(s)	331
MluNI	TGGCCA	1 cut(s)	41
MlyI	GAGTC	1 cut(s)	17
MmeI	TCCRAC	2 cut(s)	46, 133
MnlI	CCTC	2 cut(s)	335, 385
Mox20I	TGGCCA	1 cut(s)	41
MroXI	GAANNNNTTC	1 cut(s)	111
MscI	TGGCCA	1 cut(s)	41
MseI	TTAA	1 cut(s)	299
MslI	CAYNNNNRTG	2 cut(s)	225, 312
Msp20I	TGGCCA	1 cut(s)	41
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	2 cut(s)	48, 49
MwoI	GCNNNNNNNGC	4 cut(s)	258, 262, 327, 399
NciI	CCSGG	2 cut(s)	48, 49
NdeII	GATC	2 cut(s)	217, 304
NlaIII	CATG	4 cut(s)	195, 278, 311, 317
NmuCI	GTSAC	2 cut(s)	64, 79
NspI	RCATGY	1 cut(s)	317
PdmI	GAANNNNTTC	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	31
PleI	GAGTC	1 cut(s)	16
PmaCI	CACGTG	1 cut(s)	28
PmlI	CACGTG	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	16
Ppu21I	YACGTR	1 cut(s)	28
PspCI	CACGTG	1 cut(s)	28
RseI	CAYNNNNRTG	2 cut(s)	225, 312
SaqAI	TTAA	1 cut(s)	299
Sau3AI	GATC	2 cut(s)	217, 304
SchI	GAGTC	1 cut(s)	17
ScrFI	CCNGG	2 cut(s)	48, 49
SduI	GDGCHC	1 cut(s)	323
SetI	ASST	5 cut(s)	30, 81, 175, 225, 270
SmaI	CCCGGG	1 cut(s)	49
SmiMI	CAYNNNNRTG	2 cut(s)	225, 312
Sse9I	AATT	1 cut(s)	331
StyD4I	CCNGG	2 cut(s)	46, 47
TaaI	ACNGT	2 cut(s)	85, 349
TaiI	ACGT	3 cut(s)	30, 81, 225
TasI	AATT	1 cut(s)	331
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	299
Tru9I	TTAA	1 cut(s)	299
TscAI	CASTG	3 cut(s)	135, 299, 345
TseFI	GTSAC	2 cut(s)	64, 79
Tsp45I	GTSAC	2 cut(s)	64, 79
TspDTI	ATGAA	1 cut(s)	263
TspMI	CCCGGG	1 cut(s)	47
TspRI	CASTG	3 cut(s)	135, 299, 345
XceI	RCATGY	1 cut(s)	317
XmaI	CCCGGG	1 cut(s)	47
XmnI	GAANNNNTTC	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.