Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004852

Physical Location & Seq

Genomic Coordinates Forward (+)

66229182 .. 66232579

Gene Structure 3398 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0481400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGATGGATGTTGTTGACTTCCAACGCGGGAGAGAGTTACTGTTCGATCATCATCATTTTCTCAACGAGCAGGAAACTCCGTCGTCGGAGATGAAGTTTTCCGGTGGCTCCGATTACAAGCACGGGTGGGGTTTTCCTGAAGGTGAGGGGAAAGGGTTTGTTGGGTCGAGGACTACTGAAGCTGAGCTTGTTTCGTCGTCCGAGTCGACTGTAGAAGACGACGATTACATTGCTGAGTTGACTCGCCAGATGACTCACTACATGCTTCAAGACGACGACAAACACGCTCTGAAAACCAGTACTACTAGCTCCGAGAAAAACGAAGTGTCGTGGGGTTGTGTCGGTTGGCCAAGTGACTCTACGATGATGTGGTCGCCGTTGGGATCGAGCAGTGGAAGCCCAGAAGGTCCATCTCAGGAGCCGTCGCCGCCGGTGACCCCAGGCAAATACCAAGCTTCGGAACATAAAAGTCCGTCGTACGCCGCCGTTTTGTGCAAGTTGGACAAGTTAGATATGAACAAACAGGGAAGCCCAAGTGGAAGTATCCCAGTAGCTGAAGCTGAAAATCCAAAGCAATGTGTAGCTTTTGATCAAAGCCAAGACTCTAAGATTAATTTTACGCAAAAGCAAGGGCAAAGCTCAAAGAAGCAAGGCTCAATAGATAATGGTAGACAACCGAAGAATATTGCTCATCAAAAATTTAAGTCCTACGACCAAAACCAGAAGAAAGGAGGGTCTTCTGCTGATGGCGGATTAAGGCATCCTCCACCTATTGCCAATTTGCACTCAAACCCGTGGCTGAACAACCAGCAAGGCCCCTCAAATATGAGGGCAGTTTTCCTTGGCGGATCGGGTTCCGGTTCCAGAGTTGGGACGCCGTCTTGTGGGACTGGTGTCTTCTTGCCCTGTGTTATTGGTAACACATCCCAATCACCCAAGAATAAAAGAGGATGTGCCCCTGTTCTTATACCCGCAAAGGTAGTACAAGCCCTGAAGGTTCACTTTGACCGAGTCGGTGACCAACCTCGACCAAACCCTACTTCTTTTCCCATATTAAACGATTCCTCAAAGGCTGGAAGGAGGACAAGCACGTCTGCAAATAGAAAGCGCCACTCGAGAGGTGCGGCAACGCCGGACATGAACAATAATGAGATGGGTCTACCTCAAGAATGGACTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

393

Amino Acids

42.68

Weight (kDa)

7.67

Isoelectric Point (pI)

55.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004852)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45020 FvH4_3g45040 FvH4_3g45051 FvH4_3g45051 FvH4_4g04731 FvH4_4g08081 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850
rosa_chinensis	RchiOBHm_Chr1g0327511 RchiOBHm_Chr2g0145621 RchiOBHm_Chr5g0082901
rosa_laevigata	RLG00000025408
rosa_multiflora	Rmu_sc0004031.1_g000014 Rmu_sc0007172.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001500 Rroxscaffold_2G00154430 Rroxscaffold_6G00424730
rosa_rugosa	Rorug05G0480700 Rorug05G0480800 Rorug05G0480900 Rorug05G0481200 Rorug05G0481300 Rorug05G0481400 Rorug05G0481500
rosa_samantha	Rh5BG558000 Rh5DG566600
rosa_wichuraiana	Rw5G049760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1090
AccI	GTMKAC	3 cut(s)	206, 670, 1159
AccII	CGCG	1 cut(s)	27
AciI	CCGC	7 cut(s)	27, 428, 483, 750, 846, 972, 1124
AclWI	GGATC	2 cut(s)	391, 856
AcoI	YGGCCR	1 cut(s)	347
AcsI	RAATTY	1 cut(s)	698
AcuI	CTGAAG	4 cut(s)	159, 198, 576, 1013
AcyI	GRCGYC	1 cut(s)	875
AfaI	GTAC	3 cut(s)	301, 479, 984
AfiI	CCNNNNNNNGG	3 cut(s)	457, 870, 884
AgsI	TTSAA	1 cut(s)	269
AjiI	CACGTC	1 cut(s)	1092
AjnI	CCWGG	1 cut(s)	439
AjuI	GAANNNNNNNTTGG	2 cut(s)	1024, 1056
AluBI	AGCT	8 cut(s)	182, 187, 309, 455, 554, 560, 584, 639
AluI	AGCT	8 cut(s)	182, 187, 309, 455, 554, 560, 584, 639
AlwI	GGATC	2 cut(s)	391, 856
AlwNI	CAGNNNCTG	1 cut(s)	554
Ama87I	CYCGRG	1 cut(s)	1114
AoxI	GGCC	2 cut(s)	347, 814
ApoI	RAATTY	1 cut(s)	698
AseI	ATTAAT	1 cut(s)	612
AspLEI	GCGC	1 cut(s)	1110
AspS9I	GGNCC	2 cut(s)	407, 815
AsuHPI	GGTGA	4 cut(s)	155, 445, 924, 1028
AvaI	CYCGRG	1 cut(s)	1114
AvaII	GGWCC	1 cut(s)	407
BaeGI	GKGCMC	1 cut(s)	958
BalI	TGGCCA	1 cut(s)	349
BbsI	GAAGAC	3 cut(s)	222, 729, 889
BccI	CCATC	3 cut(s)	418, 740, 1147
BceAI	ACGGC	4 cut(s)	361, 406, 470, 862
BcgI	CGANNNNNNTGC	2 cut(s)	212, 246
BciT130I	CCWGG	1 cut(s)	441
BciVI	GTATCC	1 cut(s)	554
BclI	TGATCA	1 cut(s)	589
BfaI	CTAG	1 cut(s)	306
BfmI	CTRYAG	1 cut(s)	210
BfoI	RGCGCY	1 cut(s)	1111
BfuI	GTATCC	1 cut(s)	554
BisI	GCNGC	3 cut(s)	428, 483, 1125
BlpI	GCTNAGC	1 cut(s)	183
BlsI	GCNGC	3 cut(s)	429, 484, 1126
BmcAI	AGTACT	1 cut(s)	301
Bme1390I	CCNGG	1 cut(s)	441
Bme18I	GGWCC	1 cut(s)	407
BmeT110I	CYCGRG	1 cut(s)	1114
BmgBI	CACGTC	1 cut(s)	1092
BmgT120I	GGNCC	2 cut(s)	407, 815
BmiI	GGNNCC	5 cut(s)	109, 420, 817, 856, 862
BmrFI	CCNGG	1 cut(s)	441
BmrI	ACTGGG	1 cut(s)	542
BmsI	GCATC	1 cut(s)	769
BmuI	ACTGGG	1 cut(s)	542
BoxI	GACNNNNGTC	1 cut(s)	893
BpiI	GAAGAC	3 cut(s)	222, 729, 889
Bpu1102I	GCTNAGC	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	1149
BsaBI	GATNNNNATC	1 cut(s)	51
BsaHI	GRCGYC	1 cut(s)	875
BsaJI	CCNNGG	3 cut(s)	439, 794, 841
BsaWI	WCCGGW	2 cut(s)	101, 857
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	3 cut(s)	457, 870, 884
Bse118I	RCCGGY	1 cut(s)	430
Bse1I	ACTGG	3 cut(s)	297, 548, 895
Bse3DI	GCAATG	2 cut(s)	228, 581
Bse8I	GATNNNNATC	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	441
BseDI	CCNNGG	3 cut(s)	439, 794, 841
BseGI	GGATG	4 cut(s)	13, 760, 923, 956
BseJI	GATNNNNATC	1 cut(s)	51
BseLI	CCNNNNNNNGG	3 cut(s)	457, 870, 884
BseMI	GCAATG	2 cut(s)	228, 581
BseMII	CTCAG	3 cut(s)	174, 225, 428
BseNI	ACTGG	3 cut(s)	297, 548, 895
BseSI	GKGCMC	1 cut(s)	958
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	2 cut(s)	349, 816
BsiHKCI	CYCGRG	1 cut(s)	1114
BsiSI	CCGG	4 cut(s)	102, 431, 858, 1133
BsiWI	CGTACG	1 cut(s)	477
BslFI	GGGAC	2 cut(s)	886, 901
BslI	CCNNNNNNNGG	3 cut(s)	457, 870, 884
BsmFI	GGGAC	2 cut(s)	886, 901
BsnI	GGCC	2 cut(s)	349, 816
BsoBI	CYCGRG	1 cut(s)	1114
Bsp1286I	GDGCHC	1 cut(s)	958
Bsp143I	GATC	4 cut(s)	46, 383, 589, 848
Bsp1720I	GCTNAGC	1 cut(s)	183
BspACI	CCGC	7 cut(s)	27, 428, 483, 750, 846, 972, 1124
BspANI	GGCC	2 cut(s)	349, 816
BspCNI	CTCAG	3 cut(s)	175, 226, 427
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	5 cut(s)	109, 420, 817, 856, 862
BspPI	GGATC	2 cut(s)	391, 856
BsrDI	GCAATG	2 cut(s)	228, 581
BsrFI	RCCGGY	1 cut(s)	430
BsrI	ACTGG	3 cut(s)	297, 548, 895
BssAI	RCCGGY	1 cut(s)	430
BssECI	CCNNGG	3 cut(s)	439, 794, 841
BssMI	GATC	4 cut(s)	46, 383, 589, 848
BssNI	GRCGYC	1 cut(s)	875
BssT1I	CCWWGG	1 cut(s)	841
Bst2UI	CCWGG	1 cut(s)	441
Bst4CI	ACNGT	2 cut(s)	42, 211
BstACI	GRCGYC	1 cut(s)	875
BstDEI	CTNAG	4 cut(s)	183, 234, 414, 606
BstDSI	CCRYGG	1 cut(s)	794
BstEII	GGTNACC	2 cut(s)	433, 1016
BstF5I	GGATG	4 cut(s)	13, 760, 923, 956
BstFNI	CGCG	1 cut(s)	27
BstH2I	RGCGCY	1 cut(s)	1111
BstHHI	GCGC	1 cut(s)	1110
BstKTI	GATC	4 cut(s)	49, 386, 592, 851
BstMBI	GATC	4 cut(s)	46, 383, 589, 848
BstMWI	GCNNNNNNNGC	2 cut(s)	396, 427
BstNI	CCWGG	1 cut(s)	441
BstNSI	RCATGY	1 cut(s)	265
BstPAI	GACNNNNGTC	1 cut(s)	893
BstPI	GGTNACC	2 cut(s)	433, 1016
BstSCI	CCNGG	1 cut(s)	439
BstSFI	CTRYAG	1 cut(s)	210
BstSLI	GKGCMC	1 cut(s)	958
BstUI	CGCG	1 cut(s)	27
BstV2I	GAAGAC	3 cut(s)	222, 729, 889
BsuI	GTATCC	1 cut(s)	554
BsuRI	GGCC	2 cut(s)	349, 816
BtgI	CCRYGG	1 cut(s)	794
BtrI	CACGTC	1 cut(s)	1092
BtsCI	GGATG	4 cut(s)	13, 760, 923, 956
BtsI	GCAGTG	1 cut(s)	397
BtsIMutI	CAGTG	1 cut(s)	397
CaiI	CAGNNNCTG	1 cut(s)	554
CfoI	GCGC	1 cut(s)	1110
Cfr10I	RCCGGY	1 cut(s)	430
Cfr13I	GGNCC	2 cut(s)	407, 815
CseI	GACGC	1 cut(s)	883
Csp6I	GTAC	3 cut(s)	300, 478, 983
CviAII	CATG	2 cut(s)	262, 1138
CviQI	GTAC	3 cut(s)	300, 478, 983
DdeI	CTNAG	4 cut(s)	183, 234, 414, 606
DpnI	GATC	4 cut(s)	48, 385, 591, 850
DpnII	GATC	4 cut(s)	46, 383, 589, 848
DrdI	GACNNNNNNGTC	1 cut(s)	1090
DseDI	GACNNNNNNGTC	1 cut(s)	1090
EaeI	YGGCCR	1 cut(s)	347
EciI	GGCGGA	2 cut(s)	765, 861
Eco130I	CCWWGG	1 cut(s)	841
Eco47I	GGWCC	1 cut(s)	407
Eco57I	CTGAAG	4 cut(s)	159, 198, 576, 1013
Eco88I	CYCGRG	1 cut(s)	1114
Eco91I	GGTNACC	2 cut(s)	433, 1016
EcoO109I	RGGNCCY	1 cut(s)	815
EcoO65I	GGTNACC	2 cut(s)	433, 1016
EcoRII	CCWGG	1 cut(s)	439
EcoT14I	CCWWGG	1 cut(s)	841
ErhI	CCWWGG	1 cut(s)	841
FaeI	CATG	2 cut(s)	265, 1141
FaiI	YATR	7 cut(s)	263, 465, 515, 827, 968, 1052, 1139
FalI	AAGNNNNNCTT	4 cut(s)	171, 203, 986, 1018
FaqI	GGGAC	2 cut(s)	886, 901
FatI	CATG	2 cut(s)	261, 1137
FauI	CCCGC	2 cut(s)	20, 979
FbaI	TGATCA	1 cut(s)	589
FblI	GTMKAC	3 cut(s)	206, 670, 1159
Fnu4HI	GCNGC	3 cut(s)	428, 483, 1125
FokI	GGATG	4 cut(s)	20, 747, 910, 963
Fsp4HI	GCNGC	3 cut(s)	428, 483, 1125
FspBI	CTAG	1 cut(s)	306
GlaI	GCGC	1 cut(s)	1109
GluI	GCNGC	3 cut(s)	428, 483, 1125
HaeII	RGCGCY	1 cut(s)	1111
HaeIII	GGCC	2 cut(s)	349, 816
HapII	CCGG	4 cut(s)	102, 431, 858, 1133
HgaI	GACGC	1 cut(s)	883
HhaI	GCGC	1 cut(s)	1110
Hin1I	GRCGYC	1 cut(s)	875
Hin1II	CATG	2 cut(s)	265, 1141
Hin6I	GCGC	1 cut(s)	1108
HinP1I	GCGC	1 cut(s)	1108
HincII	GTYRAC	3 cut(s)	16, 207, 240
HindII	GTYRAC	3 cut(s)	16, 207, 240
HindIII	AAGCTT	1 cut(s)	453
HinfI	GANTC	7 cut(s)	203, 241, 253, 356, 602, 1011, 1061
HpaII	CCGG	4 cut(s)	102, 431, 858, 1133
HphI	GGTGA	4 cut(s)	155, 445, 924, 1028
Hpy166II	GTNNAC	6 cut(s)	16, 207, 240, 671, 1000, 1160
Hpy188I	TCNGA	6 cut(s)	88, 112, 202, 291, 313, 460
Hpy188III	TCNNGA	6 cut(s)	137, 269, 416, 864, 1116, 1166
Hpy8I	GTNNAC	6 cut(s)	16, 207, 240, 671, 1000, 1160
Hpy99I	CGWCG	7 cut(s)	85, 88, 199, 224, 278, 427, 478
HpyAV	CCTTC	4 cut(s)	134, 398, 988, 1071
HpyCH4III	ACNGT	2 cut(s)	42, 211
HpyCH4IV	ACGT	1 cut(s)	1091
HpyCH4V	TGCA	3 cut(s)	495, 784, 1097
HpyF10VI	GCNNNNNNNGC	2 cut(s)	396, 427
HpyF3I	CTNAG	4 cut(s)	183, 234, 414, 606
HpySE526I	ACGT	1 cut(s)	1091
Hsp92I	GRCGYC	1 cut(s)	875
Hsp92II	CATG	2 cut(s)	265, 1141
HspAI	GCGC	1 cut(s)	1108
Ksp22I	TGATCA	1 cut(s)	589
Kzo9I	GATC	4 cut(s)	46, 383, 589, 848
LmnI	GCTCC	3 cut(s)	113, 314, 418
LweI	GCATC	1 cut(s)	769
MaeI	CTAG	1 cut(s)	306
MaeII	ACGT	1 cut(s)	1091
MaeIII	GTNAC	5 cut(s)	36, 353, 433, 917, 1016
MalI	GATC	4 cut(s)	48, 385, 591, 850
MboI	GATC	4 cut(s)	46, 383, 589, 848
MboII	GAAGA	5 cut(s)	227, 691, 729, 736, 889
MhlI	GDGCHC	1 cut(s)	958
MlsI	TGGCCA	1 cut(s)	349
MluCI	AATT	3 cut(s)	613, 698, 778
MluNI	TGGCCA	1 cut(s)	349
MlyI	GAGTC	6 cut(s)	212, 235, 247, 350, 596, 1020
MmeI	TCCRAC	3 cut(s)	46, 66, 480
Mox20I	TGGCCA	1 cut(s)	349
MscI	TGGCCA	1 cut(s)	349
MseI	TTAA	4 cut(s)	612, 702, 755, 1055
Msp20I	TGGCCA	1 cut(s)	349
MspI	CCGG	4 cut(s)	102, 431, 858, 1133
MspR9I	CCNGG	1 cut(s)	441
MvaI	CCWGG	1 cut(s)	441
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	396, 427
NdeII	GATC	4 cut(s)	46, 383, 589, 848
NlaIII	CATG	2 cut(s)	265, 1141
NlaIV	GGNNCC	5 cut(s)	109, 420, 817, 856, 862
NmuCI	GTSAC	3 cut(s)	353, 433, 1016
NspI	RCATGY	1 cut(s)	265
PaeR7I	CTCGAG	1 cut(s)	1114
PcsI	WCGNNNNNNNCGW	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	1061
Pfl23II	CGTACG	1 cut(s)	477
PflFI	GACNNNGTC	2 cut(s)	877, 1010
PkrI	GCNGC	3 cut(s)	429, 484, 1126
PleI	GAGTC	6 cut(s)	211, 235, 247, 350, 596, 1019
PpsI	GAGTC	6 cut(s)	211, 235, 247, 350, 596, 1019
PshAI	GACNNNNGTC	1 cut(s)	893
PshBI	ATTAAT	1 cut(s)	612
Psp6I	CCWGG	1 cut(s)	439
PspEI	GGTNACC	2 cut(s)	433, 1016
PspGI	CCWGG	1 cut(s)	439
PspLI	CGTACG	1 cut(s)	477
PspN4I	GGNNCC	5 cut(s)	109, 420, 817, 856, 862
PspPI	GGNCC	2 cut(s)	407, 815
PstNI	CAGNNNCTG	1 cut(s)	554
PsyI	GACNNNGTC	2 cut(s)	877, 1010
RsaI	GTAC	3 cut(s)	301, 479, 984
RsaNI	GTAC	3 cut(s)	300, 478, 983
SalI	GTCGAC	1 cut(s)	205
SaqAI	TTAA	4 cut(s)	612, 702, 755, 1055
SatI	GCNGC	3 cut(s)	428, 483, 1125
Sau3AI	GATC	4 cut(s)	46, 383, 589, 848
Sau96I	GGNCC	2 cut(s)	407, 815
ScaI	AGTACT	1 cut(s)	301
SchI	GAGTC	6 cut(s)	212, 235, 247, 350, 596, 1020
ScrFI	CCNGG	1 cut(s)	441
SduI	GDGCHC	1 cut(s)	958
SfaNI	GCATC	1 cut(s)	769
SfcI	CTRYAG	1 cut(s)	210
Sfr274I	CTCGAG	1 cut(s)	1114
SgrAI	CRCCGGYG	1 cut(s)	430
SinI	GGWCC	1 cut(s)	407
SlaI	CTCGAG	1 cut(s)	1114
SmlI	CTYRAG	2 cut(s)	1114, 1164
SmoI	CTYRAG	2 cut(s)	1114, 1164
Sse9I	AATT	3 cut(s)	613, 698, 778
SsiI	CCGC	7 cut(s)	27, 428, 483, 750, 846, 972, 1124
SspI	AATATT	1 cut(s)	685
SspMI	CTAG	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	439
StyI	CCWWGG	1 cut(s)	841
TaaI	ACNGT	2 cut(s)	42, 211
TaiI	ACGT	1 cut(s)	1094
TaqI	TCGA	6 cut(s)	45, 167, 206, 386, 1027, 1115
TaqII	GACCGA	1 cut(s)	1023
TasI	AATT	3 cut(s)	613, 698, 778
TatI	WGTACW	2 cut(s)	299, 982
TauI	GCSGC	3 cut(s)	430, 485, 1127
TfiI	GAWTC	1 cut(s)	1061
Tru1I	TTAA	4 cut(s)	612, 702, 755, 1055
Tru9I	TTAA	4 cut(s)	612, 702, 755, 1055
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	3 cut(s)	353, 433, 1016
Tsp45I	GTSAC	3 cut(s)	353, 433, 1016
TspDTI	ATGAA	3 cut(s)	107, 530, 1154
TspGWI	ACGGA	2 cut(s)	69, 462
TspRI	CASTG	1 cut(s)	397
Tth111I	GACNNNGTC	2 cut(s)	877, 1010
VpaK11BI	GGWCC	1 cut(s)	407
VspI	ATTAAT	1 cut(s)	612
XapI	RAATTY	1 cut(s)	698
XceI	RCATGY	1 cut(s)	265
XhoI	CTCGAG	1 cut(s)	1114
XmiI	GTMKAC	3 cut(s)	206, 670, 1159
XspI	CTAG	1 cut(s)	306
ZrmI	AGTACT	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.