Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004852

Physical Location & Seq

Genomic Coordinates Forward (+)

1830195 .. 1840577

Gene Structure 10383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00001500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGTCGTCCAGTAGCACCCACCAGAGGCAGAGGCGATTCTGTTACTTTTATATCACCGCGTCACAGTGCGAGCCAATTGACCAACCTTACTTGGGCAATGCTCTGATCAAAAATCTATTCTTCAAGCTAACTCGTCCCTTTCGTCCTTGGATTGACCCACGCGGTGCCAACATGATTCCCATCCATATAATGCTCTTCAACCAACCCGGAACCCGTCTCTCCATTTATTCTCCAATCGCGTTTGGTGAACCAAAACTCGTGACTGAAAGACGGTTTATGCTCCCTCTCACAGATGTCATAACTGAAATTGGTGTGTATAAGGACATCATTGAGGGGTATCTTTCCACCATGGGAGTCCGACGAAATATACACCCAGATGCTATTGGAAAAATACATGACGTGATTCAAGTGGCCAACCCCGGGTTTCCTATTGATGTGACAATATATGACGTGACTGTTGATGTATTGGGCAAGTCTGAAGTTGTTCCGCCGACTATATCAGTGTTTCACATTGTGGAACAAGTTGGACTTGATAGTTTGGAAGCTACTATCAGACAGAAGCCATGTGCTATTTGTCGTGAGAGCCTTGATCACGTTTATGACGCAGAAGAAATGATTATTCGCTTGCCCTGCTTCCACCTCTTTCATGCAGATTGCCTTATCCAGTGTTTAAATGATCATGTGCATGTGTGCCCCCCCTCTGCAATTACCCACTGCCTACTGTGGAACTTGGTGAACCATCCAAACCCTCGGGGCAACTGGATTGGCTCTATTCCAAAATACAATCAAACTTATACAAATTGTAATTGCTCAATCCGTTTGGTAATTCCAATGAAATATGACCAGGGAAATAGAGAGATTTTGGTGGAGCGAGGCTCGCTTAAATACCCCGATCTCAATTACTTTCCTAGACATCATACTTCATTGGGTACGCCACATGAGAAAGAGTCAATACAATTGTCATTTATTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

324

Amino Acids

37.08

Weight (kDa)

6.72

Isoelectric Point (pI)

38.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004852)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45020 FvH4_3g45040 FvH4_3g45051 FvH4_3g45051 FvH4_4g04731 FvH4_4g08081 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850
rosa_chinensis	RchiOBHm_Chr1g0327511 RchiOBHm_Chr2g0145621 RchiOBHm_Chr5g0082901
rosa_laevigata	RLG00000025408
rosa_multiflora	Rmu_sc0004031.1_g000014 Rmu_sc0007172.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001500 Rroxscaffold_2G00154430 Rroxscaffold_6G00424730
rosa_rugosa	Rorug05G0480700 Rorug05G0480800 Rorug05G0480900 Rorug05G0481200 Rorug05G0481300 Rorug05G0481400 Rorug05G0481500
rosa_samantha	Rh5BG558000 Rh5DG566600
rosa_wichuraiana	Rw5G049760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	164
AccII	CGCG	3 cut(s)	59, 162, 239
AciI	CCGC	3 cut(s)	57, 162, 488
AcoI	YGGCCR	1 cut(s)	411
AcuI	CTGAAG	1 cut(s)	498
AdeI	CACNNNGTG	2 cut(s)	164, 514
AfaI	GTAC	1 cut(s)	931
AfiI	CCNNNNNNNGG	3 cut(s)	24, 92, 420
AgsI	TTSAA	3 cut(s)	124, 199, 407
AjiI	CACGTC	2 cut(s)	400, 451
AjnI	CCWGG	1 cut(s)	843
AluBI	AGCT	2 cut(s)	127, 545
AluI	AGCT	2 cut(s)	127, 545
Alw26I	GTCTC	1 cut(s)	221
Ama87I	CYCGRG	2 cut(s)	419, 750
AoxI	GGCC	1 cut(s)	411
Asp700I	GAANNNNTTC	1 cut(s)	483
AsuC2I	CCSGG	3 cut(s)	207, 420, 421
AsuHPI	GGTGA	3 cut(s)	46, 257, 745
AvaI	CYCGRG	2 cut(s)	419, 750
BaeGI	GKGCMC	1 cut(s)	695
BalI	TGGCCA	1 cut(s)	413
BanI	GGYRCC	1 cut(s)	164
BauI	CACGAG	1 cut(s)	257
BccI	CCATC	2 cut(s)	188, 747
BciT130I	CCWGG	1 cut(s)	845
BclI	TGATCA	3 cut(s)	105, 589, 676
BcnI	CCSGG	3 cut(s)	207, 420, 421
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	1 cut(s)	909
Bme1390I	CCNGG	4 cut(s)	207, 420, 421, 845
BmeT110I	CYCGRG	2 cut(s)	419, 750
BmgBI	CACGTC	2 cut(s)	400, 451
BmiI	GGNNCC	2 cut(s)	166, 211
BmrFI	CCNGG	4 cut(s)	207, 420, 421, 845
BmsI	GCATC	1 cut(s)	367
BplI	GAGNNNNNCTC	2 cut(s)	860, 892
BpuMI	CCSGG	3 cut(s)	207, 420, 421
BsaBI	GATNNNNATC	1 cut(s)	179
BsaJI	CCNNGG	6 cut(s)	146, 348, 418, 419, 749, 844
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 92, 420
Bse1I	ACTGG	3 cut(s)	9, 664, 764
Bse3DI	GCAATG	1 cut(s)	103
Bse8I	GATNNNNATC	1 cut(s)	179
BseBI	CCWGG	1 cut(s)	845
BseDI	CCNNGG	6 cut(s)	146, 348, 418, 419, 749, 844
BseGI	GGATG	2 cut(s)	180, 739
BseJI	GATNNNNATC	1 cut(s)	179
BseLI	CCNNNNNNNGG	3 cut(s)	24, 92, 420
BseMI	GCAATG	1 cut(s)	103
BseNI	ACTGG	3 cut(s)	9, 664, 764
BseSI	GKGCMC	1 cut(s)	695
Bsh1236I	CGCG	3 cut(s)	59, 162, 239
BshFI	GGCC	1 cut(s)	413
BshNI	GGYRCC	1 cut(s)	164
BsiHKCI	CYCGRG	2 cut(s)	419, 750
BsiSI	CCGG	2 cut(s)	207, 420
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	3 cut(s)	24, 92, 420
BsmAI	GTCTC	1 cut(s)	221
BsmBI	CGTCTC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	120
BsnI	GGCC	1 cut(s)	413
BsoBI	CYCGRG	2 cut(s)	419, 750
Bsp1286I	GDGCHC	1 cut(s)	695
Bsp143I	GATC	4 cut(s)	105, 589, 676, 892
Bsp19I	CCATGG	1 cut(s)	348
BspACI	CCGC	3 cut(s)	57, 162, 488
BspANI	GGCC	1 cut(s)	413
BspFNI	CGCG	3 cut(s)	59, 162, 239
BspLI	GGNNCC	2 cut(s)	166, 211
BspQI	GCTCTTC	1 cut(s)	200
BspT107I	GGYRCC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	103
BsrI	ACTGG	3 cut(s)	9, 664, 764
BssECI	CCNNGG	6 cut(s)	146, 348, 418, 419, 749, 844
BssMI	GATC	4 cut(s)	105, 589, 676, 892
BssSI	CACGAG	1 cut(s)	257
BssT1I	CCWWGG	2 cut(s)	146, 348
Bst2BI	CACGAG	1 cut(s)	257
Bst2UI	CCWGG	1 cut(s)	845
Bst4CI	ACNGT	4 cut(s)	66, 273, 457, 723
Bst6I	CTCTTC	1 cut(s)	200
BstC8I	GCNNGC	3 cut(s)	71, 626, 878
BstDSI	CCRYGG	1 cut(s)	348
BstF5I	GGATG	2 cut(s)	180, 739
BstFNI	CGCG	3 cut(s)	59, 162, 239
BstKTI	GATC	4 cut(s)	108, 592, 679, 895
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	4 cut(s)	105, 589, 676, 892
BstMWI	GCNNNNNNNGC	2 cut(s)	630, 877
BstNI	CCWGG	1 cut(s)	845
BstNSI	RCATGY	1 cut(s)	689
BstSCI	CCNGG	4 cut(s)	205, 418, 419, 843
BstSLI	GKGCMC	1 cut(s)	695
BstUI	CGCG	3 cut(s)	59, 162, 239
BsuRI	GGCC	1 cut(s)	413
BtgI	CCRYGG	1 cut(s)	348
BtrI	CACGTC	2 cut(s)	400, 451
BtsCI	GGATG	2 cut(s)	180, 739
BtsI	GCAGTG	1 cut(s)	712
BtsIMutI	CAGTG	4 cut(s)	71, 507, 671, 712
Cac8I	GCNNGC	3 cut(s)	71, 626, 878
Cfr9I	CCCGGG	1 cut(s)	419
CseI	GACGC	2 cut(s)	48, 611
Csp6I	GTAC	1 cut(s)	930
CviAII	CATG	8 cut(s)	172, 349, 395, 564, 647, 680, 686, 938
CviJI	RGCY	8 cut(s)	73, 127, 413, 545, 562, 585, 768, 876
CviKI_1	RGCY	8 cut(s)	73, 127, 413, 545, 562, 585, 768, 876
CviQI	GTAC	1 cut(s)	930
DpnI	GATC	4 cut(s)	107, 591, 678, 894
DpnII	GATC	4 cut(s)	105, 589, 676, 892
DraI	TTTAAA	1 cut(s)	672
DraIII	CACNNNGTG	2 cut(s)	164, 514
EaeI	YGGCCR	1 cut(s)	411
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
EciI	GGCGGA	1 cut(s)	477
Eco130I	CCWWGG	2 cut(s)	146, 348
Eco57I	CTGAAG	1 cut(s)	498
Eco88I	CYCGRG	2 cut(s)	419, 750
EcoRII	CCWGG	1 cut(s)	843
EcoT14I	CCWWGG	2 cut(s)	146, 348
ErhI	CCWWGG	2 cut(s)	146, 348
Esp3I	CGTCTC	1 cut(s)	221
FaeI	CATG	8 cut(s)	175, 352, 398, 567, 650, 683, 689, 941
FalI	AAGNNNNNCTT	2 cut(s)	513, 545
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	8 cut(s)	171, 348, 394, 563, 646, 679, 685, 937
FbaI	TGATCA	3 cut(s)	105, 589, 676
FokI	GGATG	2 cut(s)	167, 726
FspBI	CTAG	1 cut(s)	909
HaeIII	GGCC	1 cut(s)	413
HapII	CCGG	2 cut(s)	207, 420
HgaI	GACGC	2 cut(s)	48, 611
Hin1II	CATG	8 cut(s)	175, 352, 398, 567, 650, 683, 689, 941
HinfI	GANTC	5 cut(s)	36, 175, 354, 403, 947
HpaII	CCGG	2 cut(s)	207, 420
HphI	GGTGA	3 cut(s)	46, 257, 745
Hpy166II	GTNNAC	2 cut(s)	248, 736
Hpy188I	TCNGA	4 cut(s)	105, 359, 478, 554
Hpy188III	TCNNGA	2 cut(s)	259, 578
Hpy8I	GTNNAC	2 cut(s)	248, 736
Hpy99I	CGWCG	1 cut(s)	363
HpyCH4III	ACNGT	4 cut(s)	66, 273, 457, 723
HpyCH4IV	ACGT	3 cut(s)	399, 450, 594
HpyCH4V	TGCA	3 cut(s)	650, 685, 704
HpyF10VI	GCNNNNNNNGC	2 cut(s)	630, 877
HpySE526I	ACGT	3 cut(s)	399, 450, 594
Hsp92II	CATG	8 cut(s)	175, 352, 398, 567, 650, 683, 689, 941
Ksp22I	TGATCA	3 cut(s)	105, 589, 676
Kzo9I	GATC	4 cut(s)	105, 589, 676, 892
LguI	GCTCTTC	1 cut(s)	200
LmnI	GCTCC	2 cut(s)	285, 868
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	1 cut(s)	909
MaeII	ACGT	3 cut(s)	399, 450, 594
MaeIII	GTNAC	5 cut(s)	41, 60, 259, 436, 451
MalI	GATC	4 cut(s)	107, 591, 678, 894
MboI	GATC	4 cut(s)	105, 589, 676, 892
MboII	GAAGA	3 cut(s)	112, 187, 620
MfeI	CAATTG	2 cut(s)	75, 956
MhlI	GDGCHC	1 cut(s)	695
MlsI	TGGCCA	1 cut(s)	413
MluCI	AATT	8 cut(s)	75, 306, 705, 799, 805, 825, 898, 956
MluNI	TGGCCA	1 cut(s)	413
MlyI	GAGTC	2 cut(s)	363, 956
MmeI	TCCRAC	2 cut(s)	382, 505
MnlI	CCTC	8 cut(s)	18, 24, 294, 325, 650, 709, 759, 866
Mox20I	TGGCCA	1 cut(s)	413
MroXI	GAANNNNTTC	1 cut(s)	483
MscI	TGGCCA	1 cut(s)	413
MseI	TTAA	2 cut(s)	671, 882
MslI	CAYNNNNRTG	3 cut(s)	375, 597, 684
Msp20I	TGGCCA	1 cut(s)	413
MspI	CCGG	2 cut(s)	207, 420
MspR9I	CCNGG	4 cut(s)	207, 420, 421, 845
MunI	CAATTG	2 cut(s)	75, 956
MvaI	CCWGG	1 cut(s)	845
MvnI	CGCG	3 cut(s)	59, 162, 239
MwoI	GCNNNNNNNGC	2 cut(s)	630, 877
NciI	CCSGG	3 cut(s)	207, 420, 421
NcoI	CCATGG	1 cut(s)	348
NdeII	GATC	4 cut(s)	105, 589, 676, 892
NlaIII	CATG	8 cut(s)	175, 352, 398, 567, 650, 683, 689, 941
NlaIV	GGNNCC	2 cut(s)	166, 211
NmuCI	GTSAC	4 cut(s)	60, 259, 436, 451
NspI	RCATGY	1 cut(s)	689
PciSI	GCTCTTC	1 cut(s)	200
PcsI	WCGNNNNNNNCGW	1 cut(s)	139
PdmI	GAANNNNTTC	1 cut(s)	483
PfeI	GAWTC	3 cut(s)	36, 175, 403
PleI	GAGTC	2 cut(s)	362, 955
PpsI	GAGTC	2 cut(s)	362, 955
Psp6I	CCWGG	1 cut(s)	843
PspGI	CCWGG	1 cut(s)	843
PspN4I	GGNNCC	2 cut(s)	166, 211
RsaI	GTAC	1 cut(s)	931
RsaNI	GTAC	1 cut(s)	930
RseI	CAYNNNNRTG	3 cut(s)	375, 597, 684
SapI	GCTCTTC	1 cut(s)	200
SaqAI	TTAA	2 cut(s)	671, 882
Sau3AI	GATC	4 cut(s)	105, 589, 676, 892
SchI	GAGTC	2 cut(s)	363, 956
ScrFI	CCNGG	4 cut(s)	207, 420, 421, 845
SduI	GDGCHC	1 cut(s)	695
SetI	ASST	7 cut(s)	88, 129, 402, 453, 547, 597, 642
SfaNI	GCATC	1 cut(s)	367
SmaI	CCCGGG	1 cut(s)	421
SmiMI	CAYNNNNRTG	3 cut(s)	375, 597, 684
Sse9I	AATT	8 cut(s)	75, 306, 705, 799, 805, 825, 898, 956
SsiI	CCGC	3 cut(s)	57, 162, 488
SspMI	CTAG	1 cut(s)	909
StyD4I	CCNGG	4 cut(s)	205, 418, 419, 843
StyI	CCWWGG	2 cut(s)	146, 348
TaaI	ACNGT	4 cut(s)	66, 273, 457, 723
TaiI	ACGT	3 cut(s)	402, 453, 597
TasI	AATT	8 cut(s)	75, 306, 705, 799, 805, 825, 898, 956
TfiI	GAWTC	3 cut(s)	36, 175, 403
Tru1I	TTAA	2 cut(s)	671, 882
Tru9I	TTAA	2 cut(s)	671, 882
TscAI	CASTG	4 cut(s)	71, 507, 671, 719
TseFI	GTSAC	4 cut(s)	60, 259, 436, 451
Tsp45I	GTSAC	4 cut(s)	60, 259, 436, 451
TspDTI	ATGAA	3 cut(s)	635, 848, 912
TspGWI	ACGGA	1 cut(s)	806
TspMI	CCCGGG	1 cut(s)	419
TspRI	CASTG	4 cut(s)	71, 507, 671, 719
XceI	RCATGY	1 cut(s)	689
XmaI	CCCGGG	1 cut(s)	419
XmnI	GAANNNNTTC	1 cut(s)	483
XspI	CTAG	1 cut(s)	909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.