Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007172.1

Orthogroup ID

OG0004852

Physical Location & Seq

Genomic Coordinates Reverse (-)

25713 .. 26120

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007172.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atgtgggagtcccacaagttccaacacgtgattcaagtggccaaccccgggtttcctattgatgtgacaatatatgacgtgactgttgatgtattgggcaagtctaaagttgttccgccgactatatcagtgtttcacattgtggaacaagttggacttgatagtttggaagctactatcagacagaagccatgtgctatttttcgtgagagccttgatcacgtttatgacgcagaagaagggattattcgcttgccctgcttgcacctttttcatgcagatttccttatccagtgtttaaatgattatgtgcatgtgtgccccctctgcaattacccactgcctactgtggaacttggtgaaccatccaaaccctcaggcaactggattggcgtgtgttgctcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

135

Amino Acids

15.11

Weight (kDa)

5.15

Isoelectric Point (pI)

31.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004852)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45020 FvH4_3g45040 FvH4_3g45051 FvH4_3g45051 FvH4_4g04731 FvH4_4g08081 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850
rosa_chinensis	RchiOBHm_Chr1g0327511 RchiOBHm_Chr2g0145621 RchiOBHm_Chr5g0082901
rosa_laevigata	RLG00000025408
rosa_multiflora	Rmu_sc0004031.1_g000014 Rmu_sc0007172.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001500 Rroxscaffold_2G00154430 Rroxscaffold_6G00424730
rosa_rugosa	Rorug05G0480700 Rorug05G0480800 Rorug05G0480900 Rorug05G0481200 Rorug05G0481300 Rorug05G0481400 Rorug05G0481500
rosa_samantha	Rh5BG558000 Rh5DG566600
rosa_wichuraiana	Rw5G049760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	116
AcoI	YGGCCR	1 cut(s)	39
AcvI	CACGTG	1 cut(s)	28
AdeI	CACNNNGTG	1 cut(s)	142
AfiI	CCNNNNNNNGG	1 cut(s)	48
AflIII	ACRYGT	1 cut(s)	25
AgsI	TTSAA	1 cut(s)	35
AjiI	CACGTC	1 cut(s)	79
AjuI	GAANNNNNNNTTGG	2 cut(s)	15, 47
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
Ama87I	CYCGRG	1 cut(s)	47
AoxI	GGCC	1 cut(s)	39
AsuC2I	CCSGG	2 cut(s)	48, 49
AsuHPI	GGTGA	1 cut(s)	371
AvaI	CYCGRG	1 cut(s)	47
AxyI	CCTNAGG	1 cut(s)	376
BaeGI	GKGCMC	1 cut(s)	323
BalI	TGGCCA	1 cut(s)	41
BauI	CACGAG	1 cut(s)	403
BbrPI	CACGTG	1 cut(s)	28
BccI	CCATC	1 cut(s)	373
BclI	TGATCA	1 cut(s)	217
BcnI	CCSGG	2 cut(s)	48, 49
Bme1390I	CCNGG	2 cut(s)	48, 49
BmeT110I	CYCGRG	1 cut(s)	47
BmgBI	CACGTC	1 cut(s)	79
BmrFI	CCNGG	2 cut(s)	48, 49
BpuMI	CCSGG	2 cut(s)	48, 49
BsaAI	YACGTR	1 cut(s)	28
BsaJI	CCNNGG	2 cut(s)	46, 47
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
Bse1I	ACTGG	2 cut(s)	292, 389
Bse21I	CCTNAGG	1 cut(s)	376
BseDI	CCNNGG	2 cut(s)	46, 47
BseGI	GGATG	1 cut(s)	365
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	2 cut(s)	292, 389
BseSI	GKGCMC	1 cut(s)	323
BshFI	GGCC	1 cut(s)	41
BsiHKCI	CYCGRG	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	48
BslI	CCNNNNNNNGG	1 cut(s)	48
BsnI	GGCC	1 cut(s)	41
BsoBI	CYCGRG	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp143I	GATC	1 cut(s)	217
BspACI	CCGC	1 cut(s)	116
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	1 cut(s)	389
BsrI	ACTGG	2 cut(s)	292, 389
BssECI	CCNNGG	2 cut(s)	46, 47
BssMI	GATC	1 cut(s)	217
BssSI	CACGAG	1 cut(s)	403
Bst2BI	CACGAG	1 cut(s)	403
Bst4CI	ACNGT	2 cut(s)	85, 349
BstBAI	YACGTR	1 cut(s)	28
BstC8I	GCNNGC	2 cut(s)	254, 263
BstDEI	CTNAG	1 cut(s)	376
BstF5I	GGATG	1 cut(s)	365
BstKTI	GATC	1 cut(s)	220
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	4 cut(s)	258, 262, 327, 399
BstNSI	RCATGY	1 cut(s)	317
BstSCI	CCNGG	2 cut(s)	46, 47
BstSLI	GKGCMC	1 cut(s)	323
Bsu36I	CCTNAGG	1 cut(s)	376
BsuRI	GGCC	1 cut(s)	41
BtrI	CACGTC	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	365
BtsI	GCAGTG	1 cut(s)	338
BtsIMutI	CAGTG	3 cut(s)	135, 299, 338
Cac8I	GCNNGC	2 cut(s)	254, 263
Cfr9I	CCCGGG	1 cut(s)	47
CseI	GACGC	1 cut(s)	239
CviAII	CATG	3 cut(s)	192, 275, 314
CviJI	RGCY	4 cut(s)	41, 173, 190, 213
CviKI_1	RGCY	4 cut(s)	41, 173, 190, 213
DdeI	CTNAG	1 cut(s)	376
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
DraI	TTTAAA	1 cut(s)	300
DraIII	CACNNNGTG	1 cut(s)	142
EaeI	YGGCCR	1 cut(s)	39
EciI	GGCGGA	1 cut(s)	105
Eco72I	CACGTG	1 cut(s)	28
Eco81I	CCTNAGG	1 cut(s)	376
Eco88I	CYCGRG	1 cut(s)	47
FaeI	CATG	3 cut(s)	195, 278, 317
FaiI	YATR	8 cut(s)	73, 75, 125, 193, 228, 276, 309, 315
FalI	AAGNNNNNCTT	2 cut(s)	141, 173
FatI	CATG	3 cut(s)	191, 274, 313
FbaI	TGATCA	1 cut(s)	217
FokI	GGATG	1 cut(s)	352
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	1 cut(s)	48
HgaI	GACGC	1 cut(s)	239
Hin1II	CATG	3 cut(s)	195, 278, 317
HinfI	GANTC	2 cut(s)	8, 31
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	1 cut(s)	371
Hpy166II	GTNNAC	1 cut(s)	362
Hpy188I	TCNGA	1 cut(s)	182
Hpy188III	TCNNGA	2 cut(s)	206, 405
Hpy8I	GTNNAC	1 cut(s)	362
HpyAV	CCTTC	1 cut(s)	233
HpyCH4III	ACNGT	2 cut(s)	85, 349
HpyCH4IV	ACGT	3 cut(s)	27, 78, 222
HpyCH4V	TGCA	4 cut(s)	265, 278, 313, 330
HpyF10VI	GCNNNNNNNGC	4 cut(s)	258, 262, 327, 399
HpyF3I	CTNAG	1 cut(s)	376
HpySE526I	ACGT	3 cut(s)	27, 78, 222
Hsp92II	CATG	3 cut(s)	195, 278, 317
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	217
LpnPI	CCDG	5 cut(s)	61, 271, 305, 363, 370
MaeII	ACGT	3 cut(s)	27, 78, 222
MaeIII	GTNAC	2 cut(s)	64, 79
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	1 cut(s)	248
MhlI	GDGCHC	1 cut(s)	323
MlsI	TGGCCA	1 cut(s)	41
MluCI	AATT	1 cut(s)	331
MluNI	TGGCCA	1 cut(s)	41
MlyI	GAGTC	1 cut(s)	17
MmeI	TCCRAC	2 cut(s)	46, 133
MnlI	CCTC	2 cut(s)	335, 385
Mox20I	TGGCCA	1 cut(s)	41
MscI	TGGCCA	1 cut(s)	41
MseI	TTAA	1 cut(s)	299
MslI	CAYNNNNRTG	1 cut(s)	225
Msp20I	TGGCCA	1 cut(s)	41
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	2 cut(s)	48, 49
MwoI	GCNNNNNNNGC	4 cut(s)	258, 262, 327, 399
NciI	CCSGG	2 cut(s)	48, 49
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	3 cut(s)	195, 278, 317
NmuCI	GTSAC	2 cut(s)	64, 79
NspI	RCATGY	1 cut(s)	317
PfeI	GAWTC	1 cut(s)	31
PleI	GAGTC	1 cut(s)	16
PmaCI	CACGTG	1 cut(s)	28
PmlI	CACGTG	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	16
Ppu21I	YACGTR	1 cut(s)	28
PspCI	CACGTG	1 cut(s)	28
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	299
Sau3AI	GATC	1 cut(s)	217
SchI	GAGTC	1 cut(s)	17
ScrFI	CCNGG	2 cut(s)	48, 49
SduI	GDGCHC	1 cut(s)	323
SetI	ASST	5 cut(s)	30, 81, 175, 225, 270
SmaI	CCCGGG	1 cut(s)	49
SmiMI	CAYNNNNRTG	1 cut(s)	225
Sse9I	AATT	1 cut(s)	331
SsiI	CCGC	1 cut(s)	116
StyD4I	CCNGG	2 cut(s)	46, 47
TaaI	ACNGT	2 cut(s)	85, 349
TaiI	ACGT	3 cut(s)	30, 81, 225
TasI	AATT	1 cut(s)	331
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	299
Tru9I	TTAA	1 cut(s)	299
TscAI	CASTG	3 cut(s)	135, 299, 345
TseFI	GTSAC	2 cut(s)	64, 79
Tsp45I	GTSAC	2 cut(s)	64, 79
TspDTI	ATGAA	1 cut(s)	263
TspMI	CCCGGG	1 cut(s)	47
TspRI	CASTG	3 cut(s)	135, 299, 345
XceI	RCATGY	1 cut(s)	317
XmaI	CCCGGG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.