Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004852

Physical Location & Seq

Genomic Coordinates Forward (+)

66241901 .. 66243098

Gene Structure 1198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0481500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGTCATAGGGAAGTCTCCAGTTATCAGCAGGAATTATCTTGATCTGTTATGGTTCCAAGATTCAGTTACAGAGAAGAAGAAGAAGATGAAGAACAGTGGAAACGGGAAGAGTCACAAAGGAAATGTGAGAGAGGATCAGGTGAAGAAGGAGAAGAAATCAGGATCGGGCATGAATGGATCGCCCAAGAAAGGTGGCCATGGCAGCAAGTTCACCTGGGCTACTCTACAGCCGACATGGGTTTTCAGAAGGAAGTCATCGACGCCTAGGATCCAAACTTTGAAGACACAGTCGAGATCCCAAGCGTATGATGATTATCATGGTATTGATCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

111

Amino Acids

12.57

Weight (kDa)

10.26

Isoelectric Point (pI)

45.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004852)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45020 FvH4_3g45040 FvH4_3g45051 FvH4_3g45051 FvH4_4g04731 FvH4_4g08081 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850
rosa_chinensis	RchiOBHm_Chr1g0327511 RchiOBHm_Chr2g0145621 RchiOBHm_Chr5g0082901
rosa_laevigata	RLG00000025408
rosa_multiflora	Rmu_sc0004031.1_g000014 Rmu_sc0007172.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001500 Rroxscaffold_2G00154430 Rroxscaffold_6G00424730
rosa_rugosa	Rorug05G0480700 Rorug05G0480800 Rorug05G0480900 Rorug05G0481200 Rorug05G0481300 Rorug05G0481400 Rorug05G0481500
rosa_samantha	Rh5BG558000 Rh5DG566600
rosa_wichuraiana	Rw5G049760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	6 cut(s)	144, 172, 187, 265, 278, 291
AcoI	YGGCCR	1 cut(s)	196
AcyI	GRCGYC	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	283
AjnI	CCWGG	1 cut(s)	215
Alw26I	GTCTC	1 cut(s)	21
AlwI	GGATC	6 cut(s)	144, 172, 187, 265, 278, 291
AoxI	GGCC	1 cut(s)	196
ApeKI	GCWGC	1 cut(s)	204
AspA2I	CCTAGG	1 cut(s)	266
AsuHPI	GGTGA	2 cut(s)	154, 205
AvrII	CCTAGG	1 cut(s)	266
BalI	TGGCCA	1 cut(s)	198
BamHI	GGATCC	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	290
BbvI	GCAGC	1 cut(s)	216
BciT130I	CCWGG	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	1 cut(s)	267
BfmI	CTRYAG	1 cut(s)	227
BisI	GCNGC	1 cut(s)	205
BlnI	CCTAGG	1 cut(s)	266
BlsI	GCNGC	1 cut(s)	206
Bme1390I	CCNGG	1 cut(s)	217
BmiI	GGNNCC	2 cut(s)	56, 272
BmrFI	CCNGG	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	290
BsaBI	GATNNNNATC	1 cut(s)	315
BsaHI	GRCGYC	1 cut(s)	263
BsaJI	CCNNGG	3 cut(s)	199, 216, 266
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	20
Bse8I	GATNNNNATC	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	217
BseDI	CCNNGG	3 cut(s)	199, 216, 266
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseNI	ACTGG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	216
BshFI	GGCC	1 cut(s)	198
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmAI	GTCTC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	198
Bsp143I	GATC	7 cut(s)	43, 136, 164, 179, 270, 296, 328
Bsp19I	CCATGG	1 cut(s)	199
BspANI	GGCC	1 cut(s)	198
BspLI	GGNNCC	2 cut(s)	56, 272
BspPI	GGATC	6 cut(s)	144, 172, 187, 265, 278, 291
BsrI	ACTGG	1 cut(s)	20
BssECI	CCNNGG	3 cut(s)	199, 216, 266
BssMI	GATC	7 cut(s)	43, 136, 164, 179, 270, 296, 328
BssNI	GRCGYC	1 cut(s)	263
BssT1I	CCWWGG	2 cut(s)	199, 266
Bst2UI	CCWGG	1 cut(s)	217
Bst4CI	ACNGT	2 cut(s)	98, 291
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	1 cut(s)	263
BstDSI	CCRYGG	1 cut(s)	199
BstKTI	GATC	7 cut(s)	46, 139, 167, 182, 273, 299, 331
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	7 cut(s)	43, 136, 164, 179, 270, 296, 328
BstMWI	GCNNNNNNNGC	1 cut(s)	204
BstNI	CCWGG	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	215
BstSFI	CTRYAG	1 cut(s)	227
BstV1I	GCAGC	1 cut(s)	216
BstV2I	GAAGAC	1 cut(s)	290
BstX2I	RGATCY	2 cut(s)	270, 296
BstYI	RGATCY	2 cut(s)	270, 296
BsuRI	GGCC	1 cut(s)	198
BtgI	CCRYGG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	103
CseI	GACGC	1 cut(s)	271
CspCI	CAANNNNNGTGG	2 cut(s)	175, 210
CviAII	CATG	4 cut(s)	172, 200, 237, 320
CviJI	RGCY	3 cut(s)	198, 221, 232
CviKI_1	RGCY	3 cut(s)	198, 221, 232
DpnI	GATC	7 cut(s)	45, 138, 166, 181, 272, 298, 330
DpnII	GATC	7 cut(s)	43, 136, 164, 179, 270, 296, 328
EaeI	YGGCCR	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco130I	CCWWGG	2 cut(s)	199, 266
EcoRII	CCWGG	1 cut(s)	215
EcoT14I	CCWWGG	2 cut(s)	199, 266
ErhI	CCWWGG	2 cut(s)	199, 266
FaeI	CATG	4 cut(s)	175, 203, 240, 323
FaiI	YATR	7 cut(s)	8, 52, 173, 201, 238, 309, 321
FatI	CATG	4 cut(s)	171, 199, 236, 319
Fnu4HI	GCNGC	1 cut(s)	205
Fsp4HI	GCNGC	1 cut(s)	205
FspBI	CTAG	1 cut(s)	267
GluI	GCNGC	1 cut(s)	205
HaeIII	GGCC	1 cut(s)	198
HgaI	GACGC	1 cut(s)	271
Hin1I	GRCGYC	1 cut(s)	263
Hin1II	CATG	4 cut(s)	175, 203, 240, 323
HinfI	GANTC	2 cut(s)	62, 112
HphI	GGTGA	2 cut(s)	154, 205
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	1 cut(s)	248
Hpy188III	TCNNGA	3 cut(s)	41, 162, 294
Hpy8I	GTNNAC	1 cut(s)	213
Hpy99I	CGWCG	1 cut(s)	265
HpyAV	CCTTC	2 cut(s)	142, 243
HpyCH4III	ACNGT	2 cut(s)	98, 291
HpyF10VI	GCNNNNNNNGC	1 cut(s)	204
Hsp92I	GRCGYC	1 cut(s)	263
Hsp92II	CATG	4 cut(s)	175, 203, 240, 323
Kzo9I	GATC	7 cut(s)	43, 136, 164, 179, 270, 296, 328
LpnPI	CCDG	6 cut(s)	16, 33, 125, 147, 202, 229
Lsp1109I	GCAGC	1 cut(s)	216
MaeI	CTAG	1 cut(s)	267
MaeIII	GTNAC	2 cut(s)	67, 113
MalI	GATC	7 cut(s)	45, 138, 166, 181, 272, 298, 330
MboI	GATC	7 cut(s)	43, 136, 164, 179, 270, 296, 328
MboII	GAAGA	9 cut(s)	88, 91, 94, 97, 103, 121, 157, 166, 295
MflI	RGATCY	2 cut(s)	270, 296
MlsI	TGGCCA	1 cut(s)	198
MluCI	AATT	1 cut(s)	34
MluNI	TGGCCA	1 cut(s)	198
MlyI	GAGTC	1 cut(s)	121
MnlI	CCTC	1 cut(s)	127
Mox20I	TGGCCA	1 cut(s)	198
MscI	TGGCCA	1 cut(s)	198
Msp20I	TGGCCA	1 cut(s)	198
MspR9I	CCNGG	1 cut(s)	217
MvaI	CCWGG	1 cut(s)	217
MwoI	GCNNNNNNNGC	1 cut(s)	204
NcoI	CCATGG	1 cut(s)	199
NdeII	GATC	7 cut(s)	43, 136, 164, 179, 270, 296, 328
NlaIII	CATG	4 cut(s)	175, 203, 240, 323
NlaIV	GGNNCC	2 cut(s)	56, 272
NmuCI	GTSAC	1 cut(s)	113
PfeI	GAWTC	1 cut(s)	62
PflFI	GACNNNGTC	1 cut(s)	289
PkrI	GCNGC	1 cut(s)	206
PleI	GAGTC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	215
PspN4I	GGNNCC	2 cut(s)	56, 272
PsuI	RGATCY	2 cut(s)	270, 296
PsyI	GACNNNGTC	1 cut(s)	289
SatI	GCNGC	1 cut(s)	205
Sau3AI	GATC	7 cut(s)	43, 136, 164, 179, 270, 296, 328
SchI	GAGTC	1 cut(s)	121
ScrFI	CCNGG	1 cut(s)	217
SetI	ASST	3 cut(s)	144, 196, 218
SfcI	CTRYAG	1 cut(s)	227
Sse9I	AATT	1 cut(s)	34
SspMI	CTAG	1 cut(s)	267
StyD4I	CCNGG	1 cut(s)	215
StyI	CCWWGG	2 cut(s)	199, 266
TaaI	ACNGT	2 cut(s)	98, 291
TaqI	TCGA	2 cut(s)	260, 293
TasI	AATT	1 cut(s)	34
TfiI	GAWTC	1 cut(s)	62
TscAI	CASTG	1 cut(s)	103
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	1 cut(s)	204
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	2 cut(s)	104, 188
TspRI	CASTG	1 cut(s)	103
Tth111I	GACNNNGTC	1 cut(s)	289
XmaJI	CCTAGG	1 cut(s)	266
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.