Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004852

Physical Location & Seq

Genomic Coordinates Reverse (-)

5644255 .. 5647393

Gene Structure 3139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g09850.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGATCCACATCCATTTACAGCGCTTTGACCGATCCGCAACCCGTCTCTCCATCCATTCCCCAATCAAACTTGTTGGAAAACCCAACTTCGTGAGCGAAAGGCGCTTCATGGTCCCTATCTCAGATGCCATAGCAAGAAGGGATGTGTATTCCGAGATCATTGCCGGTTATGTTTTCACCCTCGGCTTCCCAGATTATGTATGCGGGCAAGTTATTCGACAGATATATCAAGTTATGTATGACGTTATTGAAGTGGGTGATGACTACGGGTTGCCTATCACTGTGATAATAACAGAAGTCGCTGTTAAAGTATTGGGCAAGTCTGTGGCTCCTCCAACTAAATCAACTTATCGCCTCCTTCTTAACAGAGTGAGACCTGATAGTTTGGAATCCACCGTTACACAGGAGTCGTGTTTTGGTTGTCGTGAGAGGCTTGATCACGTTTATGATGCAGAAGAAGGGATTACACGCTTGCCTGCTTGCTTGCATGTACTTCATGTAGATTGCCTTGTTCAGCTTTTGCAGGTGAATCGTAAGCTTGTGTGTCCCATCTGTAGTCACCCACTGCCTTTTCTTGGTTACCTTCAATTCTTAGACGATGTCCGATATCAACTAGTTGTTCATACCTTGAATCCTGGATTCTTGATAAGCTACAAGTGCAGATGTTGTCAGCAGCAGTTGGAGTTGTTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

232

Amino Acids

26.41

Weight (kDa)

7.57

Isoelectric Point (pI)

44.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004852)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45020 FvH4_3g45040 FvH4_3g45051 FvH4_3g45051 FvH4_4g04731 FvH4_4g08081 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850
rosa_chinensis	RchiOBHm_Chr1g0327511 RchiOBHm_Chr2g0145621 RchiOBHm_Chr5g0082901
rosa_laevigata	RLG00000025408
rosa_multiflora	Rmu_sc0004031.1_g000014 Rmu_sc0007172.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001500 Rroxscaffold_2G00154430 Rroxscaffold_6G00424730
rosa_rugosa	Rorug05G0480700 Rorug05G0480800 Rorug05G0480900 Rorug05G0481200 Rorug05G0481300 Rorug05G0481400 Rorug05G0481500
rosa_samantha	Rh5BG558000 Rh5DG566600
rosa_wichuraiana	Rw5G049760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	514
Acc36I	ACCTGC	1 cut(s)	514
AciI	CCGC	2 cut(s)	36, 204
AclWI	GGATC	1 cut(s)	27
AfaI	GTAC	1 cut(s)	492
AfeI	AGCGCT	1 cut(s)	23
AfiI	CCNNNNNNNGG	1 cut(s)	575
AgsI	TTSAA	3 cut(s)	251, 587, 631
AhlI	ACTAGT	1 cut(s)	613
AjnI	CCWGG	1 cut(s)	634
AluBI	AGCT	3 cut(s)	517, 538, 651
AluI	AGCT	3 cut(s)	517, 538, 651
Alw26I	GTCTC	2 cut(s)	50, 367
AlwI	GGATC	1 cut(s)	27
Aor51HI	AGCGCT	1 cut(s)	23
ApeKI	GCWGC	1 cut(s)	673
AspLEI	GCGC	2 cut(s)	24, 105
AspS9I	GGNCC	1 cut(s)	112
AsuHPI	GGTGA	4 cut(s)	169, 269, 538, 551
AvaII	GGWCC	1 cut(s)	112
BbvI	GCAGC	1 cut(s)	685
BccI	CCATC	2 cut(s)	59, 557
BcgI	CGANNNNNNTGC	6 cut(s)	143, 177, 197, 231, 512, 546
BciT130I	CCWGG	1 cut(s)	636
BclI	TGATCA	1 cut(s)	436
BcoDI	GTCTC	2 cut(s)	50, 367
BcuI	ACTAGT	1 cut(s)	613
BfaI	CTAG	1 cut(s)	614
BfmI	CTRYAG	1 cut(s)	553
BfoI	RGCGCY	2 cut(s)	25, 106
BfuAI	ACCTGC	1 cut(s)	514
BisI	GCNGC	1 cut(s)	674
BlsI	GCNGC	1 cut(s)	675
Bme1390I	CCNGG	1 cut(s)	636
Bme18I	GGWCC	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	112
BmiI	GGNNCC	2 cut(s)	114, 330
BmrFI	CCNGG	1 cut(s)	636
BmsI	GCATC	2 cut(s)	115, 439
BsaBI	GATNNNNATC	1 cut(s)	8
BsaI	GGTCTC	1 cut(s)	367
BsaJI	CCNNGG	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	1 cut(s)	575
Bse118I	RCCGGY	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	159
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	636
BseDI	CCNNGG	1 cut(s)	181
BseGI	GGATG	3 cut(s)	9, 51, 148
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	575
BseMI	GCAATG	1 cut(s)	159
BseMII	CTCAG	1 cut(s)	135
BseRI	GAGGAG	1 cut(s)	321
BseXI	GCAGC	1 cut(s)	685
BsgI	GTGCAG	1 cut(s)	679
BsiSI	CCGG	1 cut(s)	165
BslFI	GGGAC	2 cut(s)	98, 531
BslI	CCNNNNNNNGG	1 cut(s)	575
BsmAI	GTCTC	2 cut(s)	50, 367
BsmBI	CGTCTC	1 cut(s)	50
BsmFI	GGGAC	2 cut(s)	98, 531
Bso31I	GGTCTC	1 cut(s)	367
Bsp143I	GATC	4 cut(s)	3, 32, 156, 436
BspACI	CCGC	2 cut(s)	36, 204
BspCNI	CTCAG	1 cut(s)	134
BspLI	GGNNCC	2 cut(s)	114, 330
BspMI	ACCTGC	1 cut(s)	514
BspPI	GGATC	1 cut(s)	27
BspTNI	GGTCTC	1 cut(s)	367
BsrDI	GCAATG	1 cut(s)	159
BsrFI	RCCGGY	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	181
BssMI	GATC	4 cut(s)	3, 32, 156, 436
Bst2UI	CCWGG	1 cut(s)	636
Bst4CI	ACNGT	2 cut(s)	283, 397
BstC8I	GCNNGC	5 cut(s)	206, 473, 477, 481, 485
BstDEI	CTNAG	2 cut(s)	121, 592
BstEII	GGTNACC	1 cut(s)	578
BstF5I	GGATG	3 cut(s)	9, 51, 148
BstH2I	RGCGCY	2 cut(s)	25, 106
BstHHI	GCGC	2 cut(s)	24, 105
BstKTI	GATC	4 cut(s)	6, 35, 159, 439
BstMAI	GTCTC	2 cut(s)	50, 367
BstMBI	GATC	4 cut(s)	3, 32, 156, 436
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 657
BstNI	CCWGG	1 cut(s)	636
BstNSI	RCATGY	1 cut(s)	491
BstPI	GGTNACC	1 cut(s)	578
BstSCI	CCNGG	1 cut(s)	634
BstSFI	CTRYAG	1 cut(s)	553
BstV1I	GCAGC	1 cut(s)	685
BtsCI	GGATG	3 cut(s)	9, 51, 148
BtsI	GCAGTG	1 cut(s)	563
BtsIMutI	CAGTG	2 cut(s)	279, 563
BveI	ACCTGC	1 cut(s)	514
Cac8I	GCNNGC	5 cut(s)	206, 473, 477, 481, 485
CfoI	GCGC	2 cut(s)	24, 105
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	491
CviAII	CATG	3 cut(s)	109, 488, 497
CviJI	RGCY	6 cut(s)	186, 329, 433, 517, 538, 651
CviKI_1	RGCY	6 cut(s)	186, 329, 433, 517, 538, 651
CviQI	GTAC	1 cut(s)	491
DdeI	CTNAG	2 cut(s)	121, 592
DpnI	GATC	4 cut(s)	5, 34, 158, 438
DpnII	GATC	4 cut(s)	3, 32, 156, 436
Eco31I	GGTCTC	1 cut(s)	367
Eco32I	GATATC	1 cut(s)	608
Eco47I	GGWCC	1 cut(s)	112
Eco47III	AGCGCT	1 cut(s)	23
Eco91I	GGTNACC	1 cut(s)	578
EcoO65I	GGTNACC	1 cut(s)	578
EcoRII	CCWGG	1 cut(s)	634
EcoRV	GATATC	1 cut(s)	608
Esp3I	CGTCTC	1 cut(s)	50
FaeI	CATG	3 cut(s)	112, 491, 500
FaqI	GGGAC	2 cut(s)	98, 531
FatI	CATG	3 cut(s)	108, 487, 496
FauI	CCCGC	1 cut(s)	197
FbaI	TGATCA	1 cut(s)	436
Fnu4HI	GCNGC	1 cut(s)	674
FokI	GGATG	2 cut(s)	38, 155
Fsp4HI	GCNGC	1 cut(s)	674
FspBI	CTAG	1 cut(s)	614
GlaI	GCGC	2 cut(s)	23, 104
GluI	GCNGC	1 cut(s)	674
HaeII	RGCGCY	2 cut(s)	25, 106
HapII	CCGG	1 cut(s)	165
HhaI	GCGC	2 cut(s)	24, 105
Hin1II	CATG	3 cut(s)	112, 491, 500
Hin6I	GCGC	2 cut(s)	22, 103
HinP1I	GCGC	2 cut(s)	22, 103
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	5 cut(s)	389, 407, 529, 631, 639
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	4 cut(s)	169, 269, 538, 551
Hpy188I	TCNGA	3 cut(s)	124, 154, 605
Hpy188III	TCNNGA	3 cut(s)	91, 425, 643
HpyAV	CCTTC	4 cut(s)	132, 368, 452, 593
HpyCH4III	ACNGT	2 cut(s)	283, 397
HpyCH4IV	ACGT	2 cut(s)	243, 441
HpyCH4V	TGCA	4 cut(s)	452, 487, 523, 660
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 657
HpyF3I	CTNAG	2 cut(s)	121, 592
HpySE526I	ACGT	2 cut(s)	243, 441
Hsp92II	CATG	3 cut(s)	112, 491, 500
HspAI	GCGC	2 cut(s)	22, 103
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	4 cut(s)	3, 32, 156, 436
LmnI	GCTCC	1 cut(s)	334
LpnPI	CCDG	8 cut(s)	178, 204, 389, 390, 489, 509, 621, 648
Lsp1109I	GCAGC	1 cut(s)	685
LweI	GCATC	2 cut(s)	115, 439
MaeI	CTAG	1 cut(s)	614
MaeII	ACGT	2 cut(s)	243, 441
MaeIII	GTNAC	3 cut(s)	397, 557, 578
MalI	GATC	4 cut(s)	5, 34, 158, 438
MboI	GATC	4 cut(s)	3, 32, 156, 436
MboII	GAAGA	1 cut(s)	467
MluCI	AATT	1 cut(s)	587
MlyI	GAGTC	1 cut(s)	416
MmeI	TCCRAC	3 cut(s)	55, 359, 660
MnlI	CCTC	4 cut(s)	191, 342, 365, 423
MseI	TTAA	2 cut(s)	306, 363
MslI	CAYNNNNRTG	1 cut(s)	444
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	1 cut(s)	636
MvaI	CCWGG	1 cut(s)	636
MwoI	GCNNNNNNNGC	2 cut(s)	102, 657
NdeII	GATC	4 cut(s)	3, 32, 156, 436
NlaIII	CATG	3 cut(s)	112, 491, 500
NlaIV	GGNNCC	2 cut(s)	114, 330
NmeAIII	GCCGAG	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	557
NspI	RCATGY	1 cut(s)	491
PaqCI	CACCTGC	1 cut(s)	514
PfeI	GAWTC	4 cut(s)	389, 529, 631, 639
PflFI	GACNNNGTC	1 cut(s)	599
PfoI	TCCNGGA	1 cut(s)	634
PkrI	GCNGC	1 cut(s)	675
PleI	GAGTC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	415
Psp6I	CCWGG	1 cut(s)	634
PspEI	GGTNACC	1 cut(s)	578
PspGI	CCWGG	1 cut(s)	634
PspN4I	GGNNCC	2 cut(s)	114, 330
PspPI	GGNCC	1 cut(s)	112
PsyI	GACNNNGTC	1 cut(s)	599
RsaI	GTAC	1 cut(s)	492
RsaNI	GTAC	1 cut(s)	491
RseI	CAYNNNNRTG	1 cut(s)	444
SaqAI	TTAA	2 cut(s)	306, 363
SatI	GCNGC	1 cut(s)	674
Sau3AI	GATC	4 cut(s)	3, 32, 156, 436
Sau96I	GGNCC	1 cut(s)	112
SchI	GAGTC	1 cut(s)	416
ScrFI	CCNGG	1 cut(s)	636
SetI	ASST	9 cut(s)	246, 379, 444, 519, 528, 540, 585, 629, 653
SfaNI	GCATC	2 cut(s)	115, 439
SfcI	CTRYAG	1 cut(s)	553
SinI	GGWCC	1 cut(s)	112
SmiMI	CAYNNNNRTG	1 cut(s)	444
SpeI	ACTAGT	1 cut(s)	613
Sse9I	AATT	1 cut(s)	587
SsiI	CCGC	2 cut(s)	36, 204
SspMI	CTAG	1 cut(s)	614
StyD4I	CCNGG	1 cut(s)	634
TaaI	ACNGT	2 cut(s)	283, 397
TaiI	ACGT	2 cut(s)	246, 444
TaqI	TCGA	1 cut(s)	217
TaqII	GACCGA	1 cut(s)	45
TasI	AATT	1 cut(s)	587
TatI	WGTACW	1 cut(s)	490
TfiI	GAWTC	4 cut(s)	389, 529, 631, 639
Tru1I	TTAA	2 cut(s)	306, 363
Tru9I	TTAA	2 cut(s)	306, 363
TscAI	CASTG	2 cut(s)	286, 570
TseFI	GTSAC	1 cut(s)	557
TseI	GCWGC	1 cut(s)	673
Tsp45I	GTSAC	1 cut(s)	557
TspDTI	ATGAA	3 cut(s)	97, 485, 611
TspRI	CASTG	2 cut(s)	286, 570
Tth111I	GACNNNGTC	1 cut(s)	599
VpaK11BI	GGWCC	1 cut(s)	112
XceI	RCATGY	1 cut(s)	491
XspI	CTAG	1 cut(s)	614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.