Rorug05G0480900

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004852
Physical Location & Seq
Reverse (-)
66206780 .. 66208246
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0480900.1

Sequence Viewer

Length: 1467 bp
ATGGCAAAGGATCCAGTTGCTGGATTTAGCTTCCGCAGTCTTTGCTCCATTGTCTCGGTGCTGTGTGCATGGTCCTCCATCTCATTCATTTACTGGTGCCATCGGTATGGTCCCTGCTATTCTCTGTACCAAAAAATGGAGCAGAAGCAAAGCCAGATCAGTGAACTTCTTTCATTCCCTTCTGCCTGGAATCAGCTCGCTCTTTCCTCGAATCCGCCCCCAAAACTCCTCAAAATTGCTCTATTCGTCAAGAAATGGCCTCATAGATCTCAAGCAGGAGGGCTTGAACGCCATGCTTTGACCCTCCACCTTGCACTTGCCAAAAGAGGTCATGAACTTCACATCTTCACCACTTCTCCTTCAAATTCCTCCTTCCCAAGGTACCCATTGAACAATTTATGCTTTCACCTCTCAAAACCAACAGCTTCTGGGTATCTGGACCAAGCTTTAGTTTGGAAGCTATTTCAAACTCAAAACTCAACTGGAAGACCTTTTGATGTGATACACACAGAAAGTGTCGGTCTCTTGCATACTCGATCACGCAATCAGACGAATCTGGCTGTTACTTGGCATGGGATTGCATATGAAACTATCCATTCTGACATCATACAAGAACTTCTTCGGAGCCCTGAAGAACCACAGGGGTATGCATTGGCTGAAAGAGTTACCAAGGTTGTCGAAGAGGTGAGGTTCTTCCCCAGTTACGCTCACCATGTTGCTACTAGTGACCATGTCGGCGATGTACTTAAGAGGATTTACATGATCCCAGATGAACGTGTACATATTATTCTTAATGGTGTTGATGAGGAGGTTTTCAAGCCAGACATTGTCAAAGGGAAGGATTTCAAGAAAAAGTTTGGGGTGCCTGAATCTAAGGCGTTGGTTTTAGGAATGGCTGGGAGGTTGGTGAAGGATAAAGGACATCCGCTCATGTTTGAGGCTTTGAAACAAATGCTCAGTGAAAATGAAGCATTCAGGCAGAGTGTTGTCGTTCTAGTTGCTGGCAATGGTCCTTGGGGAGCTAGGTACAGAGATCTTGGATCTAATGTACTTGTTTTAGGGCCACTAGAACAAGCTCAGCTTGCTGACTTCTACAATGCAATAGATATATTCGTGAACCCAACTCTTCGTGCTCAGGGATTGGATCATACTTTGTTGGAAGCAATGCTCTCTGGTAAGCCAGTAATGGCAACAAGACTTGCAAGCATTACAGGCTCTGTGGTTGTTGGAAGAGAAGTCGGTTATACATTTTCACCGACAATAGCTTCATTAAAGAAGACCCTCTATAGAGTTTGGGATGATGGCAGAGGAGATCTAAAGCAGAAAGGTCAGGCAGCAAAGCAAAGAGGCTTGCAATTGTTCACTGCTACCAAAATGGCAGCTGCTTATGAAAGGCTATTCCTTTGTTTATCCAATGACGAAAAAAATGGGGAAAATTTCTGTCAATATCAAACTCCATTACACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

488

Amino Acids

54.7

Weight (kDa)

9.16

Isoelectric Point (pI)

33.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_4 PF13439 93 - 270 7.9e-18 Glycosyltransferase Family 4
Glyco_trans_4_4 PF13579 93 - 266 7.4e-09 Glycosyl transferase 4-like domain
Glycos_transf_1 PF00534 284 - 446 6.1e-15 Glycosyl transferases group 1
Glyco_trans_1_4 PF13692 295 - 432 2.7e-16 Glycosyl transferases group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 381
AccB1I GGYRCC 3 cut(s) 96, 381, 862
AccB7I CCANNNNNTGG 2 cut(s) 20, 136
AccBSI CCGCTC 1 cut(s) 928
AciI CCGC 3 cut(s) 34, 215, 926
AclWI GGATC 5 cut(s) 5, 18, 757, 1048, 1152
AcsI RAATTY 2 cut(s) 364, 1435
AcuI CTGAAG 1 cut(s) 651
AfaI GTAC 6 cut(s) 128, 383, 744, 780, 1028, 1050
AfiI CCNNNNNNNGG 3 cut(s) 20, 136, 378
AflII CTTAAG 1 cut(s) 746
AflIII ACRYGT 1 cut(s) 775
AgsI TTSAA 7 cut(s) 287, 363, 391, 467, 817, 847, 946
AhlI ACTAGT 1 cut(s) 722
AjnI CCWGG 1 cut(s) 185
Alw21I GWGCWC 1 cut(s) 1135
Alw26I GTCTC 2 cut(s) 58, 527
AlwI GGATC 5 cut(s) 5, 18, 757, 1048, 1152
AlwNI CAGNNNCTG 3 cut(s) 20, 428, 1217
AoxI GGCC 2 cut(s) 257, 1061
ApeKI GCWGC 3 cut(s) 1334, 1379, 1382
ApoI RAATTY 2 cut(s) 364, 1435
Asp700I GAANNNNTTC 2 cut(s) 618, 842
Asp718I GGTACC 1 cut(s) 381
AspS9I GGNCC 5 cut(s) 72, 110, 439, 1010, 1061
AsuHPI GGTGA 6 cut(s) 340, 398, 697, 701, 919, 1245
AvaII GGWCC 4 cut(s) 72, 110, 439, 1010
BamHI GGATCC 1 cut(s) 10
BanI GGYRCC 3 cut(s) 96, 381, 862
BanII GRGCYC 1 cut(s) 629
BbsI GAAGAC 2 cut(s) 493, 1283
Bbv12I GWGCWC 1 cut(s) 1135
BbvI GCAGC 3 cut(s) 1346, 1369, 1391
BccI CCATC 3 cut(s) 86, 108, 1295
BciT130I CCWGG 1 cut(s) 187
BcoDI GTCTC 2 cut(s) 58, 527
BcuI ACTAGT 1 cut(s) 722
BfaI CTAG 4 cut(s) 723, 995, 1023, 1067
BfmI CTRYAG 1 cut(s) 1285
BfrI CTTAAG 1 cut(s) 746
BglII AGATCT 3 cut(s) 266, 1033, 1312
BisI GCNGC 3 cut(s) 1335, 1380, 1383
BlpI GCTNAGC 1 cut(s) 1077
BlsI GCNGC 3 cut(s) 1336, 1381, 1384
Bme1390I CCNGG 1 cut(s) 187
Bme18I GGWCC 4 cut(s) 72, 110, 439, 1010
BmgT120I GGNCC 5 cut(s) 72, 110, 439, 1010, 1061
BmiI GGNNCC 6 cut(s) 12, 98, 112, 383, 626, 864
BmrFI CCNGG 1 cut(s) 187
BmrI ACTGGG 1 cut(s) 693
BmuI ACTGGG 1 cut(s) 693
BpiI GAAGAC 2 cut(s) 493, 1283
Bpu10I CCTNAGC 1 cut(s) 1134
Bpu1102I GCTNAGC 1 cut(s) 1077
BpuEI CTTGAG 1 cut(s) 255
BsaI GGTCTC 1 cut(s) 527
BsaJI CCNNGG 3 cut(s) 377, 669, 1013
BsaXI ACNNNNNCTCC 2 cut(s) 340, 370
Bsc4I CCNNNNNNNGG 3 cut(s) 20, 136, 378
Bse1I ACTGG 5 cut(s) 14, 98, 487, 699, 1181
Bse3DI GCAATG 2 cut(s) 1012, 1170
BseBI CCWGG 1 cut(s) 187
BseDI CCNNGG 3 cut(s) 377, 669, 1013
BseGI GGATG 2 cut(s) 922, 1303
BseLI CCNNNNNNNGG 3 cut(s) 20, 136, 378
BseMI GCAATG 2 cut(s) 1012, 1170
BseMII CTCAG 3 cut(s) 970, 1091, 1148
BseNI ACTGG 5 cut(s) 14, 98, 487, 699, 1181
BseRI GAGGAG 3 cut(s) 218, 821, 1323
BseXI GCAGC 3 cut(s) 1346, 1369, 1391
BseYI CCCAGC 1 cut(s) 896
BshFI GGCC 2 cut(s) 259, 1063
BshNI GGYRCC 3 cut(s) 96, 381, 862
BsiHKAI GWGCWC 1 cut(s) 1135
BslFI GGGAC 1 cut(s) 96
BslI CCNNNNNNNGG 3 cut(s) 20, 136, 378
BsmAI GTCTC 2 cut(s) 58, 527
BsmFI GGGAC 1 cut(s) 96
BsmI GAATGC 1 cut(s) 971
BsnI GGCC 2 cut(s) 259, 1063
Bso31I GGTCTC 1 cut(s) 527
Bsp1286I GDGCHC 2 cut(s) 629, 1135
Bsp1407I TGTACA 1 cut(s) 778
Bsp143I GATC 9 cut(s) 10, 156, 266, 536, 762, 1033, 1040, 1144, 1312
Bsp1720I GCTNAGC 1 cut(s) 1077
BspACI CCGC 3 cut(s) 34, 215, 926
BspANI GGCC 2 cut(s) 259, 1063
BspCNI CTCAG 3 cut(s) 969, 1090, 1147
BspHI TCATGA 1 cut(s) 331
BspLI GGNNCC 6 cut(s) 12, 98, 112, 383, 626, 864
BspPI GGATC 5 cut(s) 5, 18, 757, 1048, 1152
BspT107I GGYRCC 3 cut(s) 96, 381, 862
BspTI CTTAAG 1 cut(s) 746
BspTNI GGTCTC 1 cut(s) 527
BsrBI CCGCTC 1 cut(s) 928
BsrDI GCAATG 2 cut(s) 1012, 1170
BsrGI TGTACA 1 cut(s) 778
BsrI ACTGG 5 cut(s) 14, 98, 487, 699, 1181
BssECI CCNNGG 3 cut(s) 377, 669, 1013
BssMI GATC 9 cut(s) 10, 156, 266, 536, 762, 1033, 1040, 1144, 1312
BssT1I CCWWGG 3 cut(s) 377, 669, 1013
Bst2UI CCWGG 1 cut(s) 187
Bst6I CTCTTC 3 cut(s) 675, 1131, 1225
BstAFI CTTAAG 1 cut(s) 746
BstAPI GCANNNNNTGC 1 cut(s) 42
BstAUI TGTACA 1 cut(s) 778
BstC8I GCNNGC 5 cut(s) 198, 1003, 1083, 1204, 1352
BstDEI CTNAG 4 cut(s) 873, 956, 1077, 1134
BstENI CCTNNNNNAGG 1 cut(s) 376
BstF5I GGATG 2 cut(s) 922, 1303
BstKTI GATC 9 cut(s) 13, 159, 269, 539, 765, 1036, 1043, 1147, 1315
BstMAI GTCTC 2 cut(s) 58, 527
BstMBI GATC 9 cut(s) 10, 156, 266, 536, 762, 1033, 1040, 1144, 1312
BstMWI GCNNNNNNNGC 3 cut(s) 42, 1082, 1212
BstNI CCWGG 1 cut(s) 187
BstSCI CCNGG 1 cut(s) 185
BstSFI CTRYAG 1 cut(s) 1285
BstV1I GCAGC 3 cut(s) 1346, 1369, 1391
BstV2I GAAGAC 2 cut(s) 493, 1283
BstX2I RGATCY 5 cut(s) 10, 266, 1033, 1040, 1312
BstXI CCANNNNNNTGG 1 cut(s) 107
BstYI RGATCY 5 cut(s) 10, 266, 1033, 1040, 1312
BsuRI GGCC 2 cut(s) 259, 1063
BtgZI GCGATG 1 cut(s) 753
BtsCI GGATG 2 cut(s) 922, 1303
BtsI GCAGTG 1 cut(s) 1362
BtsIMutI CAGTG 3 cut(s) 166, 964, 1362
Cac8I GCNNGC 5 cut(s) 198, 1003, 1083, 1204, 1352
CaiI CAGNNNCTG 3 cut(s) 20, 428, 1217
CciI TCATGA 1 cut(s) 331
Cfr13I GGNCC 5 cut(s) 72, 110, 439, 1010, 1061
Csp6I GTAC 6 cut(s) 127, 382, 743, 779, 1027, 1049
CviAII CATG 8 cut(s) 69, 293, 332, 572, 713, 731, 760, 931
CviQI GTAC 6 cut(s) 127, 382, 743, 779, 1027, 1049
DdeI CTNAG 4 cut(s) 873, 956, 1077, 1134
DpnI GATC 9 cut(s) 12, 158, 268, 538, 764, 1035, 1042, 1146, 1314
DpnII GATC 9 cut(s) 10, 156, 266, 536, 762, 1033, 1040, 1144, 1312
Eam1104I CTCTTC 3 cut(s) 675, 1131, 1225
EarI CTCTTC 3 cut(s) 675, 1131, 1225
EciI GGCGGA 1 cut(s) 204
Eco130I CCWWGG 3 cut(s) 377, 669, 1013
Eco24I GRGCYC 1 cut(s) 629
Eco31I GGTCTC 1 cut(s) 527
Eco47I GGWCC 4 cut(s) 72, 110, 439, 1010
Eco57I CTGAAG 1 cut(s) 651
EcoNI CCTNNNNNAGG 1 cut(s) 376
EcoRII CCWGG 1 cut(s) 185
EcoT14I CCWWGG 3 cut(s) 377, 669, 1013
EcoT22I ATGCAT 1 cut(s) 652
EcoT38I GRGCYC 1 cut(s) 629
ErhI CCWWGG 3 cut(s) 377, 669, 1013
FaeI CATG 8 cut(s) 72, 296, 335, 575, 716, 734, 763, 934
FalI AAGNNNNNCTT 4 cut(s) 603, 635, 1065, 1097
FaqI GGGAC 1 cut(s) 96
FatI CATG 8 cut(s) 68, 292, 331, 571, 712, 730, 759, 930
FauNDI CATATG 1 cut(s) 583
Fnu4HI GCNGC 3 cut(s) 1335, 1380, 1383
FokI GGATG 2 cut(s) 909, 1310
FriOI GRGCYC 1 cut(s) 629
Fsp4HI GCNGC 3 cut(s) 1335, 1380, 1383
FspBI CTAG 4 cut(s) 723, 995, 1023, 1067
GluI GCNGC 3 cut(s) 1335, 1380, 1383
GsaI CCCAGC 1 cut(s) 900
HaeIII GGCC 2 cut(s) 259, 1063
Hin1II CATG 8 cut(s) 72, 296, 335, 575, 716, 734, 763, 934
HindIII AAGCTT 1 cut(s) 444
HinfI GANTC 4 cut(s) 190, 211, 553, 869
HphI GGTGA 6 cut(s) 340, 398, 697, 701, 919, 1245
Hpy166II GTNNAC 4 cut(s) 164, 779, 1117, 1362
Hpy188I TCNGA 3 cut(s) 549, 601, 624
Hpy188III TCNNGA 5 cut(s) 250, 332, 437, 847, 1114
Hpy8I GTNNAC 4 cut(s) 164, 779, 1117, 1362
HpyAV CCTTC 5 cut(s) 189, 369, 382, 832, 904
HpyCH4IV ACGT 1 cut(s) 775
HpyCH4V TGCA 8 cut(s) 68, 314, 529, 581, 650, 1100, 1202, 1354
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 1082, 1212
HpyF3I CTNAG 4 cut(s) 873, 956, 1077, 1134
HpySE526I ACGT 1 cut(s) 775
Hsp92II CATG 8 cut(s) 72, 296, 335, 575, 716, 734, 763, 934
KpnI GGTACC 1 cut(s) 385
Kzo9I GATC 9 cut(s) 10, 156, 266, 536, 762, 1033, 1040, 1144, 1312
LmnI GCTCC 4 cut(s) 50, 139, 624, 1019
Lsp1109I GCAGC 3 cut(s) 1346, 1369, 1391
MaeI CTAG 4 cut(s) 723, 995, 1023, 1067
MaeII ACGT 1 cut(s) 775
MaeIII GTNAC 4 cut(s) 562, 664, 701, 725
MalI GATC 9 cut(s) 12, 158, 268, 538, 764, 1035, 1042, 1146, 1314
MbiI CCGCTC 1 cut(s) 928
MboI GATC 9 cut(s) 10, 156, 266, 536, 762, 1033, 1040, 1144, 1312
MboII GAAGA 9 cut(s) 337, 498, 611, 644, 685, 692, 1118, 1242, 1288
MfeI CAATTG 1 cut(s) 1355
MflI RGATCY 5 cut(s) 10, 266, 1033, 1040, 1312
MhlI GDGCHC 2 cut(s) 629, 1135
MluCI AATT 5 cut(s) 234, 364, 394, 1355, 1435
MmeI TCCRAC 2 cut(s) 1137, 1207
Mph1103I ATGCAT 1 cut(s) 652
MroXI GAANNNNTTC 2 cut(s) 618, 842
MseI TTAA 3 cut(s) 747, 792, 1271
MslI CAYNNNNRTG 1 cut(s) 105
MspA1I CMGCKG 1 cut(s) 1382
MspCI CTTAAG 1 cut(s) 746
MspR9I CCNGG 1 cut(s) 187
MunI CAATTG 1 cut(s) 1355
Mva1269I GAATGC 1 cut(s) 971
MvaI CCWGG 1 cut(s) 187
MwoI GCNNNNNNNGC 3 cut(s) 42, 1082, 1212
NdeI CATATG 1 cut(s) 583
NdeII GATC 9 cut(s) 10, 156, 266, 536, 762, 1033, 1040, 1144, 1312
NlaIII CATG 8 cut(s) 72, 296, 335, 575, 716, 734, 763, 934
NlaIV GGNNCC 6 cut(s) 12, 98, 112, 383, 626, 864
NmuCI GTSAC 1 cut(s) 725
NsiI ATGCAT 1 cut(s) 652
PagI TCATGA 1 cut(s) 331
PctI GAATGC 1 cut(s) 971
PdmI GAANNNNTTC 2 cut(s) 618, 842
PfeI GAWTC 4 cut(s) 190, 211, 553, 869
PflFI GACNNNGTC 2 cut(s) 731, 827
PflMI CCANNNNNTGG 2 cut(s) 20, 136
PkrI GCNGC 3 cut(s) 1336, 1381, 1384
Psp6I CCWGG 1 cut(s) 185
PspFI CCCAGC 1 cut(s) 896
PspGI CCWGG 1 cut(s) 185
PspN4I GGNNCC 6 cut(s) 12, 98, 112, 383, 626, 864
PspPI GGNCC 5 cut(s) 72, 110, 439, 1010, 1061
PstNI CAGNNNCTG 3 cut(s) 20, 428, 1217
PsuI RGATCY 5 cut(s) 10, 266, 1033, 1040, 1312
PsyI GACNNNGTC 2 cut(s) 731, 827
PvuII CAGCTG 1 cut(s) 1382
RsaI GTAC 6 cut(s) 128, 383, 744, 780, 1028, 1050
RsaNI GTAC 6 cut(s) 127, 382, 743, 779, 1027, 1049
RseI CAYNNNNRTG 1 cut(s) 105
SaqAI TTAA 3 cut(s) 747, 792, 1271
SatI GCNGC 3 cut(s) 1335, 1380, 1383
Sau3AI GATC 9 cut(s) 10, 156, 266, 536, 762, 1033, 1040, 1144, 1312
Sau96I GGNCC 5 cut(s) 72, 110, 439, 1010, 1061
ScrFI CCNGG 1 cut(s) 187
SduI GDGCHC 2 cut(s) 629, 1135
SfcI CTRYAG 1 cut(s) 1285
SinI GGWCC 4 cut(s) 72, 110, 439, 1010
SmiMI CAYNNNNRTG 1 cut(s) 105
SmlI CTYRAG 2 cut(s) 270, 746
SmoI CTYRAG 2 cut(s) 270, 746
SpeI ACTAGT 1 cut(s) 722
Sse9I AATT 5 cut(s) 234, 364, 394, 1355, 1435
SsiI CCGC 3 cut(s) 34, 215, 926
SspMI CTAG 4 cut(s) 723, 995, 1023, 1067
StyD4I CCNGG 1 cut(s) 185
StyI CCWWGG 3 cut(s) 377, 669, 1013
TaiI ACGT 1 cut(s) 778
TaqI TCGA 3 cut(s) 209, 535, 678
TaqII GACCGA 1 cut(s) 509
TasI AATT 5 cut(s) 234, 364, 394, 1355, 1435
TatI WGTACW 3 cut(s) 742, 778, 1048
TfiI GAWTC 4 cut(s) 190, 211, 553, 869
Tru1I TTAA 3 cut(s) 747, 792, 1271
Tru9I TTAA 3 cut(s) 747, 792, 1271
TscAI CASTG 3 cut(s) 166, 964, 1369
TseFI GTSAC 1 cut(s) 725
TseI GCWGC 3 cut(s) 1334, 1379, 1382
Tsp45I GTSAC 1 cut(s) 725
TspDTI ATGAA 8 cut(s) 76, 162, 348, 600, 786, 981, 1257, 1404
TspRI CASTG 3 cut(s) 166, 964, 1369
Tth111I GACNNNGTC 2 cut(s) 731, 827
Van91I CCANNNNNTGG 2 cut(s) 20, 136
Vha464I CTTAAG 1 cut(s) 746
VpaK11BI GGWCC 4 cut(s) 72, 110, 439, 1010
XagI CCTNNNNNAGG 1 cut(s) 376
XapI RAATTY 2 cut(s) 364, 1435
XmnI GAANNNNTTC 2 cut(s) 618, 842
XspI CTAG 4 cut(s) 723, 995, 1023, 1067
Zsp2I ATGCAT 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.