Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004852

Physical Location & Seq

Genomic Coordinates Reverse (-)

88763461 .. 88765463

Gene Structure 2003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG558000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGTCCAGTAGCACCCAGAGGCAGAGGCGATTCTGTTACTTTTATATCACCGCGTCACAGTGCGAGCCAATTGACCAACCTTACTTGGGCAATGCTCTGATCAAAAATCTATTCTTCAAGCTAACTCGTCCCTTTCGTCCTTGGATTGACCCACGCGGTGCCAACATGATTCCCATCCATATAATGCTCTTCAACCAACCCGGAAGCCGTCTCTCCATTTATTCTCCAATCGTGTTTGGTGAGCCAAAACTCGTGACTGAAAGACGGTTTATGCTCCCTCTCTCAGATGTCATAACTGAAATTGGTGTGTATAAGGACATCATTGAGGGGTATCTTTCCACCATGGGAGTCCGACGAAATATGCACCCAGATGCTATTGGAAAAATACATGACGTGATTCAAGTGGCCGACCCCGGGTTTCCTATTGATGTGACAATATATGACGTGACTGTTGATGTATTGGGCAAGTCTGAAGTTGTTCCGCCGACTATATCAGTGTTTCACATTGTGGAACAAGTTGGACTTGATAGTTTGGAAGCTACTATCAGACAGAAGCCATGTGCTATTTGTCGTGAGAGCCTTGATCACGTTTATGACGCAGAAGAAGGGATTATTCGCTTGCCCTGCTTGCACCTTTTTCATGCAGATTGCCTTATCCAGTGTTTGAATGATCATGTGCATGTGTGCCCCCTCTGCAATTACCCACTGCCTACTGTGGAACTTGGTGAACCATCCAAACCCTCGGGGCAAATGGATTGGCGTGTGTTGCTCGTGATGTCGGCATGTGGTATAATAACTGTTAAGCTTCTTTGCAGACTATTAAAGCGACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

277

Amino Acids

31.34

Weight (kDa)

6.5

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	187 - 233	2.5e-06	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004852)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45020 FvH4_3g45040 FvH4_3g45051 FvH4_3g45051 FvH4_4g04731 FvH4_4g08081 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850 FvH4_5g09850
rosa_chinensis	RchiOBHm_Chr1g0327511 RchiOBHm_Chr2g0145621 RchiOBHm_Chr5g0082901
rosa_laevigata	RLG00000025408
rosa_multiflora	Rmu_sc0004031.1_g000014 Rmu_sc0007172.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001500 Rroxscaffold_2G00154430 Rroxscaffold_6G00424730
rosa_rugosa	Rorug05G0480700 Rorug05G0480800 Rorug05G0480900 Rorug05G0481200 Rorug05G0481300 Rorug05G0481400 Rorug05G0481500
rosa_samantha	Rh5BG558000 Rh5DG566600
rosa_wichuraiana	Rw5G049760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	158
AccII	CGCG	2 cut(s)	53, 156
AciI	CCGC	3 cut(s)	51, 156, 482
AcoI	YGGCCR	1 cut(s)	405
AcuI	CTGAAG	1 cut(s)	492
AdeI	CACNNNGTG	2 cut(s)	158, 508
AfiI	CCNNNNNNNGG	2 cut(s)	86, 414
AgsI	TTSAA	4 cut(s)	118, 193, 401, 667
AjiI	CACGTC	2 cut(s)	394, 445
AluBI	AGCT	3 cut(s)	121, 539, 805
AluI	AGCT	3 cut(s)	121, 539, 805
Alw26I	GTCTC	1 cut(s)	215
Ama87I	CYCGRG	2 cut(s)	413, 742
AoxI	GGCC	1 cut(s)	405
Asp700I	GAANNNNTTC	1 cut(s)	477
AsuC2I	CCSGG	3 cut(s)	201, 414, 415
AsuHPI	GGTGA	3 cut(s)	40, 251, 737
AvaI	CYCGRG	2 cut(s)	413, 742
BaeGI	GKGCMC	1 cut(s)	689
BanI	GGYRCC	1 cut(s)	158
BauI	CACGAG	2 cut(s)	251, 770
BccI	CCATC	2 cut(s)	182, 739
BceAI	ACGGC	1 cut(s)	192
BclI	TGATCA	3 cut(s)	99, 583, 670
BcnI	CCSGG	3 cut(s)	201, 414, 415
BcoDI	GTCTC	1 cut(s)	215
Bme1390I	CCNGG	3 cut(s)	201, 414, 415
BmeT110I	CYCGRG	2 cut(s)	413, 742
BmgBI	CACGTC	2 cut(s)	394, 445
BmiI	GGNNCC	1 cut(s)	160
BmrFI	CCNGG	3 cut(s)	201, 414, 415
BmsI	GCATC	1 cut(s)	361
BpuMI	CCSGG	3 cut(s)	201, 414, 415
BsaBI	GATNNNNATC	1 cut(s)	173
BsaJI	CCNNGG	5 cut(s)	140, 342, 412, 413, 741
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 414
Bse1I	ACTGG	2 cut(s)	6, 658
Bse3DI	GCAATG	1 cut(s)	97
Bse8I	GATNNNNATC	1 cut(s)	173
BseDI	CCNNGG	5 cut(s)	140, 342, 412, 413, 741
BseGI	GGATG	2 cut(s)	174, 731
BseJI	GATNNNNATC	1 cut(s)	173
BseLI	CCNNNNNNNGG	2 cut(s)	86, 414
BseMI	GCAATG	1 cut(s)	97
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	2 cut(s)	6, 658
BseSI	GKGCMC	1 cut(s)	689
Bsh1236I	CGCG	2 cut(s)	53, 156
BshFI	GGCC	1 cut(s)	407
BshNI	GGYRCC	1 cut(s)	158
BsiHKCI	CYCGRG	2 cut(s)	413, 742
BsiSI	CCGG	2 cut(s)	201, 414
BslFI	GGGAC	1 cut(s)	114
BslI	CCNNNNNNNGG	2 cut(s)	86, 414
BsmAI	GTCTC	1 cut(s)	215
BsmBI	CGTCTC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	407
BsoBI	CYCGRG	2 cut(s)	413, 742
Bsp1286I	GDGCHC	1 cut(s)	689
Bsp143I	GATC	3 cut(s)	99, 583, 670
Bsp19I	CCATGG	1 cut(s)	342
BspACI	CCGC	3 cut(s)	51, 156, 482
BspANI	GGCC	1 cut(s)	407
BspCNI	CTCAG	1 cut(s)	296
BspFNI	CGCG	2 cut(s)	53, 156
BspLI	GGNNCC	1 cut(s)	160
BspQI	GCTCTTC	1 cut(s)	194
BspT107I	GGYRCC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	97
BsrI	ACTGG	2 cut(s)	6, 658
BssECI	CCNNGG	5 cut(s)	140, 342, 412, 413, 741
BssMI	GATC	3 cut(s)	99, 583, 670
BssSI	CACGAG	2 cut(s)	251, 770
BssT1I	CCWWGG	2 cut(s)	140, 342
Bst2BI	CACGAG	2 cut(s)	251, 770
Bst4CI	ACNGT	5 cut(s)	60, 267, 451, 715, 799
Bst6I	CTCTTC	1 cut(s)	194
BstC8I	GCNNGC	3 cut(s)	65, 620, 629
BstDEI	CTNAG	1 cut(s)	283
BstDSI	CCRYGG	1 cut(s)	342
BstF5I	GGATG	2 cut(s)	174, 731
BstFNI	CGCG	2 cut(s)	53, 156
BstKTI	GATC	3 cut(s)	102, 586, 673
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	3 cut(s)	99, 583, 670
BstMWI	GCNNNNNNNGC	4 cut(s)	624, 628, 693, 766
BstNSI	RCATGY	2 cut(s)	683, 786
BstSCI	CCNGG	3 cut(s)	199, 412, 413
BstSLI	GKGCMC	1 cut(s)	689
BstUI	CGCG	2 cut(s)	53, 156
BsuRI	GGCC	1 cut(s)	407
BtgI	CCRYGG	1 cut(s)	342
BtrI	CACGTC	2 cut(s)	394, 445
BtsCI	GGATG	2 cut(s)	174, 731
BtsI	GCAGTG	1 cut(s)	704
BtsIMutI	CAGTG	4 cut(s)	65, 501, 665, 704
Cac8I	GCNNGC	3 cut(s)	65, 620, 629
Cfr9I	CCCGGG	1 cut(s)	413
CseI	GACGC	2 cut(s)	42, 605
CviAII	CATG	8 cut(s)	166, 343, 389, 558, 641, 674, 680, 783
CviJI	RGCY	9 cut(s)	67, 121, 207, 244, 407, 539, 556, 579, 805
CviKI_1	RGCY	9 cut(s)	67, 121, 207, 244, 407, 539, 556, 579, 805
DdeI	CTNAG	1 cut(s)	283
DpnI	GATC	3 cut(s)	101, 585, 672
DpnII	GATC	3 cut(s)	99, 583, 670
DraIII	CACNNNGTG	2 cut(s)	158, 508
EaeI	YGGCCR	1 cut(s)	405
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
EciI	GGCGGA	1 cut(s)	471
Eco130I	CCWWGG	2 cut(s)	140, 342
Eco57I	CTGAAG	1 cut(s)	492
Eco88I	CYCGRG	2 cut(s)	413, 742
EcoT14I	CCWWGG	2 cut(s)	140, 342
ErhI	CCWWGG	2 cut(s)	140, 342
Esp3I	CGTCTC	1 cut(s)	215
FaeI	CATG	8 cut(s)	169, 346, 392, 561, 644, 677, 683, 786
FalI	AAGNNNNNCTT	2 cut(s)	507, 539
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	8 cut(s)	165, 342, 388, 557, 640, 673, 679, 782
FbaI	TGATCA	3 cut(s)	99, 583, 670
FokI	GGATG	2 cut(s)	161, 718
HaeIII	GGCC	1 cut(s)	407
HapII	CCGG	2 cut(s)	201, 414
HgaI	GACGC	2 cut(s)	42, 605
Hin1II	CATG	8 cut(s)	169, 346, 392, 561, 644, 677, 683, 786
HindIII	AAGCTT	1 cut(s)	803
HinfI	GANTC	4 cut(s)	30, 169, 348, 397
HpaII	CCGG	2 cut(s)	201, 414
HphI	GGTGA	3 cut(s)	40, 251, 737
Hpy166II	GTNNAC	1 cut(s)	728
Hpy188I	TCNGA	5 cut(s)	99, 286, 353, 472, 548
Hpy188III	TCNNGA	3 cut(s)	253, 572, 772
Hpy8I	GTNNAC	1 cut(s)	728
Hpy99I	CGWCG	1 cut(s)	357
HpyAV	CCTTC	1 cut(s)	599
HpyCH4III	ACNGT	5 cut(s)	60, 267, 451, 715, 799
HpyCH4IV	ACGT	3 cut(s)	393, 444, 588
HpyCH4V	TGCA	6 cut(s)	364, 631, 644, 679, 696, 813
HpyF10VI	GCNNNNNNNGC	4 cut(s)	624, 628, 693, 766
HpyF3I	CTNAG	1 cut(s)	283
HpySE526I	ACGT	3 cut(s)	393, 444, 588
Hsp92II	CATG	8 cut(s)	169, 346, 392, 561, 644, 677, 683, 786
Ksp22I	TGATCA	3 cut(s)	99, 583, 670
Kzo9I	GATC	3 cut(s)	99, 583, 670
LguI	GCTCTTC	1 cut(s)	194
LmnI	GCTCC	1 cut(s)	279
LpnPI	CCDG	7 cut(s)	19, 29, 214, 381, 427, 637, 671
LweI	GCATC	1 cut(s)	361
MaeII	ACGT	3 cut(s)	393, 444, 588
MaeIII	GTNAC	5 cut(s)	35, 54, 253, 430, 445
MalI	GATC	3 cut(s)	101, 585, 672
MboI	GATC	3 cut(s)	99, 583, 670
MboII	GAAGA	3 cut(s)	106, 181, 614
MfeI	CAATTG	1 cut(s)	69
MhlI	GDGCHC	1 cut(s)	689
MluCI	AATT	3 cut(s)	69, 300, 697
MlyI	GAGTC	1 cut(s)	357
MmeI	TCCRAC	2 cut(s)	376, 499
MnlI	CCTC	6 cut(s)	12, 18, 288, 319, 701, 751
MroXI	GAANNNNTTC	1 cut(s)	477
MseI	TTAA	2 cut(s)	801, 821
MslI	CAYNNNNRTG	3 cut(s)	369, 591, 678
MspI	CCGG	2 cut(s)	201, 414
MspR9I	CCNGG	3 cut(s)	201, 414, 415
MunI	CAATTG	1 cut(s)	69
MvnI	CGCG	2 cut(s)	53, 156
MwoI	GCNNNNNNNGC	4 cut(s)	624, 628, 693, 766
NciI	CCSGG	3 cut(s)	201, 414, 415
NcoI	CCATGG	1 cut(s)	342
NdeII	GATC	3 cut(s)	99, 583, 670
NlaIII	CATG	8 cut(s)	169, 346, 392, 561, 644, 677, 683, 786
NlaIV	GGNNCC	1 cut(s)	160
NmuCI	GTSAC	4 cut(s)	54, 253, 430, 445
NspI	RCATGY	2 cut(s)	683, 786
PciSI	GCTCTTC	1 cut(s)	194
PcsI	WCGNNNNNNNCGW	1 cut(s)	133
PdmI	GAANNNNTTC	1 cut(s)	477
PfeI	GAWTC	3 cut(s)	30, 169, 397
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
PspN4I	GGNNCC	1 cut(s)	160
RseI	CAYNNNNRTG	3 cut(s)	369, 591, 678
SapI	GCTCTTC	1 cut(s)	194
SaqAI	TTAA	2 cut(s)	801, 821
Sau3AI	GATC	3 cut(s)	99, 583, 670
SchI	GAGTC	1 cut(s)	357
ScrFI	CCNGG	3 cut(s)	201, 414, 415
SduI	GDGCHC	1 cut(s)	689
SetI	ASST	8 cut(s)	82, 123, 396, 447, 541, 591, 636, 807
SfaNI	GCATC	1 cut(s)	361
SmaI	CCCGGG	1 cut(s)	415
SmiMI	CAYNNNNRTG	3 cut(s)	369, 591, 678
Sse9I	AATT	3 cut(s)	69, 300, 697
SsiI	CCGC	3 cut(s)	51, 156, 482
StyD4I	CCNGG	3 cut(s)	199, 412, 413
StyI	CCWWGG	2 cut(s)	140, 342
TaaI	ACNGT	5 cut(s)	60, 267, 451, 715, 799
TaiI	ACGT	3 cut(s)	396, 447, 591
TasI	AATT	3 cut(s)	69, 300, 697
TfiI	GAWTC	3 cut(s)	30, 169, 397
Tru1I	TTAA	2 cut(s)	801, 821
Tru9I	TTAA	2 cut(s)	801, 821
TscAI	CASTG	4 cut(s)	65, 501, 665, 711
TseFI	GTSAC	4 cut(s)	54, 253, 430, 445
Tsp45I	GTSAC	4 cut(s)	54, 253, 430, 445
TspDTI	ATGAA	1 cut(s)	629
TspMI	CCCGGG	1 cut(s)	413
TspRI	CASTG	4 cut(s)	65, 501, 665, 711
XceI	RCATGY	2 cut(s)	683, 786
XmaI	CCCGGG	1 cut(s)	413
XmnI	GAANNNNTTC	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.