Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010552

Physical Location & Seq

Genomic Coordinates Reverse (-)

66196591 .. 66198033

Gene Structure 1443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0480600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGGATTGCATGGTCTTTGGTATGATTCCCATTTTGTGCCCACAGAATTTTGCAAGGAATGATAGGGTGGCTTTCATGGTGCGTCCTAGTAGTACAAGGAGAAGAAGCCTGCCCAAGAACCTTTTCTATCCGCGGCAAGCAAAGCTTCCACCTGATCTCGGAGTCAACCAATTCTTGAACAAGACAAGCAATGATGCCAGTGAGCCAGAGTTCCCTGAAGAAGAAGAAGAAGAAGAAAAGTATACTGAAGATGGCGACATTGTTTGGGAATCGGATGAAATTGAAGCTATTCAGTCACTTTTCCAAGGGAGAATACCCCAAAAGCCGGGGAGTTTGAATAGGCAGAGGCCTCTACCACTCCCACTTCCTTACAAGGTTCGACCTTCGAGACTTCCATCACCCAAGAAAAATGCTGTTAAGATTGGACCAATGTCTAAGCAAGTGTACAAGAACCCCAATGCCCTTGTTGGTTTGGCAAGGGAAATTGGAAGCCTTGCAGCGGATAAAGATGTGGGCATAGTTCTCAACAAGAGGGTTCACTTTCTGCGAAAAGGGTCTCTCTCCATGACAATTCGGGAATTGGGTCACATGGGGCTTCCTGAGAGGGCTCTGCAGACCTTCTGTTGGGCTCAGAAACAGCCTCAGCTCTACCCTGATGACCGGATTTTGAGTTCGACAGTTGAGGTCCTGGCAAGGAACCATGAGCTGAAACTGCCATTTAATTTGGACAAGTTCACTAGTTCCGCGAGTCGTGGTGTGATTGAGGCAATGGTGAGAGGTTTCATTAAAGGAGGAAGCTTGCATCTAGCTTGGAAGCTAGTATCGGTAGCCAAGGATAATCAAAGGAAGCTGGATCCCAGCTTGTACGCCAAGCTAATAGTAGAGTTTGGGAAAAATCCTGATAAACATATGGTTGTAATGACCTTACTGGAGGAGCTTGGAGAAAGAGAAGACTTGAGTTTAAGCCAACAGGACTGTACTGCCATTATGAAAGTATGCATTAGGCTTGGAAAATTTGAAGTGGTCGAGAGTGTTTATGATTGGTTTAGACAATCTGGACACGATCCAACTGTCGTTATTTACACAACTTTGATTCACAGCCGCTACTCTGAGAAGAGATACAGGGAGGCCTTGGCTGTGGTTTGGGAAATGGAGGCTTCAAATTGTCTCTTTGACTTTCCAGCTTATCGAGTTGTAATAAAACTTTTTGTTGCTCTGAATGATCTTGCAAGGGCTGCAAGATATTTTTCGAAACTTAAAGAAGCAGGTTTTACCCCAACATATGACGTATACCGGGATTTGATCCGAATTTACATGGTTTCTGGGCGGCTAGCCAAGTGTAGAGAGATTTGCAAGGAGGTAGAGATGGGAGGACTGAAGTTGGATCAAGAAACAATGTCTCATTTGTTGCAATTAGAAAGAGAGAAAAGGTTTGGTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

480

Amino Acids

54.98

Weight (kDa)

9.04

Isoelectric Point (pI)

47.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010552)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45030 FvH4_5g04570 FvH4_5g05561 FvH4_5g05590 FvH4_5g09840 FvH4_5g09840 FvH4_6g41381 FvH4_6g41383
rosa_chinensis	RchiOBHm_Chr5g0082881
rosa_multiflora	Rmu_co8151450.1_g000001 Rmu_sc0001381.1_g000010 Rmu_sc0023803.1_g000002
rosa_roxburghii	Rroxscaffold_1G00001560
rosa_rugosa	Rorug05G0480600 Rorug05G0480800 Rorug07G0017100
rosa_samantha	Rh1DG078100 Rh5AG531000 Rh5DG566300
rosa_wichuraiana	Rw5G049770 Rw7G012350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1256
AccI	GTMKAC	2 cut(s)	242, 1290
AccII	CGCG	2 cut(s)	133, 746
AciI	CCGC	6 cut(s)	131, 133, 500, 744, 1102, 1327
AclWI	GGATC	5 cut(s)	848, 861, 1058, 1297, 1392
AcsI	RAATTY	3 cut(s)	46, 1013, 1308
AcuI	CTGAAG	3 cut(s)	237, 267, 1397
AfaI	GTAC	4 cut(s)	94, 446, 866, 979
AfiI	CCNNNNNNNGG	4 cut(s)	158, 325, 499, 624
AgsI	TTSAA	5 cut(s)	178, 284, 337, 1019, 1161
AhlI	ACTAGT	1 cut(s)	737
AjnI	CCWGG	1 cut(s)	687
AjuI	GAANNNNNNNTTGG	2 cut(s)	107, 139
AloI	GAACNNNNNNTCC	2 cut(s)	655, 687
Alw26I	GTCTC	4 cut(s)	382, 561, 1172, 1404
AlwI	GGATC	5 cut(s)	848, 861, 1058, 1297, 1392
AoxI	GGCC	2 cut(s)	347, 1128
ApeKI	GCWGC	2 cut(s)	497, 1235
ApoI	RAATTY	3 cut(s)	46, 1013, 1308
Asp700I	GAANNNNTTC	2 cut(s)	122, 288
AspS9I	GGNCC	2 cut(s)	425, 685
AsuC2I	CCSGG	2 cut(s)	327, 1295
AsuHPI	GGTGA	2 cut(s)	390, 784
AsuII	TTCGAA	1 cut(s)	1250
AsuNHI	GCTAGC	1 cut(s)	1330
AvaII	GGWCC	2 cut(s)	425, 685
BaeGI	GKGCMC	1 cut(s)	41
BamHI	GGATCC	1 cut(s)	853
BanII	GRGCYC	2 cut(s)	610, 631
BbsI	GAAGAC	1 cut(s)	957
BbvCI	CCTCAGC	1 cut(s)	642
BbvI	GCAGC	2 cut(s)	509, 1222
BccI	CCATC	3 cut(s)	245, 403, 1360
BciT130I	CCWGG	1 cut(s)	689
BcnI	CCSGG	2 cut(s)	327, 1295
BcoDI	GTCTC	4 cut(s)	382, 561, 1172, 1404
BcuI	ACTAGT	1 cut(s)	737
BfaI	CTAG	5 cut(s)	87, 738, 806, 818, 1331
BfmI	CTRYAG	1 cut(s)	611
BfuAI	ACCTGC	1 cut(s)	1256
BisI	GCNGC	5 cut(s)	134, 498, 1102, 1236, 1328
BlsI	GCNGC	5 cut(s)	135, 499, 1103, 1237, 1329
Bme1390I	CCNGG	3 cut(s)	327, 689, 1295
Bme18I	GGWCC	2 cut(s)	425, 685
BmgT120I	GGNCC	2 cut(s)	425, 685
BmiI	GGNNCC	2 cut(s)	698, 855
BmrFI	CCNGG	3 cut(s)	327, 689, 1295
BmsI	GCATC	2 cut(s)	184, 811
BmtI	GCTAGC	1 cut(s)	1334
BoxI	GACNNNNGTC	1 cut(s)	430
BpiI	GAAGAC	1 cut(s)	957
BpmI	CTGGAG	1 cut(s)	950
Bpu10I	CCTNAGC	1 cut(s)	642
Bpu14I	TTCGAA	1 cut(s)	1250
BpuEI	CTTGAG	1 cut(s)	976
BpuMI	CCSGG	2 cut(s)	327, 1295
BsaI	GGTCTC	1 cut(s)	561
BsaJI	CCNNGG	5 cut(s)	131, 304, 326, 831, 1131
BsaWI	WCCGGW	1 cut(s)	660
Bsc4I	CCNNNNNNNGG	4 cut(s)	158, 325, 499, 624
Bse1I	ACTGG	2 cut(s)	198, 933
Bse3DI	GCAATG	2 cut(s)	196, 774
BseBI	CCWGG	1 cut(s)	689
BseDI	CCNNGG	5 cut(s)	131, 304, 326, 831, 1131
BseGI	GGATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	4 cut(s)	158, 325, 499, 624
BseMI	GCAATG	2 cut(s)	196, 774
BseMII	CTCAG	4 cut(s)	591, 644, 656, 1101
BseNI	ACTGG	2 cut(s)	198, 933
BseRI	GAGGAG	1 cut(s)	947
BseSI	GKGCMC	1 cut(s)	41
BseXI	GCAGC	2 cut(s)	509, 1222
BseYI	CCCAGC	1 cut(s)	857
Bsh1236I	CGCG	2 cut(s)	133, 746
BshFI	GGCC	2 cut(s)	349, 1130
BsiSI	CCGG	3 cut(s)	326, 661, 1294
BslI	CCNNNNNNNGG	4 cut(s)	158, 325, 499, 624
BsmAI	GTCTC	4 cut(s)	382, 561, 1172, 1404
BsnI	GGCC	2 cut(s)	349, 1130
Bso31I	GGTCTC	1 cut(s)	561
Bsp119I	TTCGAA	1 cut(s)	1250
Bsp1286I	GDGCHC	3 cut(s)	41, 610, 631
Bsp1407I	TGTACA	1 cut(s)	444
Bsp143I	GATC	6 cut(s)	154, 853, 1063, 1222, 1302, 1384
BspACI	CCGC	6 cut(s)	131, 133, 500, 744, 1102, 1327
BspANI	GGCC	2 cut(s)	349, 1130
BspCNI	CTCAG	4 cut(s)	592, 643, 655, 1102
BspFNI	CGCG	2 cut(s)	133, 746
BspLI	GGNNCC	2 cut(s)	698, 855
BspMAI	CTGCAG	1 cut(s)	615
BspMI	ACCTGC	1 cut(s)	1256
BspOI	GCTAGC	1 cut(s)	1334
BspPI	GGATC	5 cut(s)	848, 861, 1058, 1297, 1392
BspT104I	TTCGAA	1 cut(s)	1250
BspTNI	GGTCTC	1 cut(s)	561
BsrDI	GCAATG	2 cut(s)	196, 774
BsrGI	TGTACA	1 cut(s)	444
BsrI	ACTGG	2 cut(s)	198, 933
BssECI	CCNNGG	5 cut(s)	131, 304, 326, 831, 1131
BssMI	GATC	6 cut(s)	154, 853, 1063, 1222, 1302, 1384
BssNAI	GTATAC	2 cut(s)	243, 1291
BssT1I	CCWWGG	3 cut(s)	304, 831, 1131
Bst1107I	GTATAC	2 cut(s)	243, 1291
Bst2UI	CCWGG	1 cut(s)	689
Bst4CI	ACNGT	3 cut(s)	679, 977, 1072
Bst6I	CTCTTC	1 cut(s)	1109
BstAPI	GCANNNNNTGC	1 cut(s)	1235
BstAUI	TGTACA	1 cut(s)	444
BstBI	TTCGAA	1 cut(s)	1250
BstC8I	GCNNGC	4 cut(s)	110, 138, 800, 1332
BstDEI	CTNAG	5 cut(s)	435, 600, 630, 642, 1110
BstDSI	CCRYGG	1 cut(s)	131
BstF5I	GGATG	1 cut(s)	280
BstFNI	CGCG	2 cut(s)	133, 746
BstKTI	GATC	6 cut(s)	157, 856, 1066, 1225, 1305, 1387
BstMAI	GTCTC	4 cut(s)	382, 561, 1172, 1404
BstMBI	GATC	6 cut(s)	154, 853, 1063, 1222, 1302, 1384
BstMWI	GCNNNNNNNGC	3 cut(s)	142, 712, 1235
BstNI	CCWGG	1 cut(s)	689
BstPAI	GACNNNNGTC	1 cut(s)	430
BstSCI	CCNGG	3 cut(s)	325, 687, 1293
BstSFI	CTRYAG	1 cut(s)	611
BstSLI	GKGCMC	1 cut(s)	41
BstUI	CGCG	2 cut(s)	133, 746
BstV1I	GCAGC	2 cut(s)	509, 1222
BstV2I	GAAGAC	1 cut(s)	957
BstX2I	RGATCY	1 cut(s)	853
BstYI	RGATCY	1 cut(s)	853
BstZ17I	GTATAC	2 cut(s)	243, 1291
BsuRI	GGCC	2 cut(s)	349, 1130
BtgI	CCRYGG	1 cut(s)	131
BtsCI	GGATG	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	205
BveI	ACCTGC	1 cut(s)	1256
Cac8I	GCNNGC	4 cut(s)	110, 138, 800, 1332
Cfr13I	GGNCC	2 cut(s)	425, 685
Cfr42I	CCGCGG	1 cut(s)	134
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	4 cut(s)	93, 445, 865, 978
CviAII	CATG	6 cut(s)	10, 76, 565, 589, 701, 1315
CviQI	GTAC	4 cut(s)	93, 445, 865, 978
DdeI	CTNAG	5 cut(s)	435, 600, 630, 642, 1110
DpnI	GATC	6 cut(s)	156, 855, 1065, 1224, 1304, 1386
DpnII	GATC	6 cut(s)	154, 853, 1063, 1222, 1302, 1384
Eam1104I	CTCTTC	1 cut(s)	1109
EarI	CTCTTC	1 cut(s)	1109
Eco130I	CCWWGG	3 cut(s)	304, 831, 1131
Eco147I	AGGCCT	2 cut(s)	349, 1130
Eco24I	GRGCYC	2 cut(s)	610, 631
Eco31I	GGTCTC	1 cut(s)	561
Eco47I	GGWCC	2 cut(s)	425, 685
Eco57I	CTGAAG	3 cut(s)	237, 267, 1397
EcoO109I	RGGNCCY	1 cut(s)	685
EcoRII	CCWGG	1 cut(s)	687
EcoT14I	CCWWGG	3 cut(s)	304, 831, 1131
EcoT22I	ATGCAT	1 cut(s)	1001
EcoT38I	GRGCYC	2 cut(s)	610, 631
ErhI	CCWWGG	3 cut(s)	304, 831, 1131
FaeI	CATG	6 cut(s)	13, 79, 568, 592, 704, 1318
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FatI	CATG	6 cut(s)	9, 75, 564, 588, 700, 1314
FauNDI	CATATG	2 cut(s)	909, 1282
FblI	GTMKAC	2 cut(s)	242, 1290
Fnu4HI	GCNGC	5 cut(s)	134, 498, 1102, 1236, 1328
FokI	GGATG	1 cut(s)	287
FriOI	GRGCYC	2 cut(s)	610, 631
Fsp4HI	GCNGC	5 cut(s)	134, 498, 1102, 1236, 1328
FspBI	CTAG	5 cut(s)	87, 738, 806, 818, 1331
GluI	GCNGC	5 cut(s)	134, 498, 1102, 1236, 1328
GsaI	CCCAGC	1 cut(s)	861
GsuI	CTGGAG	1 cut(s)	950
HaeIII	GGCC	2 cut(s)	349, 1130
HapII	CCGG	3 cut(s)	326, 661, 1294
HgaI	GACGC	1 cut(s)	71
Hin1II	CATG	6 cut(s)	13, 79, 568, 592, 704, 1318
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HindIII	AAGCTT	2 cut(s)	143, 796
HinfI	GANTC	5 cut(s)	25, 162, 269, 748, 1093
HpaII	CCGG	3 cut(s)	326, 661, 1294
HphI	GGTGA	2 cut(s)	390, 784
Hpy166II	GTNNAC	6 cut(s)	166, 243, 445, 538, 735, 1291
Hpy188I	TCNGA	6 cut(s)	161, 274, 633, 1111, 1218, 1307
Hpy188III	TCNNGA	8 cut(s)	175, 387, 575, 599, 899, 1027, 1056, 1388
Hpy8I	GTNNAC	6 cut(s)	166, 243, 445, 538, 735, 1291
HpyAV	CCTTC	2 cut(s)	393, 628
HpyCH4III	ACNGT	3 cut(s)	679, 977, 1072
HpyCH4IV	ACGT	1 cut(s)	1287
HpyF10VI	GCNNNNNNNGC	3 cut(s)	142, 712, 1235
HpyF3I	CTNAG	5 cut(s)	435, 600, 630, 642, 1110
HpySE526I	ACGT	1 cut(s)	1287
Hsp92II	CATG	6 cut(s)	13, 79, 568, 592, 704, 1318
KspI	CCGCGG	1 cut(s)	134
Kzo9I	GATC	6 cut(s)	154, 853, 1063, 1222, 1302, 1384
LmnI	GCTCC	1 cut(s)	934
Lsp1109I	GCAGC	2 cut(s)	509, 1222
LweI	GCATC	2 cut(s)	184, 811
MaeI	CTAG	5 cut(s)	87, 738, 806, 818, 1331
MaeII	ACGT	1 cut(s)	1287
MaeIII	GTNAC	2 cut(s)	294, 584
MalI	GATC	6 cut(s)	156, 855, 1065, 1224, 1304, 1386
MboI	GATC	6 cut(s)	154, 853, 1063, 1222, 1302, 1384
MflI	RGATCY	1 cut(s)	853
MhlI	GDGCHC	3 cut(s)	41, 610, 631
MlyI	GAGTC	2 cut(s)	171, 757
MmeI	TCCRAC	2 cut(s)	1091, 1362
Mph1103I	ATGCAT	1 cut(s)	1001
MroXI	GAANNNNTTC	2 cut(s)	122, 288
MseI	TTAA	6 cut(s)	417, 720, 786, 962, 1257, 1441
MspA1I	CMGCKG	2 cut(s)	133, 500
MspI	CCGG	3 cut(s)	326, 661, 1294
MspR9I	CCNGG	3 cut(s)	327, 689, 1295
MvaI	CCWGG	1 cut(s)	689
MvnI	CGCG	2 cut(s)	133, 746
MwoI	GCNNNNNNNGC	3 cut(s)	142, 712, 1235
NciI	CCSGG	2 cut(s)	327, 1295
NdeI	CATATG	2 cut(s)	909, 1282
NdeII	GATC	6 cut(s)	154, 853, 1063, 1222, 1302, 1384
NheI	GCTAGC	1 cut(s)	1330
NlaIII	CATG	6 cut(s)	13, 79, 568, 592, 704, 1318
NlaIV	GGNNCC	2 cut(s)	698, 855
NmuCI	GTSAC	2 cut(s)	294, 584
NsiI	ATGCAT	1 cut(s)	1001
NspV	TTCGAA	1 cut(s)	1250
PceI	AGGCCT	2 cut(s)	349, 1130
PdmI	GAANNNNTTC	2 cut(s)	122, 288
PfeI	GAWTC	3 cut(s)	25, 269, 1093
PkrI	GCNGC	5 cut(s)	135, 499, 1103, 1237, 1329
PleI	GAGTC	2 cut(s)	170, 756
PpsI	GAGTC	2 cut(s)	170, 756
PpuMI	RGGWCCY	1 cut(s)	685
PshAI	GACNNNNGTC	1 cut(s)	430
Psp5II	RGGWCCY	1 cut(s)	685
Psp6I	CCWGG	1 cut(s)	687
PspFI	CCCAGC	1 cut(s)	857
PspGI	CCWGG	1 cut(s)	687
PspN4I	GGNNCC	2 cut(s)	698, 855
PspPI	GGNCC	2 cut(s)	425, 685
PspPPI	RGGWCCY	1 cut(s)	685
PstI	CTGCAG	1 cut(s)	615
PsuI	RGATCY	1 cut(s)	853
RsaI	GTAC	4 cut(s)	94, 446, 866, 979
RsaNI	GTAC	4 cut(s)	93, 445, 865, 978
SacII	CCGCGG	1 cut(s)	134
SaqAI	TTAA	6 cut(s)	417, 720, 786, 962, 1257, 1441
SatI	GCNGC	5 cut(s)	134, 498, 1102, 1236, 1328
Sau3AI	GATC	6 cut(s)	154, 853, 1063, 1222, 1302, 1384
Sau96I	GGNCC	2 cut(s)	425, 685
SchI	GAGTC	2 cut(s)	171, 757
ScrFI	CCNGG	3 cut(s)	327, 689, 1295
SduI	GDGCHC	3 cut(s)	41, 610, 631
SfaNI	GCATC	2 cut(s)	184, 811
SfcI	CTRYAG	1 cut(s)	611
Sfr303I	CCGCGG	1 cut(s)	134
SfuI	TTCGAA	1 cut(s)	1250
SgrBI	CCGCGG	1 cut(s)	134
SinI	GGWCC	2 cut(s)	425, 685
SmlI	CTYRAG	1 cut(s)	955
SmoI	CTYRAG	1 cut(s)	955
SpeI	ACTAGT	1 cut(s)	737
SseBI	AGGCCT	2 cut(s)	349, 1130
SsiI	CCGC	6 cut(s)	131, 133, 500, 744, 1102, 1327
SspMI	CTAG	5 cut(s)	87, 738, 806, 818, 1331
StuI	AGGCCT	2 cut(s)	349, 1130
StyD4I	CCNGG	3 cut(s)	325, 687, 1293
StyI	CCWWGG	3 cut(s)	304, 831, 1131
TaaI	ACNGT	3 cut(s)	679, 977, 1072
TaiI	ACGT	1 cut(s)	1290
TaqI	TCGA	6 cut(s)	379, 386, 674, 1026, 1189, 1250
TatI	WGTACW	3 cut(s)	92, 444, 977
TauI	GCSGC	3 cut(s)	136, 1104, 1330
TfiI	GAWTC	3 cut(s)	25, 269, 1093
Tru1I	TTAA	6 cut(s)	417, 720, 786, 962, 1257, 1441
Tru9I	TTAA	6 cut(s)	417, 720, 786, 962, 1257, 1441
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	2 cut(s)	294, 584
TseI	GCWGC	2 cut(s)	497, 1235
Tsp45I	GTSAC	2 cut(s)	294, 584
TspDTI	ATGAA	4 cut(s)	64, 291, 772, 1004
TspRI	CASTG	1 cut(s)	205
VpaK11BI	GGWCC	2 cut(s)	425, 685
XapI	RAATTY	3 cut(s)	46, 1013, 1308
XmiI	GTMKAC	2 cut(s)	242, 1290
XmnI	GAANNNNTTC	2 cut(s)	122, 288
XspI	CTAG	5 cut(s)	87, 738, 806, 818, 1331
Zsp2I	ATGCAT	1 cut(s)	1001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.