Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8151450.1

Orthogroup ID

OG0010552

Physical Location & Seq

Genomic Coordinates Forward (+)

22 .. 546

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8151450.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atgtatgttatcgatgtgtgtcaaggggaaacagtagaaaccctccccagcttgacgacttcagacggaaaggattggcttccgatcaaattaggcctcttcagtacattaaccgggaggcgtcgttggatttatgcggatccagatgcagattctatttatgaagaaccaaaccttataacccaaagacgaatgttagtccctctcgatgatgtgaaactattatctcgaagggatgcgtatacagtggtgatggttaggtatctttccaacatgggtgtccctcaacaagagcagcctgctattattgaagaaatatttaaggctgttcacgtggcagtccccaagctgcctgttgtggttgcttttggggacgtgacctttgtggacagcggcggactttttcctgcaactaaatcagcaattcaggatttggagaaagtgagacttaatagtttggatgaagctactattacagggacgccttcatgtgttatttgcttgaagggccttgatcaccaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0051603 GO:0060560 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

174

Amino Acids

19.31

Weight (kDa)

4.9

Isoelectric Point (pI)

53.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010552)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45030 FvH4_5g04570 FvH4_5g05561 FvH4_5g05590 FvH4_5g09840 FvH4_5g09840 FvH4_6g41381 FvH4_6g41383
rosa_chinensis	RchiOBHm_Chr5g0082881
rosa_multiflora	Rmu_co8151450.1_g000001 Rmu_sc0001381.1_g000010 Rmu_sc0023803.1_g000002
rosa_roxburghii	Rroxscaffold_1G00001560
rosa_rugosa	Rorug05G0480600 Rorug05G0480800 Rorug07G0017100
rosa_samantha	Rh1DG078100 Rh5AG531000 Rh5DG566300
rosa_wichuraiana	Rw5G049770 Rw7G012350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	179
AccI	GTMKAC	1 cut(s)	242
AciI	CCGC	3 cut(s)	137, 393, 396
AclWI	GGATC	2 cut(s)	134, 147
AcuI	CTGAAG	2 cut(s)	45, 85
AcvI	CACGTG	1 cut(s)	334
AcyI	GRCGYC	2 cut(s)	121, 482
AfaI	GTAC	1 cut(s)	106
AgsI	TTSAA	2 cut(s)	311, 505
AjiI	CACGTC	1 cut(s)	376
AluBI	AGCT	3 cut(s)	51, 349, 467
AluI	AGCT	3 cut(s)	51, 349, 467
Alw26I	GTCTC	1 cut(s)	439
AlwI	GGATC	2 cut(s)	134, 147
AoxI	GGCC	2 cut(s)	94, 508
ApeKI	GCWGC	2 cut(s)	295, 349
ArsI	GACNNNNNNTTYG	2 cut(s)	365, 397
AspS9I	GGNCC	1 cut(s)	508
AsuC2I	CCSGG	1 cut(s)	115
AsuHPI	GGTGA	2 cut(s)	262, 509
BamHI	GGATCC	1 cut(s)	139
BbrPI	CACGTG	1 cut(s)	334
BbvI	GCAGC	2 cut(s)	307, 336
BccI	CCATC	1 cut(s)	247
BclI	TGATCA	1 cut(s)	514
BcnI	CCSGG	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	439
BisI	GCNGC	3 cut(s)	296, 350, 394
BlsI	GCNGC	3 cut(s)	297, 351, 395
Bme1390I	CCNGG	1 cut(s)	115
BmgBI	CACGTC	1 cut(s)	376
BmgT120I	GGNCC	1 cut(s)	508
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	1 cut(s)	115
BmsI	GCATC	2 cut(s)	136, 226
BpuMI	CCSGG	1 cut(s)	115
Bsa29I	ATCGAT	1 cut(s)	12
BsaAI	YACGTR	1 cut(s)	334
BsaHI	GRCGYC	2 cut(s)	121, 482
BsaXI	ACNNNNNCTCC	2 cut(s)	109, 139
BseCI	ATCGAT	1 cut(s)	12
BseGI	GGATG	2 cut(s)	241, 466
BseXI	GCAGC	2 cut(s)	307, 336
BseYI	CCCAGC	1 cut(s)	47
BshFI	GGCC	2 cut(s)	96, 510
BshVI	ATCGAT	1 cut(s)	12
BsiSI	CCGG	1 cut(s)	114
BslFI	GGGAC	5 cut(s)	185, 266, 326, 386, 493
BsmAI	GTCTC	1 cut(s)	439
BsmFI	GGGAC	5 cut(s)	185, 266, 326, 386, 493
BsnI	GGCC	2 cut(s)	96, 510
Bsp143I	GATC	3 cut(s)	84, 139, 514
BspACI	CCGC	3 cut(s)	137, 393, 396
BspANI	GGCC	2 cut(s)	96, 510
BspDI	ATCGAT	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	141
BspPI	GGATC	2 cut(s)	134, 147
BssMI	GATC	3 cut(s)	84, 139, 514
BssNAI	GTATAC	1 cut(s)	243
BssNI	GRCGYC	2 cut(s)	121, 482
Bst1107I	GTATAC	1 cut(s)	243
Bst4CI	ACNGT	2 cut(s)	34, 247
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	2 cut(s)	121, 482
BstBAI	YACGTR	1 cut(s)	334
BstC8I	GCNNGC	1 cut(s)	300
BstF5I	GGATG	2 cut(s)	241, 466
BstKTI	GATC	3 cut(s)	87, 142, 517
BstMAI	GTCTC	1 cut(s)	439
BstMBI	GATC	3 cut(s)	84, 139, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	507
BstSCI	CCNGG	1 cut(s)	113
BstV1I	GCAGC	2 cut(s)	307, 336
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BstZ17I	GTATAC	1 cut(s)	243
Bsu15I	ATCGAT	1 cut(s)	12
BsuRI	GGCC	2 cut(s)	96, 510
BsuTUI	ATCGAT	1 cut(s)	12
BtrI	CACGTC	1 cut(s)	376
BtsCI	GGATG	2 cut(s)	241, 466
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	508
ClaI	ATCGAT	1 cut(s)	12
CseI	GACGC	2 cut(s)	110, 490
Csp6I	GTAC	1 cut(s)	105
CviAII	CATG	2 cut(s)	274, 489
CviJI	RGCY	8 cut(s)	51, 79, 96, 298, 326, 349, 467, 510
CviKI_1	RGCY	8 cut(s)	51, 79, 96, 298, 326, 349, 467, 510
CviQI	GTAC	1 cut(s)	105
DpnI	GATC	3 cut(s)	86, 141, 516
DpnII	GATC	3 cut(s)	84, 139, 514
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
EciI	GGCGGA	1 cut(s)	411
Eco147I	AGGCCT	1 cut(s)	96
Eco57I	CTGAAG	2 cut(s)	45, 85
Eco72I	CACGTG	1 cut(s)	334
EcoO109I	RGGNCCY	1 cut(s)	508
FaeI	CATG	2 cut(s)	277, 492
FaiI	YATR	7 cut(s)	6, 135, 162, 179, 243, 275, 490
FalI	AAGNNNNNCTT	2 cut(s)	432, 464
FaqI	GGGAC	5 cut(s)	185, 266, 326, 386, 493
FatI	CATG	2 cut(s)	273, 488
FbaI	TGATCA	1 cut(s)	514
FblI	GTMKAC	1 cut(s)	242
Fnu4HI	GCNGC	3 cut(s)	296, 350, 394
FokI	GGATG	2 cut(s)	248, 473
Fsp4HI	GCNGC	3 cut(s)	296, 350, 394
GluI	GCNGC	3 cut(s)	296, 350, 394
GsaI	CCCAGC	1 cut(s)	51
HaeIII	GGCC	2 cut(s)	96, 510
HapII	CCGG	1 cut(s)	114
HgaI	GACGC	2 cut(s)	110, 490
Hin1I	GRCGYC	2 cut(s)	121, 482
Hin1II	CATG	2 cut(s)	277, 492
HinfI	GANTC	1 cut(s)	152
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	2 cut(s)	262, 509
Hpy166II	GTNNAC	3 cut(s)	243, 331, 388
Hpy188I	TCNGA	2 cut(s)	64, 84
Hpy188III	TCNNGA	4 cut(s)	143, 206, 228, 428
Hpy8I	GTNNAC	3 cut(s)	243, 331, 388
Hpy99I	CGWCG	1 cut(s)	126
HpyAV	CCTTC	3 cut(s)	225, 495, 499
HpyCH4III	ACNGT	2 cut(s)	34, 247
HpyCH4IV	ACGT	2 cut(s)	333, 375
HpyCH4V	TGCA	2 cut(s)	149, 410
HpyF10VI	GCNNNNNNNGC	1 cut(s)	507
HpySE526I	ACGT	2 cut(s)	333, 375
Hsp92I	GRCGYC	2 cut(s)	121, 482
Hsp92II	CATG	2 cut(s)	277, 492
Ksp22I	TGATCA	1 cut(s)	514
Kzo9I	GATC	3 cut(s)	84, 139, 514
LpnPI	CCDG	8 cut(s)	61, 127, 156, 312, 366, 413, 420, 462
Lsp1109I	GCAGC	2 cut(s)	307, 336
LweI	GCATC	2 cut(s)	136, 226
MaeII	ACGT	2 cut(s)	333, 375
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	3 cut(s)	86, 141, 516
MboI	GATC	3 cut(s)	84, 139, 514
MboII	GAAGA	3 cut(s)	91, 176, 323
MflI	RGATCY	1 cut(s)	139
MluCI	AATT	2 cut(s)	89, 423
MmeI	TCCRAC	2 cut(s)	107, 294
MnlI	CCTC	5 cut(s)	53, 107, 111, 213, 294
MseI	TTAA	3 cut(s)	110, 321, 450
MspA1I	CMGCKG	1 cut(s)	393
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	1 cut(s)	115
MwoI	GCNNNNNNNGC	1 cut(s)	507
NciI	CCSGG	1 cut(s)	115
NdeII	GATC	3 cut(s)	84, 139, 514
NlaIII	CATG	2 cut(s)	277, 492
NlaIV	GGNNCC	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	376
PceI	AGGCCT	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	152
PkrI	GCNGC	3 cut(s)	297, 351, 395
PmaCI	CACGTG	1 cut(s)	334
PmlI	CACGTG	1 cut(s)	334
Ppu21I	YACGTR	1 cut(s)	334
PsiI	TTATAA	1 cut(s)	179
PspCI	CACGTG	1 cut(s)	334
PspFI	CCCAGC	1 cut(s)	47
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	1 cut(s)	508
PsuI	RGATCY	1 cut(s)	139
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
SaqAI	TTAA	3 cut(s)	110, 321, 450
SatI	GCNGC	3 cut(s)	296, 350, 394
Sau3AI	GATC	3 cut(s)	84, 139, 514
Sau96I	GGNCC	1 cut(s)	508
ScrFI	CCNGG	1 cut(s)	115
SetI	ASST	8 cut(s)	53, 177, 263, 336, 351, 378, 383, 469
SfaNI	GCATC	2 cut(s)	136, 226
Sse9I	AATT	2 cut(s)	89, 423
SseBI	AGGCCT	1 cut(s)	96
SsiI	CCGC	3 cut(s)	137, 393, 396
SspI	AATATT	1 cut(s)	318
StuI	AGGCCT	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	113
TaaI	ACNGT	2 cut(s)	34, 247
TaiI	ACGT	2 cut(s)	336, 378
TaqI	TCGA	3 cut(s)	12, 207, 229
TasI	AATT	2 cut(s)	89, 423
TatI	WGTACW	1 cut(s)	104
TauI	GCSGC	1 cut(s)	396
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	3 cut(s)	110, 321, 450
Tru9I	TTAA	3 cut(s)	110, 321, 450
TscAI	CASTG	1 cut(s)	252
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	2 cut(s)	295, 349
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	3 cut(s)	177, 477, 477
TspGWI	ACGGA	1 cut(s)	81
TspRI	CASTG	1 cut(s)	252
XmiI	GTMKAC	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.