Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003822

Physical Location & Seq

Genomic Coordinates Reverse (-)

5582351 .. 5585311

Gene Structure 2961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g06240.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGACCCCACCGGCCTGAATCCTTGTAAGATTACTCTCAAGCTCGGAAGAGACCGAGAGCAGGAAAAGCCGCCGGCGAAAACGAATGAGAACATAGCCGGCGTATCTCCTTCGTCTTCCTCCGTCTCGTCGCCGCCGTCTTCTCCTTCCTCCTCCGACGAGATTCTCCAGTCTCATCTTAAGTCGCAGGAGCTCGTGGTTTACGACCCCGCCGTCGCCGCCGCCGGTGGTAATGTGAATCGTGTCCGGAATCTGAATCCGAATCCGATAAATTCCATTTCTCCGGTTGGTCAAGGTCCTAGGGTTTTGCCGTCGGTCGGGGCCTTCACTGTGCAGTGCGCTAATTGCTTCAAGTGGAGGCTGATTCCGACGAAGGAGCAGTACGAGCAAATCCGGGAGCACATTCTGGAGGAGCCGTTTTTCTGTGAGACTGCCAAGGAGTGGAGGCCGTCGATTTCGTGTGATGATCCAGCTGACATTAATCAAGACGGGAGCCGGCTCTGGGCCATTGATAGGCCCAACATTGCTCAGCCGCCGCCTGGATGGCAACGGCTGCTGAGGATTCGAGGTGAAGGAAGCACCAAGTTTGCTGACGTTTACTATCAAGCGCCGTCGGGCAAGAGACTTCGGTCCATGGTGGAGATTCAAAAGTATTTGATTGAACATCCGGAGTATATGGTGGATGGGCTATCTATGGCACAATTTTCATTTCAGATTCCAAGGCCGCTGCAGGAGAATTATGTGAGGAAACGCCCTGCTGCTCCTCGTTTGACAGCTGCTGACCATGCCAGTAGAACTCTTGAACCGACTGAAGCTAATCCGATAGCATGGGCTGGTCCAGATGATACAGAGTTGCAACTTGGTTCTCCATACTTGGAGGCTCATGTGTTTGACCCTGTTGGTCGACCTACAAAGAAGCGAGCCAAAACAAGAACTCCATCAAGGGTCTACAATAGTAATTTAAATATCAGCACAGAGTCGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008327 GO:0019899 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD zf-CW

Protein Analysis

329

Amino Acids

36.42

Weight (kDa)

8.21

Isoelectric Point (pI)

61.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CW	PF07496	110 - 159	1.5e-11	CW-type Zinc Finger
MBD	PF01429	179 - 239	1.9e-13	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35330 AT5G35330 AT5G35330 AT5G35330
fragaria_vesca	FvH4_4g06240 FvH4_4g06240 FvH4_4g06240 FvH4_4g06240 FvH4_4g06240
malus_domestica	MD13G1234700.v1.1 MD16G1239500.v1.1
prunus_persica	Prupe.1G065600_v2.0.a1 Prupe.1G065600_v2.0.a1
pyrus_communis	pycom16g20040
rosa_chinensis	RchiOBHm_Chr4g0397961
rosa_laevigata	RLG00000009392
rosa_multiflora	Rmu_co8227835.1_g000001 Rmu_co8419633.1_g000001 Rmu_sc0001074.1_g000002 Rmu_sc0001074.1_g000005 Rmu_sc0003773.1_g000027
rosa_roxburghii	Rroxscaffold_5G00342870 Rroxscaffold_5G00342930
rosa_rugosa	Rorug04G0004900 Rorug04G0005000
rosa_samantha	Rh4AG081200 Rh4AG081600 Rh4BG079200 Rh4CG088800 Rh4CG089100 Rh4DG074700
rosa_wichuraiana	Rw0G019360 Rw4G006770 Rw4G006790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	212
AccB7I	CCANNNNNTGG	1 cut(s)	441
AccI	GTMKAC	2 cut(s)	904, 948
AccIII	TCCGGA	2 cut(s)	246, 667
AciI	CCGC	8 cut(s)	71, 134, 210, 219, 222, 533, 536, 725
AclWI	GGATC	1 cut(s)	461
AcsI	RAATTY	1 cut(s)	271
AcuI	CTGAAG	1 cut(s)	831
AfaI	GTAC	1 cut(s)	383
AfiI	CCNNNNNNNGG	6 cut(s)	61, 317, 441, 502, 513, 539
AflII	CTTAAG	1 cut(s)	179
AgsI	TTSAA	4 cut(s)	352, 647, 662, 803
AjnI	CCWGG	1 cut(s)	538
AluBI	AGCT	6 cut(s)	43, 193, 473, 776, 815, 984
AluI	AGCT	6 cut(s)	43, 193, 473, 776, 815, 984
Alw21I	GWGCWC	2 cut(s)	195, 402
Alw26I	GTCTC	5 cut(s)	45, 130, 177, 422, 616
AlwI	GGATC	1 cut(s)	461
AlwNI	CAGNNNCTG	1 cut(s)	779
Aor13HI	TCCGGA	2 cut(s)	246, 667
AoxI	GGCC	6 cut(s)	13, 321, 446, 504, 515, 722
ApeKI	GCWGC	4 cut(s)	553, 727, 758, 776
ApoI	RAATTY	1 cut(s)	271
AseI	ATTAAT	1 cut(s)	480
AspA2I	CCTAGG	1 cut(s)	299
AspLEI	GCGC	2 cut(s)	341, 610
AspS9I	GGNCC	7 cut(s)	4, 296, 321, 504, 516, 630, 836
AsuC2I	CCSGG	1 cut(s)	395
AsuHPI	GGTGA	1 cut(s)	581
AvaII	GGWCC	4 cut(s)	4, 296, 630, 836
AvrII	CCTAGG	1 cut(s)	299
BanII	GRGCYC	1 cut(s)	195
BarI	GAAGNNNNNNTAC	2 cut(s)	365, 397
BauI	CACGAG	1 cut(s)	194
BbsI	GAAGAC	2 cut(s)	108, 132
Bbv12I	GWGCWC	2 cut(s)	195, 402
BbvCI	CCTCAGC	1 cut(s)	557
BbvI	GCAGC	4 cut(s)	540, 714, 745, 763
BccI	CCATC	3 cut(s)	537, 677, 946
BceAI	ACGGC	7 cut(s)	121, 197, 295, 400, 433, 566, 595
BciT130I	CCWGG	1 cut(s)	540
BcnI	CCSGG	1 cut(s)	395
BcoDI	GTCTC	5 cut(s)	45, 130, 177, 422, 616
BfaI	CTAG	2 cut(s)	300, 985
BfmI	CTRYAG	1 cut(s)	728
BfoI	RGCGCY	1 cut(s)	611
BfrI	CTTAAG	1 cut(s)	179
BglI	GCCNNNNNGGC	1 cut(s)	544
BlnI	CCTAGG	1 cut(s)	299
BlpI	GCTNAGC	1 cut(s)	528
Bme1390I	CCNGG	2 cut(s)	395, 540
Bme18I	GGWCC	4 cut(s)	4, 296, 630, 836
BmgT120I	GGNCC	7 cut(s)	4, 296, 321, 504, 516, 630, 836
BmiI	GGNNCC	4 cut(s)	6, 322, 414, 494
BmrFI	CCNGG	2 cut(s)	395, 540
BoxI	GACNNNNGTC	1 cut(s)	628
BpiI	GAAGAC	2 cut(s)	108, 132
BpmI	CTGGAG	2 cut(s)	152, 428
Bpu10I	CCTNAGC	1 cut(s)	557
Bpu1102I	GCTNAGC	1 cut(s)	528
BpuEI	CTTGAG	1 cut(s)	23
BpuMI	CCSGG	1 cut(s)	395
BsaI	GGTCTC	1 cut(s)	45
BsaJI	CCNNGG	4 cut(s)	299, 435, 633, 719
BsaWI	WCCGGW	3 cut(s)	246, 283, 667
BsaXI	ACNNNNNCTCC	4 cut(s)	401, 431, 919, 949
Bsc4I	CCNNNNNNNGG	6 cut(s)	61, 317, 441, 502, 513, 539
Bse118I	RCCGGY	5 cut(s)	11, 73, 98, 224, 495
Bse1I	ACTGG	2 cut(s)	169, 789
Bse3DI	GCAATG	1 cut(s)	522
BseAI	TCCGGA	2 cut(s)	246, 667
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	4 cut(s)	299, 435, 633, 719
BseGI	GGATG	3 cut(s)	548, 664, 688
BseLI	CCNNNNNNNGG	6 cut(s)	61, 317, 441, 502, 513, 539
BseMI	GCAATG	1 cut(s)	522
BseMII	CTCAG	2 cut(s)	542, 548
BseNI	ACTGG	2 cut(s)	169, 789
BseRI	GAGGAG	3 cut(s)	142, 425, 753
BseXI	GCAGC	4 cut(s)	540, 714, 745, 763
BsgI	GTGCAG	1 cut(s)	353
Bsh1285I	CGRYCG	1 cut(s)	318
BshFI	GGCC	6 cut(s)	15, 323, 448, 506, 517, 724
BsiEI	CGRYCG	1 cut(s)	318
BsiHKAI	GWGCWC	2 cut(s)	195, 402
BsiSI	CCGG	9 cut(s)	12, 74, 99, 225, 247, 284, 394, 496, 668
BslI	CCNNNNNNNGG	6 cut(s)	61, 317, 441, 502, 513, 539
BsmAI	GTCTC	5 cut(s)	45, 130, 177, 422, 616
BsmBI	CGTCTC	1 cut(s)	130
BsnI	GGCC	6 cut(s)	15, 323, 448, 506, 517, 724
Bso31I	GGTCTC	1 cut(s)	45
Bsp1286I	GDGCHC	2 cut(s)	195, 402
Bsp13I	TCCGGA	2 cut(s)	246, 667
Bsp143I	GATC	1 cut(s)	466
Bsp1720I	GCTNAGC	1 cut(s)	528
Bsp19I	CCATGG	1 cut(s)	633
BspACI	CCGC	8 cut(s)	71, 134, 210, 219, 222, 533, 536, 725
BspANI	GGCC	6 cut(s)	15, 323, 448, 506, 517, 724
BspCNI	CTCAG	2 cut(s)	541, 549
BspEI	TCCGGA	2 cut(s)	246, 667
BspLI	GGNNCC	4 cut(s)	6, 322, 414, 494
BspMAI	CTGCAG	1 cut(s)	732
BspPI	GGATC	1 cut(s)	461
BspTI	CTTAAG	1 cut(s)	179
BspTNI	GGTCTC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	522
BsrFI	RCCGGY	5 cut(s)	11, 73, 98, 224, 495
BsrI	ACTGG	2 cut(s)	169, 789
BssAI	RCCGGY	5 cut(s)	11, 73, 98, 224, 495
BssECI	CCNNGG	4 cut(s)	299, 435, 633, 719
BssMI	GATC	1 cut(s)	466
BssSI	CACGAG	1 cut(s)	194
BssT1I	CCWWGG	4 cut(s)	299, 435, 633, 719
Bst2BI	CACGAG	1 cut(s)	194
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	1 cut(s)	331
Bst6I	CTCTTC	1 cut(s)	43
BstAFI	CTTAAG	1 cut(s)	179
BstAPI	GCANNNNNTGC	1 cut(s)	553
BstC8I	GCNNGC	4 cut(s)	75, 100, 497, 921
BstDEI	CTNAG	2 cut(s)	528, 557
BstDSI	CCRYGG	1 cut(s)	633
BstF5I	GGATG	3 cut(s)	548, 664, 688
BstH2I	RGCGCY	1 cut(s)	611
BstHHI	GCGC	2 cut(s)	341, 610
BstKTI	GATC	1 cut(s)	469
BstMAI	GTCTC	5 cut(s)	45, 130, 177, 422, 616
BstMBI	GATC	1 cut(s)	466
BstMCI	CGRYCG	1 cut(s)	318
BstMWI	GCNNNNNNNGC	7 cut(s)	67, 218, 345, 385, 544, 553, 785
BstNI	CCWGG	1 cut(s)	540
BstPAI	GACNNNNGTC	1 cut(s)	628
BstSCI	CCNGG	2 cut(s)	393, 538
BstSFI	CTRYAG	1 cut(s)	728
BstV1I	GCAGC	4 cut(s)	540, 714, 745, 763
BstV2I	GAAGAC	2 cut(s)	108, 132
BsuRI	GGCC	6 cut(s)	15, 323, 448, 506, 517, 724
BtgI	CCRYGG	1 cut(s)	633
BtsCI	GGATG	3 cut(s)	548, 664, 688
BtsI	GCAGTG	1 cut(s)	341
BtsIMutI	CAGTG	2 cut(s)	327, 341
Cac8I	GCNNGC	4 cut(s)	75, 100, 497, 921
CaiI	CAGNNNCTG	1 cut(s)	779
CfoI	GCGC	2 cut(s)	341, 610
Cfr10I	RCCGGY	5 cut(s)	11, 73, 98, 224, 495
Cfr13I	GGNCC	7 cut(s)	4, 296, 321, 504, 516, 630, 836
Csp6I	GTAC	1 cut(s)	382
CviAII	CATG	4 cut(s)	634, 785, 828, 884
CviQI	GTAC	1 cut(s)	382
DdeI	CTNAG	2 cut(s)	528, 557
DpnI	GATC	1 cut(s)	468
DpnII	GATC	1 cut(s)	466
DraI	TTTAAA	1 cut(s)	963
DrdI	GACNNNNNNGTC	1 cut(s)	212
DseDI	GACNNNNNNGTC	1 cut(s)	212
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	4 cut(s)	299, 435, 633, 719
Eco24I	GRGCYC	1 cut(s)	195
Eco31I	GGTCTC	1 cut(s)	45
Eco47I	GGWCC	4 cut(s)	4, 296, 630, 836
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	831
EcoICRI	GAGCTC	1 cut(s)	193
EcoO109I	RGGNCCY	2 cut(s)	296, 321
EcoRII	CCWGG	1 cut(s)	538
EcoT14I	CCWWGG	4 cut(s)	299, 435, 633, 719
EcoT38I	GRGCYC	1 cut(s)	195
ErhI	CCWWGG	4 cut(s)	299, 435, 633, 719
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	4 cut(s)	637, 788, 831, 887
FatI	CATG	4 cut(s)	633, 784, 827, 883
FauI	CCCGC	1 cut(s)	217
FblI	GTMKAC	2 cut(s)	904, 948
FokI	GGATG	3 cut(s)	555, 651, 695
FriOI	GRGCYC	1 cut(s)	195
FspBI	CTAG	2 cut(s)	300, 985
GlaI	GCGC	2 cut(s)	340, 609
GsuI	CTGGAG	2 cut(s)	152, 428
HaeII	RGCGCY	1 cut(s)	611
HaeIII	GGCC	6 cut(s)	15, 323, 448, 506, 517, 724
HapII	CCGG	9 cut(s)	12, 74, 99, 225, 247, 284, 394, 496, 668
HhaI	GCGC	2 cut(s)	341, 610
Hin1II	CATG	4 cut(s)	637, 788, 831, 887
Hin6I	GCGC	2 cut(s)	339, 608
HinP1I	GCGC	2 cut(s)	339, 608
HincII	GTYRAC	1 cut(s)	905
HindII	GTYRAC	1 cut(s)	905
HpaII	CCGG	9 cut(s)	12, 74, 99, 225, 247, 284, 394, 496, 668
HphI	GGTGA	1 cut(s)	581
Hpy166II	GTNNAC	4 cut(s)	202, 598, 905, 949
Hpy188I	TCNGA	8 cut(s)	47, 157, 255, 261, 267, 369, 714, 822
Hpy188III	TCNNGA	6 cut(s)	247, 407, 485, 668, 800, 839
Hpy8I	GTNNAC	4 cut(s)	202, 598, 905, 949
Hpy99I	CGWCG	7 cut(s)	133, 161, 218, 316, 373, 454, 616
HpyAV	CCTTC	5 cut(s)	120, 156, 334, 367, 566
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4IV	ACGT	1 cut(s)	594
HpyCH4V	TGCA	3 cut(s)	334, 730, 856
HpyF10VI	GCNNNNNNNGC	7 cut(s)	67, 218, 345, 385, 544, 553, 785
HpyF3I	CTNAG	2 cut(s)	528, 557
HpySE526I	ACGT	1 cut(s)	594
Hsp92II	CATG	4 cut(s)	637, 788, 831, 887
HspAI	GCGC	2 cut(s)	339, 608
Kpn2I	TCCGGA	2 cut(s)	246, 667
KroI	GCCGGC	3 cut(s)	73, 98, 495
KroNI	GCCGGC	3 cut(s)	75, 100, 497
Kzo9I	GATC	1 cut(s)	466
LmnI	GCTCC	6 cut(s)	190, 376, 397, 412, 492, 766
Lsp1109I	GCAGC	4 cut(s)	540, 714, 745, 763
MaeI	CTAG	2 cut(s)	300, 985
MaeII	ACGT	1 cut(s)	594
MalI	GATC	1 cut(s)	468
MboI	GATC	1 cut(s)	466
MboII	GAAGA	3 cut(s)	60, 108, 132
MhlI	GDGCHC	2 cut(s)	195, 402
MluCI	AATT	5 cut(s)	271, 343, 701, 736, 958
MlyI	GAGTC	1 cut(s)	986
MmeI	TCCRAC	2 cut(s)	180, 392
MreI	CGCCGGCG	1 cut(s)	73
MroI	TCCGGA	2 cut(s)	246, 667
MroNI	GCCGGC	3 cut(s)	73, 98, 495
MseI	TTAA	3 cut(s)	180, 480, 962
MspA1I	CMGCKG	3 cut(s)	473, 727, 776
MspCI	CTTAAG	1 cut(s)	179
MspI	CCGG	9 cut(s)	12, 74, 99, 225, 247, 284, 394, 496, 668
MspR9I	CCNGG	2 cut(s)	395, 540
MvaI	CCWGG	1 cut(s)	540
MwoI	GCNNNNNNNGC	7 cut(s)	67, 218, 345, 385, 544, 553, 785
NaeI	GCCGGC	3 cut(s)	75, 100, 497
NciI	CCSGG	1 cut(s)	395
NcoI	CCATGG	1 cut(s)	633
NdeII	GATC	1 cut(s)	466
NgoMIV	GCCGGC	3 cut(s)	73, 98, 495
NlaIII	CATG	4 cut(s)	637, 788, 831, 887
NlaIV	GGNNCC	4 cut(s)	6, 322, 414, 494
PcsI	WCGNNNNNNNCGW	3 cut(s)	134, 201, 210
PdiI	GCCGGC	3 cut(s)	75, 100, 497
PflMI	CCANNNNNTGG	1 cut(s)	441
PfoI	TCCNGGA	1 cut(s)	393
PleI	GAGTC	1 cut(s)	985
PpsI	GAGTC	1 cut(s)	985
PpuMI	RGGWCCY	1 cut(s)	296
PshAI	GACNNNNGTC	1 cut(s)	628
PshBI	ATTAAT	1 cut(s)	480
Psp124BI	GAGCTC	1 cut(s)	195
Psp5II	RGGWCCY	1 cut(s)	296
Psp6I	CCWGG	1 cut(s)	538
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	4 cut(s)	6, 322, 414, 494
PspPI	GGNCC	7 cut(s)	4, 296, 321, 504, 516, 630, 836
PspPPI	RGGWCCY	1 cut(s)	296
PstI	CTGCAG	1 cut(s)	732
PstNI	CAGNNNCTG	1 cut(s)	779
PvuII	CAGCTG	2 cut(s)	473, 776
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
SacI	GAGCTC	1 cut(s)	195
SalI	GTCGAC	1 cut(s)	903
SaqAI	TTAA	3 cut(s)	180, 480, 962
Sau3AI	GATC	1 cut(s)	466
Sau96I	GGNCC	7 cut(s)	4, 296, 321, 504, 516, 630, 836
SchI	GAGTC	1 cut(s)	986
ScrFI	CCNGG	2 cut(s)	395, 540
SduI	GDGCHC	2 cut(s)	195, 402
SfcI	CTRYAG	1 cut(s)	728
SgrAI	CRCCGGYG	2 cut(s)	73, 224
SinI	GGWCC	4 cut(s)	4, 296, 630, 836
SmiI	ATTTAAAT	1 cut(s)	963
SmlI	CTYRAG	2 cut(s)	38, 179
SmoI	CTYRAG	2 cut(s)	38, 179
Sse9I	AATT	5 cut(s)	271, 343, 701, 736, 958
SsiI	CCGC	8 cut(s)	71, 134, 210, 219, 222, 533, 536, 725
SspMI	CTAG	2 cut(s)	300, 985
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	2 cut(s)	393, 538
StyI	CCWWGG	4 cut(s)	299, 435, 633, 719
SwaI	ATTTAAAT	1 cut(s)	963
TaaI	ACNGT	1 cut(s)	331
TaiI	ACGT	1 cut(s)	597
TaqI	TCGA	4 cut(s)	452, 565, 904, 980
TaqII	GACCGA	3 cut(s)	69, 304, 618
TasI	AATT	5 cut(s)	271, 343, 701, 736, 958
TauI	GCSGC	7 cut(s)	73, 136, 221, 224, 535, 538, 727
Tru1I	TTAA	3 cut(s)	180, 480, 962
Tru9I	TTAA	3 cut(s)	180, 480, 962
TscAI	CASTG	2 cut(s)	334, 341
TseI	GCWGC	4 cut(s)	553, 727, 758, 776
TspDTI	ATGAA	1 cut(s)	696
TspGWI	ACGGA	1 cut(s)	112
TspRI	CASTG	2 cut(s)	334, 341
Van91I	CCANNNNNTGG	1 cut(s)	441
Vha464I	CTTAAG	1 cut(s)	179
VpaK11BI	GGWCC	4 cut(s)	4, 296, 630, 836
VspI	ATTAAT	1 cut(s)	480
XapI	RAATTY	1 cut(s)	271
XmaJI	CCTAGG	1 cut(s)	299
XmiI	GTMKAC	2 cut(s)	904, 948
XspI	CTAG	2 cut(s)	300, 985

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.