Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8227835.1

Orthogroup ID

OG0003822

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 751

Gene Structure 751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8227835.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 625 bp

ttcccaccactccatgcgctcctgacctccgatcgctcctcctccgatcaccgccgcagatctctgatccatcctcaggtaaccaaccaccccccagatctggctacgtccacaaaccccccgtttctctgacgctttcgtttcttcacaggcaggaggtgttcggggatctgtgcccaatggaatccacgactccgagcccttgtaagatcaccctcaagctcataagagacgacgagcaagaacaagagccgaaaacgaacgaggacaaacccgcccagtctccttcgtcttcctccgtctcgtcgccgccgtcttccccttcctcctccgacgagattctccagtcccatctccaatcccaggagctcgtgctctacgatcccgccgtcgccgctaacgccggtggtggcgccaatcgcgcggctacagggaatcggattccgaatctgaacaaatccatttctccggtctcggtttcgaatagtcaaggtcctagggttttgccgtcggtcggggccttcactgtgcagtgcgccaattgcttcaagtggaggctgattccgacgaaggagcagtacgagcaaatccgggagcacattctggaacggccgttctactgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008327 GO:0019899 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD zf-CW

Protein Analysis

207

Amino Acids

22.48

Weight (kDa)

6.51

Isoelectric Point (pI)

81.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35330 AT5G35330 AT5G35330 AT5G35330
fragaria_vesca	FvH4_4g06240 FvH4_4g06240 FvH4_4g06240 FvH4_4g06240 FvH4_4g06240
malus_domestica	MD13G1234700.v1.1 MD16G1239500.v1.1
prunus_persica	Prupe.1G065600_v2.0.a1 Prupe.1G065600_v2.0.a1
pyrus_communis	pycom16g20040
rosa_chinensis	RchiOBHm_Chr4g0397961
rosa_laevigata	RLG00000009392
rosa_multiflora	Rmu_co8227835.1_g000001 Rmu_co8419633.1_g000001 Rmu_sc0001074.1_g000002 Rmu_sc0001074.1_g000005 Rmu_sc0003773.1_g000027
rosa_roxburghii	Rroxscaffold_5G00342870 Rroxscaffold_5G00342930
rosa_rugosa	Rorug04G0004900 Rorug04G0005000
rosa_samantha	Rh4AG081200 Rh4AG081600 Rh4BG079200 Rh4CG088800 Rh4CG089100 Rh4DG074700
rosa_wichuraiana	Rw0G019360 Rw4G006770 Rw4G006790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	412
AccII	CGCG	2 cut(s)	422, 424
AciI	CCGC	7 cut(s)	52, 55, 275, 310, 386, 395, 424
AclWI	GGATC	3 cut(s)	61, 176, 376
AcoI	YGGCCR	1 cut(s)	610
AcyI	GRCGYC	1 cut(s)	413
AfaI	GTAC	1 cut(s)	580
AfiI	CCNNNNNNNGG	4 cut(s)	76, 100, 363, 514
AgsI	TTSAA	1 cut(s)	549
AjnI	CCWGG	1 cut(s)	362
AloI	GAACNNNNNNTCC	1 cut(s)	598
AluBI	AGCT	2 cut(s)	222, 369
AluI	AGCT	2 cut(s)	222, 369
Alw21I	GWGCWC	3 cut(s)	371, 377, 599
Alw26I	GTCTC	4 cut(s)	224, 287, 306, 477
AlwI	GGATC	3 cut(s)	61, 176, 376
AoxI	GGCC	2 cut(s)	518, 610
AspA2I	CCTAGG	1 cut(s)	496
AspLEI	GCGC	4 cut(s)	19, 415, 424, 538
AspS9I	GGNCC	2 cut(s)	493, 518
AsuC2I	CCSGG	1 cut(s)	592
AsuHPI	GGTGA	2 cut(s)	41, 204
AsuII	TTCGAA	1 cut(s)	481
AvaII	GGWCC	1 cut(s)	493
AvrII	CCTAGG	1 cut(s)	496
AxyI	CCTNAGG	1 cut(s)	75
BaeGI	GKGCMC	1 cut(s)	178
BanI	GGYRCC	1 cut(s)	412
BanII	GRGCYC	2 cut(s)	202, 371
BarI	GAAGNNNNNNTAC	2 cut(s)	562, 594
BauI	CACGAG	1 cut(s)	370
BbsI	GAAGAC	2 cut(s)	284, 308
Bbv12I	GWGCWC	3 cut(s)	371, 377, 599
BccI	CCATC	2 cut(s)	78, 359
BceAI	ACGGC	4 cut(s)	297, 373, 492, 597
BciT130I	CCWGG	1 cut(s)	364
BcnI	CCSGG	1 cut(s)	592
BcoDI	GTCTC	4 cut(s)	224, 287, 306, 477
BfaI	CTAG	1 cut(s)	497
BfmI	CTRYAG	1 cut(s)	428
BfoI	RGCGCY	1 cut(s)	416
BglII	AGATCT	2 cut(s)	59, 97
BisI	GCNGC	4 cut(s)	55, 310, 395, 425
BlnI	CCTAGG	1 cut(s)	496
BlsI	GCNGC	4 cut(s)	56, 311, 396, 426
Bme1390I	CCNGG	2 cut(s)	364, 592
Bme18I	GGWCC	1 cut(s)	493
BmgT120I	GGNCC	2 cut(s)	493, 518
BmiI	GGNNCC	2 cut(s)	414, 519
BmrFI	CCNGG	2 cut(s)	364, 592
BmrI	ACTGGG	1 cut(s)	273
BmuI	ACTGGG	1 cut(s)	273
BpiI	GAAGAC	2 cut(s)	284, 308
BpmI	CTGGAG	1 cut(s)	328
Bpu14I	TTCGAA	1 cut(s)	481
BpuEI	CTTGAG	1 cut(s)	202
BpuMI	CCSGG	1 cut(s)	592
BsaHI	GRCGYC	1 cut(s)	413
BsaI	GGTCTC	1 cut(s)	477
BsaJI	CCNNGG	2 cut(s)	362, 496
BsaWI	WCCGGW	1 cut(s)	468
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 100, 363, 514
Bse118I	RCCGGY	1 cut(s)	403
Bse1I	ACTGG	2 cut(s)	279, 345
Bse21I	CCTNAGG	1 cut(s)	75
BseBI	CCWGG	1 cut(s)	364
BseDI	CCNNGG	2 cut(s)	362, 496
BseGI	GGATG	1 cut(s)	70
BseLI	CCNNNNNNNGG	4 cut(s)	76, 100, 363, 514
BseMII	CTCAG	1 cut(s)	89
BseNI	ACTGG	2 cut(s)	279, 345
BseRI	GAGGAG	3 cut(s)	28, 31, 318
BseSI	GKGCMC	1 cut(s)	178
BseX3I	CGGCCG	1 cut(s)	610
BsgI	GTGCAG	1 cut(s)	550
Bsh1236I	CGCG	2 cut(s)	422, 424
Bsh1285I	CGRYCG	3 cut(s)	34, 515, 613
BshFI	GGCC	2 cut(s)	520, 612
BshNI	GGYRCC	1 cut(s)	412
BsiEI	CGRYCG	3 cut(s)	34, 515, 613
BsiHKAI	GWGCWC	3 cut(s)	371, 377, 599
BsiSI	CCGG	3 cut(s)	404, 469, 591
BslFI	GGGAC	1 cut(s)	333
BslI	CCNNNNNNNGG	4 cut(s)	76, 100, 363, 514
BsmAI	GTCTC	4 cut(s)	224, 287, 306, 477
BsmBI	CGTCTC	2 cut(s)	224, 306
BsmFI	GGGAC	1 cut(s)	333
BsnI	GGCC	2 cut(s)	520, 612
Bso31I	GGTCTC	1 cut(s)	477
Bsp119I	TTCGAA	1 cut(s)	481
Bsp1286I	GDGCHC	5 cut(s)	178, 202, 371, 377, 599
Bsp143I	GATC	8 cut(s)	31, 46, 59, 66, 97, 168, 209, 381
BspACI	CCGC	7 cut(s)	52, 55, 275, 310, 386, 395, 424
BspANI	GGCC	2 cut(s)	520, 612
BspCNI	CTCAG	1 cut(s)	88
BspFNI	CGCG	2 cut(s)	422, 424
BspLI	GGNNCC	2 cut(s)	414, 519
BspPI	GGATC	3 cut(s)	61, 176, 376
BspT104I	TTCGAA	1 cut(s)	481
BspT107I	GGYRCC	1 cut(s)	412
BspTNI	GGTCTC	1 cut(s)	477
BsrFI	RCCGGY	1 cut(s)	403
BsrI	ACTGG	2 cut(s)	279, 345
BssAI	RCCGGY	1 cut(s)	403
BssECI	CCNNGG	2 cut(s)	362, 496
BssMI	GATC	8 cut(s)	31, 46, 59, 66, 97, 168, 209, 381
BssNI	GRCGYC	1 cut(s)	413
BssSI	CACGAG	1 cut(s)	370
BssT1I	CCWWGG	1 cut(s)	496
Bst2BI	CACGAG	1 cut(s)	370
Bst2UI	CCWGG	1 cut(s)	364
Bst4CI	ACNGT	2 cut(s)	528, 622
BstACI	GRCGYC	1 cut(s)	413
BstBI	TTCGAA	1 cut(s)	481
BstDEI	CTNAG	1 cut(s)	75
BstEII	GGTNACC	1 cut(s)	79
BstF5I	GGATG	1 cut(s)	70
BstFNI	CGCG	2 cut(s)	422, 424
BstH2I	RGCGCY	1 cut(s)	416
BstHHI	GCGC	4 cut(s)	19, 415, 424, 538
BstKTI	GATC	8 cut(s)	34, 49, 62, 69, 100, 171, 212, 384
BstMAI	GTCTC	4 cut(s)	224, 287, 306, 477
BstMBI	GATC	8 cut(s)	31, 46, 59, 66, 97, 168, 209, 381
BstMCI	CGRYCG	3 cut(s)	34, 515, 613
BstMWI	GCNNNNNNNGC	6 cut(s)	394, 400, 419, 421, 542, 582
BstNI	CCWGG	1 cut(s)	364
BstPI	GGTNACC	1 cut(s)	79
BstSCI	CCNGG	2 cut(s)	362, 590
BstSFI	CTRYAG	1 cut(s)	428
BstSLI	GKGCMC	1 cut(s)	178
BstUI	CGCG	2 cut(s)	422, 424
BstV2I	GAAGAC	2 cut(s)	284, 308
BstX2I	RGATCY	3 cut(s)	59, 97, 168
BstYI	RGATCY	3 cut(s)	59, 97, 168
BstZI	CGGCCG	1 cut(s)	610
Bsu36I	CCTNAGG	1 cut(s)	75
BsuRI	GGCC	2 cut(s)	520, 612
BtsCI	GGATG	1 cut(s)	70
BtsI	GCAGTG	1 cut(s)	538
BtsIMutI	CAGTG	2 cut(s)	524, 538
CfoI	GCGC	4 cut(s)	19, 415, 424, 538
Cfr10I	RCCGGY	1 cut(s)	403
Cfr13I	GGNCC	2 cut(s)	493, 518
CseI	GACGC	1 cut(s)	141
Csp6I	GTAC	1 cut(s)	579
CviAII	CATG	1 cut(s)	14
CviJI	RGCY	9 cut(s)	104, 200, 222, 252, 369, 427, 520, 558, 612
CviKI_1	RGCY	9 cut(s)	104, 200, 222, 252, 369, 427, 520, 558, 612
CviQI	GTAC	1 cut(s)	579
DdeI	CTNAG	1 cut(s)	75
DinI	GGCGCC	1 cut(s)	414
DpnI	GATC	8 cut(s)	33, 48, 61, 68, 99, 170, 211, 383
DpnII	GATC	8 cut(s)	31, 46, 59, 66, 97, 168, 209, 381
EaeI	YGGCCR	1 cut(s)	610
EagI	CGGCCG	1 cut(s)	610
Ecl136II	GAGCTC	1 cut(s)	369
EclXI	CGGCCG	1 cut(s)	610
Eco130I	CCWWGG	1 cut(s)	496
Eco24I	GRGCYC	2 cut(s)	202, 371
Eco31I	GGTCTC	1 cut(s)	477
Eco47I	GGWCC	1 cut(s)	493
Eco52I	CGGCCG	1 cut(s)	610
Eco53kI	GAGCTC	1 cut(s)	369
Eco81I	CCTNAGG	1 cut(s)	75
Eco91I	GGTNACC	1 cut(s)	79
EcoICRI	GAGCTC	1 cut(s)	369
EcoO109I	RGGNCCY	2 cut(s)	493, 518
EcoO65I	GGTNACC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	362
EcoT14I	CCWWGG	1 cut(s)	496
EcoT38I	GRGCYC	2 cut(s)	202, 371
EgeI	GGCGCC	1 cut(s)	414
EheI	GGCGCC	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	496
Esp3I	CGTCTC	2 cut(s)	224, 306
FaeI	CATG	1 cut(s)	17
FaiI	YATR	2 cut(s)	15, 226
FaqI	GGGAC	1 cut(s)	333
FatI	CATG	1 cut(s)	13
FauI	CCCGC	2 cut(s)	282, 393
Fnu4HI	GCNGC	4 cut(s)	55, 310, 395, 425
FokI	GGATG	1 cut(s)	57
FriOI	GRGCYC	2 cut(s)	202, 371
Fsp4HI	GCNGC	4 cut(s)	55, 310, 395, 425
FspBI	CTAG	1 cut(s)	497
GlaI	GCGC	4 cut(s)	18, 414, 423, 537
GluI	GCNGC	4 cut(s)	55, 310, 395, 425
GsuI	CTGGAG	1 cut(s)	328
HaeII	RGCGCY	1 cut(s)	416
HaeIII	GGCC	2 cut(s)	520, 612
HapII	CCGG	3 cut(s)	404, 469, 591
HgaI	GACGC	1 cut(s)	141
HhaI	GCGC	4 cut(s)	19, 415, 424, 538
Hin1I	GRCGYC	1 cut(s)	413
Hin1II	CATG	1 cut(s)	17
Hin6I	GCGC	4 cut(s)	17, 413, 422, 536
HinP1I	GCGC	4 cut(s)	17, 413, 422, 536
HinfI	GANTC	7 cut(s)	184, 192, 339, 435, 441, 447, 561
HpaII	CCGG	3 cut(s)	404, 469, 591
HphI	GGTGA	2 cut(s)	41, 204
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188III	TCNNGA	2 cut(s)	22, 604
Hpy8I	GTNNAC	1 cut(s)	111
Hpy99I	CGWCG	6 cut(s)	238, 309, 337, 394, 513, 570
HpyAV	CCTTC	4 cut(s)	296, 332, 531, 564
HpyCH4III	ACNGT	2 cut(s)	528, 622
HpyCH4IV	ACGT	1 cut(s)	107
HpyCH4V	TGCA	1 cut(s)	531
HpyF10VI	GCNNNNNNNGC	6 cut(s)	394, 400, 419, 421, 542, 582
HpyF3I	CTNAG	1 cut(s)	75
HpySE526I	ACGT	1 cut(s)	107
Hsp92I	GRCGYC	1 cut(s)	413
Hsp92II	CATG	1 cut(s)	17
HspAI	GCGC	4 cut(s)	17, 413, 422, 536
KasI	GGCGCC	1 cut(s)	412
Kzo9I	GATC	8 cut(s)	31, 46, 59, 66, 97, 168, 209, 381
LmnI	GCTCC	5 cut(s)	24, 41, 366, 573, 594
MaeI	CTAG	1 cut(s)	497
MaeII	ACGT	1 cut(s)	107
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	8 cut(s)	33, 48, 61, 68, 99, 170, 211, 383
MboI	GATC	8 cut(s)	31, 46, 59, 66, 97, 168, 209, 381
MboII	GAAGA	3 cut(s)	136, 284, 308
MfeI	CAATTG	1 cut(s)	540
MflI	RGATCY	3 cut(s)	59, 97, 168
MhlI	GDGCHC	5 cut(s)	178, 202, 371, 377, 599
MluCI	AATT	1 cut(s)	540
Mly113I	GGCGCC	1 cut(s)	413
MlyI	GAGTC	1 cut(s)	186
MmeI	TCCRAC	2 cut(s)	356, 589
MspI	CCGG	3 cut(s)	404, 469, 591
MspR9I	CCNGG	2 cut(s)	364, 592
MunI	CAATTG	1 cut(s)	540
MvaI	CCWGG	1 cut(s)	364
MvnI	CGCG	2 cut(s)	422, 424
MwoI	GCNNNNNNNGC	6 cut(s)	394, 400, 419, 421, 542, 582
NarI	GGCGCC	1 cut(s)	413
NciI	CCSGG	1 cut(s)	592
NdeII	GATC	8 cut(s)	31, 46, 59, 66, 97, 168, 209, 381
NlaIII	CATG	1 cut(s)	17
NlaIV	GGNNCC	2 cut(s)	414, 519
NspV	TTCGAA	1 cut(s)	481
PcsI	WCGNNNNNNNCGW	3 cut(s)	310, 377, 386
PfeI	GAWTC	6 cut(s)	184, 339, 435, 441, 447, 561
PfoI	TCCNGGA	1 cut(s)	590
PkrI	GCNGC	4 cut(s)	56, 311, 396, 426
Ple19I	CGATCG	1 cut(s)	34
PleI	GAGTC	1 cut(s)	186
PluTI	GGCGCC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	186
PpuMI	RGGWCCY	1 cut(s)	493
Psp124BI	GAGCTC	1 cut(s)	371
Psp5II	RGGWCCY	1 cut(s)	493
Psp6I	CCWGG	1 cut(s)	362
PspEI	GGTNACC	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	362
PspN4I	GGNNCC	2 cut(s)	414, 519
PspPI	GGNCC	2 cut(s)	493, 518
PspPPI	RGGWCCY	1 cut(s)	493
PsuI	RGATCY	3 cut(s)	59, 97, 168
PvuI	CGATCG	1 cut(s)	34
RsaI	GTAC	1 cut(s)	580
RsaNI	GTAC	1 cut(s)	579
SacI	GAGCTC	1 cut(s)	371
SatI	GCNGC	4 cut(s)	55, 310, 395, 425
Sau3AI	GATC	8 cut(s)	31, 46, 59, 66, 97, 168, 209, 381
Sau96I	GGNCC	2 cut(s)	493, 518
SchI	GAGTC	1 cut(s)	186
ScrFI	CCNGG	2 cut(s)	364, 592
SduI	GDGCHC	5 cut(s)	178, 202, 371, 377, 599
SetI	ASST	7 cut(s)	29, 81, 110, 161, 224, 371, 495
SfcI	CTRYAG	1 cut(s)	428
SfoI	GGCGCC	1 cut(s)	414
SfuI	TTCGAA	1 cut(s)	481
SgrAI	CRCCGGYG	1 cut(s)	403
SinI	GGWCC	1 cut(s)	493
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
Sse9I	AATT	1 cut(s)	540
SsiI	CCGC	7 cut(s)	52, 55, 275, 310, 386, 395, 424
SspDI	GGCGCC	1 cut(s)	412
SspMI	CTAG	1 cut(s)	497
SstI	GAGCTC	1 cut(s)	371
StyD4I	CCNGG	2 cut(s)	362, 590
StyI	CCWWGG	1 cut(s)	496
TaaI	ACNGT	2 cut(s)	528, 622
TaiI	ACGT	1 cut(s)	110
TaqI	TCGA	1 cut(s)	481
TaqII	GACCGA	1 cut(s)	501
TasI	AATT	1 cut(s)	540
TauI	GCSGC	4 cut(s)	57, 312, 397, 427
TfiI	GAWTC	6 cut(s)	184, 339, 435, 441, 447, 561
TscAI	CASTG	2 cut(s)	531, 538
TspGWI	ACGGA	1 cut(s)	288
TspRI	CASTG	2 cut(s)	531, 538
VpaK11BI	GGWCC	1 cut(s)	493
XmaJI	CCTAGG	1 cut(s)	496
XspI	CTAG	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.