Rh4AG081600

methyl-CpG-binding domain-containing protein 2-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
17075687 .. 17078494
2808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG081600.1

Sequence Viewer

Length: 846 bp
ATGGAATCCACGACTCCGAGCCCTTGTAAGATCACCCTCAAGCTCAGAAGAGACGACGAGCAAGAACAAGAGCCGAAAACGAACGAGGACAAACCCGCCCAGTCTCCTTCGTCTTCCTCCGTCTCGTCGCCGCCGTCTTCCCCTTCCTCCTCCGACGAGATTCTCCAGTCCCATCTCCAATCCCAGGAGCTCGTGCTCTACGATCCCGCCGTCGCCGCTAATGCCGGTGGTGGCGCCAATCGCGCTGCTACAGGGAATCGGATTCCGAATCTGAACAAATCCATTTCTCCGGTCTCGGTTTCGAATAGTCAAGGTCCTAGGGTTTTGCCGTCGGTCGGGGCCTTCACTGTGCAGTGCGCCAATTGCTTCAAGTGGAGGCTGATTCCGACGAAGGAGCAGTACGAGCAAATCCGGGAGCACATTCTGGAACGGCCGTTCTACTGTGAAACTGCAAAGGAATGGAGGTCGTCGATTTCGTGTGATGATCCGGCTGATATTACTCAAGACGGGAGCCGGCTCTGGGCCATTGATAGGCCCAACATTGCTCAGCCACCGCCCGGCTGGCAACGGCTACTCAGGATTCGAGGTGAAGGAAGCACCAAGTTTGCAGATGTTTATTATCAAGCGCCGTCGGGCAAGAGACTTCGGTCCATGGTGGAGGTTCAAAAGTATTTGATCGAACATCCTGAGTATATGGTGGATGGGCTATCTATGACACAATTTTCATTTCAAATTCCAAGGCCTCTGCAGGAGAATTATGTGAGGAAACGCCCTGCTGCTCCTCGTTTGACAGCTGCTGCTCATGCCAGTAGAACTCTTGAACCTACTGAAGGTGAGTATTTATAA

Protein Analysis

281

Amino Acids

31.33

Weight (kDa)

6.91

Isoelectric Point (pI)

73.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CW PF07496 116 - 165 1.5e-11 CW-type Zinc Finger
MBD PF01429 185 - 245 5.2e-14 Methyl-CpG binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 844
AccB1I GGYRCC 1 cut(s) 233
AccII CGCG 1 cut(s) 243
AciI CCGC 5 cut(s) 96, 131, 207, 216, 554
AclWI GGATC 2 cut(s) 197, 479
AcoI YGGCCR 1 cut(s) 431
AcsI RAATTY 1 cut(s) 732
AcyI GRCGYC 1 cut(s) 234
AfaI GTAC 1 cut(s) 401
AfiI CCNNNNNNNGG 6 cut(s) 184, 335, 520, 531, 557, 830
AgsI TTSAA 4 cut(s) 370, 665, 731, 821
AjnI CCWGG 1 cut(s) 183
AloI GAACNNNNNNTCC 2 cut(s) 419, 451
AluBI AGCT 3 cut(s) 43, 190, 794
AluI AGCT 3 cut(s) 43, 190, 794
Alw21I GWGCWC 3 cut(s) 192, 198, 420
Alw26I GTCTC 5 cut(s) 45, 108, 127, 298, 634
AlwI GGATC 2 cut(s) 197, 479
AlwNI CAGNNNCTG 1 cut(s) 797
AoxI GGCC 5 cut(s) 339, 431, 522, 533, 740
ApeKI GCWGC 4 cut(s) 245, 776, 794, 797
ApoI RAATTY 1 cut(s) 732
AspA2I CCTAGG 1 cut(s) 317
AspLEI GCGC 4 cut(s) 236, 245, 359, 628
AspS9I GGNCC 5 cut(s) 314, 339, 522, 534, 648
AsuC2I CCSGG 2 cut(s) 413, 558
AsuHPI GGTGA 3 cut(s) 25, 599, 845
AsuII TTCGAA 1 cut(s) 302
AvaII GGWCC 2 cut(s) 314, 648
AvrII CCTAGG 1 cut(s) 317
BanI GGYRCC 1 cut(s) 233
BanII GRGCYC 2 cut(s) 23, 192
BarI GAAGNNNNNNTAC 2 cut(s) 383, 415
BauI CACGAG 1 cut(s) 191
BbsI GAAGAC 2 cut(s) 105, 129
Bbv12I GWGCWC 3 cut(s) 192, 198, 420
BbvI GCAGC 4 cut(s) 232, 763, 781, 784
BccI CCATC 2 cut(s) 180, 695
BceAI ACGGC 7 cut(s) 118, 194, 313, 418, 446, 584, 613
BciT130I CCWGG 1 cut(s) 185
BcnI CCSGG 2 cut(s) 413, 558
BcoDI GTCTC 5 cut(s) 45, 108, 127, 298, 634
BfaI CTAG 1 cut(s) 318
BfmI CTRYAG 2 cut(s) 249, 746
BfoI RGCGCY 2 cut(s) 237, 629
BglI GCCNNNNNGGC 1 cut(s) 562
BisI GCNGC 6 cut(s) 131, 216, 246, 777, 795, 798
BlnI CCTAGG 1 cut(s) 317
BlpI GCTNAGC 1 cut(s) 546
BlsI GCNGC 6 cut(s) 132, 217, 247, 778, 796, 799
Bme1390I CCNGG 3 cut(s) 185, 413, 558
Bme18I GGWCC 2 cut(s) 314, 648
BmgT120I GGNCC 5 cut(s) 314, 339, 522, 534, 648
BmiI GGNNCC 3 cut(s) 235, 340, 512
BmrFI CCNGG 3 cut(s) 185, 413, 558
BmrI ACTGGG 1 cut(s) 94
BmuI ACTGGG 1 cut(s) 94
BoxI GACNNNNGTC 1 cut(s) 646
BpiI GAAGAC 2 cut(s) 105, 129
BpmI CTGGAG 1 cut(s) 149
Bpu1102I GCTNAGC 1 cut(s) 546
Bpu14I TTCGAA 1 cut(s) 302
BpuEI CTTGAG 2 cut(s) 23, 486
BpuMI CCSGG 2 cut(s) 413, 558
BsaHI GRCGYC 1 cut(s) 234
BsaI GGTCTC 1 cut(s) 298
BsaJI CCNNGG 4 cut(s) 183, 317, 651, 737
BsaWI WCCGGW 1 cut(s) 289
Bsc4I CCNNNNNNNGG 6 cut(s) 184, 335, 520, 531, 557, 830
Bse118I RCCGGY 2 cut(s) 224, 513
Bse1I ACTGG 3 cut(s) 100, 166, 807
Bse3DI GCAATG 1 cut(s) 540
BseBI CCWGG 1 cut(s) 185
BseDI CCNNGG 4 cut(s) 183, 317, 651, 737
BseGI GGATG 2 cut(s) 682, 706
BseLI CCNNNNNNNGG 6 cut(s) 184, 335, 520, 531, 557, 830
BseMI GCAATG 1 cut(s) 540
BseMII CTCAG 4 cut(s) 58, 560, 589, 678
BseNI ACTGG 3 cut(s) 100, 166, 807
BseRI GAGGAG 2 cut(s) 139, 771
BseX3I CGGCCG 1 cut(s) 431
BseXI GCAGC 4 cut(s) 232, 763, 781, 784
BsgI GTGCAG 1 cut(s) 371
Bsh1236I CGCG 1 cut(s) 243
Bsh1285I CGRYCG 2 cut(s) 336, 434
BshFI GGCC 5 cut(s) 341, 433, 524, 535, 742
BshNI GGYRCC 1 cut(s) 233
BsiEI CGRYCG 2 cut(s) 336, 434
BsiHKAI GWGCWC 3 cut(s) 192, 198, 420
BsiSI CCGG 6 cut(s) 225, 290, 412, 488, 514, 558
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 6 cut(s) 184, 335, 520, 531, 557, 830
BsmAI GTCTC 5 cut(s) 45, 108, 127, 298, 634
BsmBI CGTCTC 2 cut(s) 45, 127
BsmFI GGGAC 1 cut(s) 154
BsnI GGCC 5 cut(s) 341, 433, 524, 535, 742
Bso31I GGTCTC 1 cut(s) 298
Bsp119I TTCGAA 1 cut(s) 302
Bsp1286I GDGCHC 4 cut(s) 23, 192, 198, 420
Bsp143I GATC 4 cut(s) 30, 202, 484, 675
Bsp1720I GCTNAGC 1 cut(s) 546
Bsp19I CCATGG 1 cut(s) 651
BspACI CCGC 5 cut(s) 96, 131, 207, 216, 554
BspANI GGCC 5 cut(s) 341, 433, 524, 535, 742
BspCNI CTCAG 4 cut(s) 57, 559, 588, 679
BspFNI CGCG 1 cut(s) 243
BspLI GGNNCC 3 cut(s) 235, 340, 512
BspMAI CTGCAG 1 cut(s) 750
BspPI GGATC 2 cut(s) 197, 479
BspT104I TTCGAA 1 cut(s) 302
BspT107I GGYRCC 1 cut(s) 233
BspTNI GGTCTC 1 cut(s) 298
BsrDI GCAATG 1 cut(s) 540
BsrFI RCCGGY 2 cut(s) 224, 513
BsrI ACTGG 3 cut(s) 100, 166, 807
BssAI RCCGGY 2 cut(s) 224, 513
BssECI CCNNGG 4 cut(s) 183, 317, 651, 737
BssMI GATC 4 cut(s) 30, 202, 484, 675
BssNI GRCGYC 1 cut(s) 234
BssSI CACGAG 1 cut(s) 191
BssT1I CCWWGG 3 cut(s) 317, 651, 737
Bst2BI CACGAG 1 cut(s) 191
Bst2UI CCWGG 1 cut(s) 185
Bst4CI ACNGT 2 cut(s) 349, 443
Bst6I CTCTTC 1 cut(s) 43
BstACI GRCGYC 1 cut(s) 234
BstBI TTCGAA 1 cut(s) 302
BstC8I GCNNGC 2 cut(s) 515, 563
BstDEI CTNAG 4 cut(s) 44, 546, 575, 687
BstDSI CCRYGG 1 cut(s) 651
BstENI CCTNNNNNAGG 1 cut(s) 828
BstF5I GGATG 2 cut(s) 682, 706
BstFNI CGCG 1 cut(s) 243
BstH2I RGCGCY 2 cut(s) 237, 629
BstHHI GCGC 4 cut(s) 236, 245, 359, 628
BstKTI GATC 4 cut(s) 33, 205, 487, 678
BstMAI GTCTC 5 cut(s) 45, 108, 127, 298, 634
BstMBI GATC 4 cut(s) 30, 202, 484, 675
BstMCI CGRYCG 2 cut(s) 336, 434
BstMWI GCNNNNNNNGC 8 cut(s) 215, 221, 240, 242, 363, 403, 562, 803
BstNI CCWGG 1 cut(s) 185
BstPAI GACNNNNGTC 1 cut(s) 646
BstSCI CCNGG 3 cut(s) 183, 411, 556
BstSFI CTRYAG 2 cut(s) 249, 746
BstUI CGCG 1 cut(s) 243
BstV1I GCAGC 4 cut(s) 232, 763, 781, 784
BstV2I GAAGAC 2 cut(s) 105, 129
BstZI CGGCCG 1 cut(s) 431
BsuRI GGCC 5 cut(s) 341, 433, 524, 535, 742
BtgI CCRYGG 1 cut(s) 651
BtsCI GGATG 2 cut(s) 682, 706
BtsI GCAGTG 1 cut(s) 359
BtsIMutI CAGTG 2 cut(s) 345, 359
Cac8I GCNNGC 2 cut(s) 515, 563
CaiI CAGNNNCTG 1 cut(s) 797
CfoI GCGC 4 cut(s) 236, 245, 359, 628
Cfr10I RCCGGY 2 cut(s) 224, 513
Cfr13I GGNCC 5 cut(s) 314, 339, 522, 534, 648
Csp6I GTAC 1 cut(s) 400
CviAII CATG 2 cut(s) 652, 803
CviQI GTAC 1 cut(s) 400
DdeI CTNAG 4 cut(s) 44, 546, 575, 687
DinI GGCGCC 1 cut(s) 235
DpnI GATC 4 cut(s) 32, 204, 486, 677
DpnII GATC 4 cut(s) 30, 202, 484, 675
EaeI YGGCCR 1 cut(s) 431
EagI CGGCCG 1 cut(s) 431
Eam1104I CTCTTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 43
Ecl136II GAGCTC 1 cut(s) 190
EclXI CGGCCG 1 cut(s) 431
Eco130I CCWWGG 3 cut(s) 317, 651, 737
Eco147I AGGCCT 1 cut(s) 742
Eco24I GRGCYC 2 cut(s) 23, 192
Eco31I GGTCTC 1 cut(s) 298
Eco47I GGWCC 2 cut(s) 314, 648
Eco52I CGGCCG 1 cut(s) 431
Eco53kI GAGCTC 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 190
EcoNI CCTNNNNNAGG 1 cut(s) 828
EcoO109I RGGNCCY 2 cut(s) 314, 339
EcoRII CCWGG 1 cut(s) 183
EcoT14I CCWWGG 3 cut(s) 317, 651, 737
EcoT38I GRGCYC 2 cut(s) 23, 192
EgeI GGCGCC 1 cut(s) 235
EheI GGCGCC 1 cut(s) 235
ErhI CCWWGG 3 cut(s) 317, 651, 737
Esp3I CGTCTC 2 cut(s) 45, 127
FaeI CATG 2 cut(s) 655, 806
FaiI YATR 7 cut(s) 653, 693, 695, 713, 759, 804, 844
FaqI GGGAC 1 cut(s) 154
FatI CATG 2 cut(s) 651, 802
FauI CCCGC 2 cut(s) 103, 214
Fnu4HI GCNGC 6 cut(s) 131, 216, 246, 777, 795, 798
FokI GGATG 2 cut(s) 669, 713
FriOI GRGCYC 2 cut(s) 23, 192
Fsp4HI GCNGC 6 cut(s) 131, 216, 246, 777, 795, 798
FspBI CTAG 1 cut(s) 318
GlaI GCGC 4 cut(s) 235, 244, 358, 627
GluI GCNGC 6 cut(s) 131, 216, 246, 777, 795, 798
GsuI CTGGAG 1 cut(s) 149
HaeII RGCGCY 2 cut(s) 237, 629
HaeIII GGCC 5 cut(s) 341, 433, 524, 535, 742
HapII CCGG 6 cut(s) 225, 290, 412, 488, 514, 558
HhaI GCGC 4 cut(s) 236, 245, 359, 628
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 2 cut(s) 655, 806
Hin6I GCGC 4 cut(s) 234, 243, 357, 626
HinP1I GCGC 4 cut(s) 234, 243, 357, 626
HinfI GANTC 8 cut(s) 5, 13, 160, 256, 262, 268, 382, 580
HpaII CCGG 6 cut(s) 225, 290, 412, 488, 514, 558
HphI GGTGA 3 cut(s) 25, 599, 845
Hpy188I TCNGA 7 cut(s) 18, 47, 154, 261, 267, 273, 387
Hpy188III TCNNGA 5 cut(s) 425, 503, 577, 686, 818
Hpy99I CGWCG 8 cut(s) 59, 130, 158, 215, 334, 391, 472, 634
HpyAV CCTTC 6 cut(s) 117, 153, 352, 385, 584, 824
HpyCH4III ACNGT 2 cut(s) 349, 443
HpyCH4V TGCA 4 cut(s) 352, 452, 608, 748
HpyF10VI GCNNNNNNNGC 8 cut(s) 215, 221, 240, 242, 363, 403, 562, 803
HpyF3I CTNAG 4 cut(s) 44, 546, 575, 687
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 2 cut(s) 655, 806
HspAI GCGC 4 cut(s) 234, 243, 357, 626
KasI GGCGCC 1 cut(s) 233
KroI GCCGGC 1 cut(s) 513
KroNI GCCGGC 1 cut(s) 515
Kzo9I GATC 4 cut(s) 30, 202, 484, 675
LmnI GCTCC 5 cut(s) 187, 394, 415, 510, 784
Lsp1109I GCAGC 4 cut(s) 232, 763, 781, 784
MaeI CTAG 1 cut(s) 318
MalI GATC 4 cut(s) 32, 204, 486, 677
MboI GATC 4 cut(s) 30, 202, 484, 675
MboII GAAGA 3 cut(s) 60, 105, 129
MfeI CAATTG 1 cut(s) 361
MhlI GDGCHC 4 cut(s) 23, 192, 198, 420
MluCI AATT 4 cut(s) 361, 719, 732, 754
Mly113I GGCGCC 1 cut(s) 234
MlyI GAGTC 1 cut(s) 7
MmeI TCCRAC 2 cut(s) 177, 410
MroNI GCCGGC 1 cut(s) 513
MspA1I CMGCKG 1 cut(s) 794
MspI CCGG 6 cut(s) 225, 290, 412, 488, 514, 558
MspR9I CCNGG 3 cut(s) 185, 413, 558
MunI CAATTG 1 cut(s) 361
MvaI CCWGG 1 cut(s) 185
MvnI CGCG 1 cut(s) 243
MwoI GCNNNNNNNGC 8 cut(s) 215, 221, 240, 242, 363, 403, 562, 803
NaeI GCCGGC 1 cut(s) 515
NarI GGCGCC 1 cut(s) 234
NciI CCSGG 2 cut(s) 413, 558
NcoI CCATGG 1 cut(s) 651
NdeII GATC 4 cut(s) 30, 202, 484, 675
NgoMIV GCCGGC 1 cut(s) 513
NlaIII CATG 2 cut(s) 655, 806
NlaIV GGNNCC 3 cut(s) 235, 340, 512
NspV TTCGAA 1 cut(s) 302
PceI AGGCCT 1 cut(s) 742
PcsI WCGNNNNNNNCGW 4 cut(s) 131, 198, 207, 473
PdiI GCCGGC 1 cut(s) 515
PfeI GAWTC 7 cut(s) 5, 160, 256, 262, 268, 382, 580
PfoI TCCNGGA 1 cut(s) 411
PkrI GCNGC 6 cut(s) 132, 217, 247, 778, 796, 799
PleI GAGTC 1 cut(s) 7
PluTI GGCGCC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 7
PpuMI RGGWCCY 1 cut(s) 314
PshAI GACNNNNGTC 1 cut(s) 646
PsiI TTATAA 1 cut(s) 844
Psp124BI GAGCTC 1 cut(s) 192
Psp5II RGGWCCY 1 cut(s) 314
Psp6I CCWGG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 183
PspN4I GGNNCC 3 cut(s) 235, 340, 512
PspPI GGNCC 5 cut(s) 314, 339, 522, 534, 648
PspPPI RGGWCCY 1 cut(s) 314
PstI CTGCAG 1 cut(s) 750
PstNI CAGNNNCTG 1 cut(s) 797
PvuII CAGCTG 1 cut(s) 794
RsaI GTAC 1 cut(s) 401
RsaNI GTAC 1 cut(s) 400
SacI GAGCTC 1 cut(s) 192
SatI GCNGC 6 cut(s) 131, 216, 246, 777, 795, 798
Sau3AI GATC 4 cut(s) 30, 202, 484, 675
Sau96I GGNCC 5 cut(s) 314, 339, 522, 534, 648
SchI GAGTC 1 cut(s) 7
ScrFI CCNGG 3 cut(s) 185, 413, 558
SduI GDGCHC 4 cut(s) 23, 192, 198, 420
SetI ASST 9 cut(s) 45, 192, 316, 467, 589, 663, 796, 826, 835
SfcI CTRYAG 2 cut(s) 249, 746
SfoI GGCGCC 1 cut(s) 235
SfuI TTCGAA 1 cut(s) 302
SinI GGWCC 2 cut(s) 314, 648
SmlI CTYRAG 2 cut(s) 38, 501
SmoI CTYRAG 2 cut(s) 38, 501
Sse9I AATT 4 cut(s) 361, 719, 732, 754
SseBI AGGCCT 1 cut(s) 742
SsiI CCGC 5 cut(s) 96, 131, 207, 216, 554
SspDI GGCGCC 1 cut(s) 233
SspMI CTAG 1 cut(s) 318
SstI GAGCTC 1 cut(s) 192
StuI AGGCCT 1 cut(s) 742
StyD4I CCNGG 3 cut(s) 183, 411, 556
StyI CCWWGG 3 cut(s) 317, 651, 737
TaaI ACNGT 2 cut(s) 349, 443
TaqI TCGA 4 cut(s) 302, 470, 583, 678
TaqII GACCGA 2 cut(s) 322, 636
TasI AATT 4 cut(s) 361, 719, 732, 754
TauI GCSGC 2 cut(s) 133, 218
TfiI GAWTC 7 cut(s) 5, 160, 256, 262, 268, 382, 580
TscAI CASTG 2 cut(s) 352, 359
TseI GCWGC 4 cut(s) 245, 776, 794, 797
TspDTI ATGAA 1 cut(s) 714
TspGWI ACGGA 1 cut(s) 109
TspRI CASTG 2 cut(s) 352, 359
VpaK11BI GGWCC 2 cut(s) 314, 648
XagI CCTNNNNNAGG 1 cut(s) 828
XapI RAATTY 1 cut(s) 732
XcmI CCANNNNNNNNNTGG 1 cut(s) 558
XmaJI CCTAGG 1 cut(s) 317
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.