Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003822

Physical Location & Seq

Genomic Coordinates Reverse (-)

12034659 .. 12037723

Gene Structure 3065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00342870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGATCCAGCTGACATTAATCAACACGGGAGCCGGCTCTGGGCCATTGAGAACATTGCTCAGCCACCTCCCGGCTGGCAACGGCTACTCACGATTCAAGGTGCAGGAAGCACTAAGTTTGCGTGCCAACATGTATTTGATTGAACATCCTGAGTATATGGTGGATGGGCTATCTATGGCACAATTTTCATTTCAAATTCCAAGGCCTCTGCAGGAGAATTATGTGAGGAAACGCCCTGCCGCTTCTCGTTTGACAGCAGCTGCCCATGCCAGTAGAACTCTTGAACCTACTGAAGCAAATCCCATAGCAAGGGCTGGTCCAGATGATATAGAGTTGCTACTTGGTTCTCCGTACTTGGAGGCTCATGTGTTTGACCCTGTTGGTCGACCTACAAAGAAGCGAGCCAAAACAAGAACTCCATCAAGGGTCTCATTTAAATATCAGCACAGACTCGAGCTAGAAGGGCTTATGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008327 GO:0019899 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD zf-CW

Protein Analysis

158

Amino Acids

17.58

Weight (kDa)

9.84

Isoelectric Point (pI)

45.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35330 AT5G35330 AT5G35330 AT5G35330
fragaria_vesca	FvH4_4g06240 FvH4_4g06240 FvH4_4g06240 FvH4_4g06240 FvH4_4g06240
malus_domestica	MD13G1234700.v1.1 MD16G1239500.v1.1
prunus_persica	Prupe.1G065600_v2.0.a1 Prupe.1G065600_v2.0.a1
pyrus_communis	pycom16g20040
rosa_chinensis	RchiOBHm_Chr4g0397961
rosa_laevigata	RLG00000009392
rosa_multiflora	Rmu_co8227835.1_g000001 Rmu_co8419633.1_g000001 Rmu_sc0001074.1_g000002 Rmu_sc0001074.1_g000005 Rmu_sc0003773.1_g000027
rosa_roxburghii	Rroxscaffold_5G00342870 Rroxscaffold_5G00342930
rosa_rugosa	Rorug04G0004900 Rorug04G0005000
rosa_samantha	Rh4AG081200 Rh4AG081600 Rh4BG079200 Rh4CG088800 Rh4CG089100 Rh4DG074700
rosa_wichuraiana	Rw0G019360 Rw4G006770 Rw4G006790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	385
AciI	CCGC	1 cut(s)	240
AcsI	RAATTY	1 cut(s)	195
AcuI	CTGAAG	1 cut(s)	312
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	3 cut(s)	39, 70, 309
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	4 cut(s)	97, 143, 194, 284
AluBI	AGCT	3 cut(s)	10, 260, 457
AluI	AGCT	3 cut(s)	10, 260, 457
Alw26I	GTCTC	1 cut(s)	433
AlwNI	CAGNNNCTG	1 cut(s)	260
Ama87I	CYCGRG	1 cut(s)	452
AoxI	GGCC	2 cut(s)	41, 203
ApeKI	GCWGC	2 cut(s)	257, 260
ApoI	RAATTY	1 cut(s)	195
AseI	ATTAAT	1 cut(s)	17
AspS9I	GGNCC	2 cut(s)	41, 317
AsuC2I	CCSGG	1 cut(s)	71
AvaI	CYCGRG	1 cut(s)	452
AvaII	GGWCC	1 cut(s)	317
BbvI	GCAGC	2 cut(s)	247, 269
BccI	CCATC	2 cut(s)	158, 427
BceAI	ACGGC	1 cut(s)	97
BcnI	CCSGG	1 cut(s)	71
BcoDI	GTCTC	1 cut(s)	433
BfaI	CTAG	1 cut(s)	458
BfmI	CTRYAG	1 cut(s)	209
BisI	GCNGC	3 cut(s)	240, 258, 261
BlpI	GCTNAGC	1 cut(s)	59
BlsI	GCNGC	3 cut(s)	241, 259, 262
Bme1390I	CCNGG	1 cut(s)	71
Bme18I	GGWCC	1 cut(s)	317
BmeT110I	CYCGRG	1 cut(s)	452
BmgT120I	GGNCC	2 cut(s)	41, 317
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	71
Bpu1102I	GCTNAGC	1 cut(s)	59
BpuMI	CCSGG	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	433
BsaJI	CCNNGG	1 cut(s)	200
BsaXI	ACNNNNNCTCC	2 cut(s)	400, 430
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 70, 309
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	270
Bse3DI	GCAATG	1 cut(s)	53
BseDI	CCNNGG	1 cut(s)	200
BseGI	GGATG	2 cut(s)	145, 169
BseLI	CCNNNNNNNGG	3 cut(s)	39, 70, 309
BseMI	GCAATG	1 cut(s)	53
BseMII	CTCAG	2 cut(s)	73, 141
BseNI	ACTGG	1 cut(s)	270
BseXI	GCAGC	2 cut(s)	247, 269
BsgI	GTGCAG	1 cut(s)	122
BshFI	GGCC	2 cut(s)	43, 205
BsiHKCI	CYCGRG	1 cut(s)	452
BsiSI	CCGG	2 cut(s)	33, 71
BslI	CCNNNNNNNGG	3 cut(s)	39, 70, 309
BsmAI	GTCTC	1 cut(s)	433
BsnI	GGCC	2 cut(s)	43, 205
Bso31I	GGTCTC	1 cut(s)	433
BsoBI	CYCGRG	1 cut(s)	452
Bsp143I	GATC	1 cut(s)	3
Bsp1720I	GCTNAGC	1 cut(s)	59
BspACI	CCGC	1 cut(s)	240
BspANI	GGCC	2 cut(s)	43, 205
BspCNI	CTCAG	2 cut(s)	72, 142
BspHI	TCATGA	1 cut(s)	473
BspLI	GGNNCC	1 cut(s)	31
BspMAI	CTGCAG	1 cut(s)	213
BspTNI	GGTCTC	1 cut(s)	433
BsrDI	GCAATG	1 cut(s)	53
BsrFI	RCCGGY	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	270
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	1 cut(s)	3
BssT1I	CCWWGG	1 cut(s)	200
BstC8I	GCNNGC	4 cut(s)	34, 76, 123, 402
BstDEI	CTNAG	3 cut(s)	59, 113, 150
BstF5I	GGATG	2 cut(s)	145, 169
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	433
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 463
BstNSI	RCATGY	1 cut(s)	133
BstSCI	CCNGG	1 cut(s)	69
BstSFI	CTRYAG	1 cut(s)	209
BstV1I	GCAGC	2 cut(s)	247, 269
BsuRI	GGCC	2 cut(s)	43, 205
BtsCI	GGATG	2 cut(s)	145, 169
Cac8I	GCNNGC	4 cut(s)	34, 76, 123, 402
CaiI	CAGNNNCTG	1 cut(s)	260
CciI	TCATGA	1 cut(s)	473
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	2 cut(s)	41, 317
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	4 cut(s)	130, 266, 365, 474
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	3 cut(s)	59, 113, 150
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
DraI	TTTAAA	1 cut(s)	436
Eco130I	CCWWGG	1 cut(s)	200
Eco147I	AGGCCT	1 cut(s)	205
Eco31I	GGTCTC	1 cut(s)	433
Eco47I	GGWCC	1 cut(s)	317
Eco57I	CTGAAG	1 cut(s)	312
Eco88I	CYCGRG	1 cut(s)	452
EcoT14I	CCWWGG	1 cut(s)	200
ErhI	CCWWGG	1 cut(s)	200
FaeI	CATG	4 cut(s)	133, 269, 368, 477
FatI	CATG	4 cut(s)	129, 265, 364, 473
FblI	GTMKAC	1 cut(s)	385
Fnu4HI	GCNGC	3 cut(s)	240, 258, 261
FokI	GGATG	2 cut(s)	132, 176
Fsp4HI	GCNGC	3 cut(s)	240, 258, 261
FspBI	CTAG	1 cut(s)	458
GluI	GCNGC	3 cut(s)	240, 258, 261
HaeIII	GGCC	2 cut(s)	43, 205
HapII	CCGG	2 cut(s)	33, 71
Hin1II	CATG	4 cut(s)	133, 269, 368, 477
HincII	GTYRAC	1 cut(s)	386
HindII	GTYRAC	1 cut(s)	386
HinfI	GANTC	2 cut(s)	93, 450
HpaII	CCGG	2 cut(s)	33, 71
Hpy166II	GTNNAC	1 cut(s)	386
Hpy188III	TCNNGA	5 cut(s)	90, 149, 281, 320, 474
Hpy8I	GTNNAC	1 cut(s)	386
HpyAV	CCTTC	1 cut(s)	455
HpyCH4V	TGCA	2 cut(s)	103, 211
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 463
HpyF3I	CTNAG	3 cut(s)	59, 113, 150
Hsp92II	CATG	4 cut(s)	133, 269, 368, 477
KroI	GCCGGC	1 cut(s)	32
KroNI	GCCGGC	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	29
Lsp1109I	GCAGC	2 cut(s)	247, 269
MaeI	CTAG	1 cut(s)	458
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MluCI	AATT	3 cut(s)	182, 195, 217
MlyI	GAGTC	1 cut(s)	444
MnlI	CCTC	4 cut(s)	77, 216, 219, 352
MroNI	GCCGGC	1 cut(s)	32
MseI	TTAA	2 cut(s)	17, 435
MspA1I	CMGCKG	2 cut(s)	10, 260
MspI	CCGG	2 cut(s)	33, 71
MspR9I	CCNGG	1 cut(s)	71
MwoI	GCNNNNNNNGC	2 cut(s)	266, 463
NaeI	GCCGGC	1 cut(s)	34
NciI	CCSGG	1 cut(s)	71
NdeII	GATC	1 cut(s)	3
NgoMIV	GCCGGC	1 cut(s)	32
NlaIII	CATG	4 cut(s)	133, 269, 368, 477
NlaIV	GGNNCC	1 cut(s)	31
NspI	RCATGY	1 cut(s)	133
PaeR7I	CTCGAG	1 cut(s)	452
PagI	TCATGA	1 cut(s)	473
PceI	AGGCCT	1 cut(s)	205
PciI	ACATGT	1 cut(s)	129
PdiI	GCCGGC	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	93
PkrI	GCNGC	3 cut(s)	241, 259, 262
PleI	GAGTC	1 cut(s)	444
PpsI	GAGTC	1 cut(s)	444
PscI	ACATGT	1 cut(s)	129
PshBI	ATTAAT	1 cut(s)	17
PspN4I	GGNNCC	1 cut(s)	31
PspPI	GGNCC	2 cut(s)	41, 317
PspXI	VCTCGAGB	1 cut(s)	452
PstI	CTGCAG	1 cut(s)	213
PstNI	CAGNNNCTG	1 cut(s)	260
PvuII	CAGCTG	2 cut(s)	10, 260
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
SalI	GTCGAC	1 cut(s)	384
SaqAI	TTAA	2 cut(s)	17, 435
SatI	GCNGC	3 cut(s)	240, 258, 261
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	2 cut(s)	41, 317
SchI	GAGTC	1 cut(s)	444
ScrFI	CCNGG	1 cut(s)	71
SetI	ASST	7 cut(s)	12, 69, 102, 262, 289, 391, 459
SfcI	CTRYAG	1 cut(s)	209
Sfr274I	CTCGAG	1 cut(s)	452
SinI	GGWCC	1 cut(s)	317
SlaI	CTCGAG	1 cut(s)	452
SmiI	ATTTAAAT	1 cut(s)	436
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	3 cut(s)	182, 195, 217
SseBI	AGGCCT	1 cut(s)	205
SsiI	CCGC	1 cut(s)	240
SspMI	CTAG	1 cut(s)	458
StuI	AGGCCT	1 cut(s)	205
StyD4I	CCNGG	1 cut(s)	69
StyI	CCWWGG	1 cut(s)	200
SwaI	ATTTAAAT	1 cut(s)	436
TaqI	TCGA	2 cut(s)	385, 453
TasI	AATT	3 cut(s)	182, 195, 217
TauI	GCSGC	1 cut(s)	242
TfiI	GAWTC	1 cut(s)	93
Tru1I	TTAA	2 cut(s)	17, 435
Tru9I	TTAA	2 cut(s)	17, 435
TseI	GCWGC	2 cut(s)	257, 260
TspDTI	ATGAA	1 cut(s)	177
TspGWI	ACGGA	1 cut(s)	339
VpaK11BI	GGWCC	1 cut(s)	317
VspI	ATTAAT	1 cut(s)	17
XapI	RAATTY	1 cut(s)	195
XceI	RCATGY	1 cut(s)	133
XcmI	CCANNNNNNNNNTGG	1 cut(s)	71
XhoI	CTCGAG	1 cut(s)	452
XmiI	GTMKAC	1 cut(s)	385
XspI	CTAG	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.