MD16G1239500.v1.1

methyl-CpG-binding domain-containing protein 2-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
25396407 .. 25399330
2924 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1239500.v1.1.491

Sequence Viewer

Length: 1101 bp
ATGGATTCAAGAAATTTCTGTGCTGTTTCCATGGATTCTCGAAATCCCTGTAAGATAACGTTCAAGAAGCTCCGGAGGGAAGAAGAACAAAATACGCCTCCCCAAGACGCCATTGACGTCCCTCCATCTTCTTCTTCCACTTCGTCAGATTCGGATTCGGGTTCGGATGATGAAACCCTTCGAACCCATCTCCAATCGAACGAGCTGGTGCTGTATGACCCTGCAACTGCAGCCGCTAATGCCAATGCCGCAGACACAGTGCATGACAATGCCAAAACCCTCATTTCGTCTCCGTTTGATCGCCCGAACAATCCAATGTCGTTTCCATGGACATATCCGTTTAATCAGCCACCTAGGGTTTTGCCGTCGGTTGGGGCTTTCACTGTGCAGTGTGCTAATTGCTTCAAATGGAGGCTCATTCCATCGAAGGAGAAGTATGAGGAAATTCGTGAGCACATTCTGGAAGAGCCCTTTTACTGTGAAACTGCACGCGAATGGCGGGATTTGGTGTCTTGTGATGACCCGGAAGACATTACTCAGGATGGGAGCAGGCTCTGGGCCATTGATAAGCCCAACATTGCTCAGCCCCCGCCTGGTTGGCAGCGATTGCTCAGGATCAGAGGTGAAGGAGGCACCCGATTCGCAGACGTGTACTATGAATCGCCGACAGGCAAGAAGCTTCGTTCCTCGGTGGAGATCCAGAAGTATTTGCTTCAACATCCTGAGTATATGGATGCAGGAGTTAACATGTCACAGTTCTCATTTGTAACTCCGAAGCCTTTGCAGGAAAATTATGTGAGAAAGCGTTCTGACAATTACTCGAAGAAGCATCCTGCTCATTTGACAGACTCTGCTGAAACACCTAGACTTCTTGCACCTGGTGAAGAAATAAATCCAGTGGCATGGGTTGGTCTAGCTGACGGTCCAGAATTGCAACCTCGTCGGCTAGCACTCCCTCCTCCAGAAGCAAGGGAACCTCTGTTTGATCCCTCTGTTCGACCGACAAAGAAGCGAGCAACAAGAACTCCATCATCAAAGACTTACAAGGCAGATCCGAGCATTAGCACGGAGTCAAGTCCAGAAAGACCTGATCAATCTTGA

Protein Analysis

367

Amino Acids

41.3

Weight (kDa)

5.56

Isoelectric Point (pI)

69.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CW PF07496 128 - 178 2.4e-12 CW-type Zinc Finger
MBD PF01429 197 - 259 1.8e-12 Methyl-CpG binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 120
AccB1I GGYRCC 1 cut(s) 632
AccII CGCG 1 cut(s) 492
AccIII TCCGGA 1 cut(s) 72
AciI CCGC 4 cut(s) 234, 249, 499, 590
AclI AACGTT 1 cut(s) 59
AclWI GGATC 4 cut(s) 623, 691, 980, 1046
AcsI RAATTY 2 cut(s) 13, 444
AcyI GRCGYC 2 cut(s) 108, 117
AdeI CACNNNGTG 1 cut(s) 881
AfaI GTAC 1 cut(s) 653
AfiI CCNNNNNNNGG 2 cut(s) 371, 593
AflIII ACRYGT 2 cut(s) 648, 747
AgsI TTSAA 4 cut(s) 9, 64, 406, 716
AjiI CACGTC 1 cut(s) 649
AjnI CCWGG 2 cut(s) 592, 877
AluBI AGCT 4 cut(s) 70, 205, 679, 917
AluI AGCT 4 cut(s) 70, 205, 679, 917
Alw21I GWGCWC 1 cut(s) 456
Alw26I GTCTC 1 cut(s) 294
AlwI GGATC 4 cut(s) 623, 691, 980, 1046
AlwNI CAGNNNCTG 2 cut(s) 555, 851
Aor13HI TCCGGA 1 cut(s) 72
AoxI GGCC 1 cut(s) 558
ApeKI GCWGC 2 cut(s) 230, 601
ApoI RAATTY 2 cut(s) 13, 444
Asp700I GAANNNNTTC 2 cut(s) 177, 805
AspA2I CCTAGG 1 cut(s) 353
AspS9I GGNCC 2 cut(s) 558, 923
AsuC2I CCSGG 1 cut(s) 524
AsuHPI GGTGA 2 cut(s) 635, 893
AsuII TTCGAA 1 cut(s) 181
AsuNHI GCTAGC 1 cut(s) 946
AvaII GGWCC 1 cut(s) 923
AvrII CCTAGG 1 cut(s) 353
BanI GGYRCC 1 cut(s) 632
BanII GRGCYC 1 cut(s) 471
BbsI GAAGAC 1 cut(s) 534
Bbv12I GWGCWC 1 cut(s) 456
BbvI GCAGC 2 cut(s) 242, 613
BccI CCATC 5 cut(s) 133, 195, 430, 536, 1036
BceAI ACGGC 1 cut(s) 349
BcgI CGANNNNNNTGC 6 cut(s) 622, 656, 763, 797, 923, 957
BciT130I CCWGG 2 cut(s) 594, 879
BclI TGATCA 1 cut(s) 1090
BcnI CCSGG 1 cut(s) 524
BcoDI GTCTC 1 cut(s) 294
BfaI CTAG 4 cut(s) 354, 864, 914, 947
BfmI CTRYAG 1 cut(s) 228
BglI GCCNNNNNGGC 1 cut(s) 598
BisI GCNGC 4 cut(s) 231, 234, 249, 602
BlnI CCTAGG 1 cut(s) 353
BlpI GCTNAGC 1 cut(s) 582
BlsI GCNGC 4 cut(s) 232, 235, 250, 603
Bme1390I CCNGG 3 cut(s) 524, 594, 879
Bme18I GGWCC 1 cut(s) 923
BmgBI CACGTC 1 cut(s) 649
BmgT120I GGNCC 2 cut(s) 558, 923
BmiI GGNNCC 2 cut(s) 634, 975
BmrFI CCNGG 3 cut(s) 524, 594, 879
BmsI GCATC 2 cut(s) 724, 838
BmtI GCTAGC 1 cut(s) 950
BpiI GAAGAC 1 cut(s) 534
BpmI CTGGAG 1 cut(s) 945
Bpu10I CCTNAGC 1 cut(s) 611
Bpu1102I GCTNAGC 1 cut(s) 582
Bpu14I TTCGAA 1 cut(s) 181
BpuMI CCSGG 1 cut(s) 524
BsaHI GRCGYC 2 cut(s) 108, 117
BsaJI CCNNGG 4 cut(s) 30, 326, 353, 687
BsaWI WCCGGW 1 cut(s) 72
BsaXI ACNNNNNCTCC 2 cut(s) 1009, 1039
Bsc4I CCNNNNNNNGG 2 cut(s) 371, 593
Bse1I ACTGG 1 cut(s) 896
Bse3DI GCAATG 1 cut(s) 576
BseAI TCCGGA 1 cut(s) 72
BseBI CCWGG 2 cut(s) 594, 879
BseDI CCNNGG 4 cut(s) 30, 326, 353, 687
BseGI GGATG 5 cut(s) 172, 547, 718, 739, 829
BseLI CCNNNNNNNGG 2 cut(s) 371, 593
BseMI GCAATG 1 cut(s) 576
BseMII CTCAG 4 cut(s) 551, 596, 625, 714
BseNI ACTGG 1 cut(s) 896
BseRI GAGGAG 1 cut(s) 948
BseXI GCAGC 2 cut(s) 242, 613
BsgI GTGCAG 2 cut(s) 407, 471
Bsh1236I CGCG 1 cut(s) 492
Bsh1285I CGRYCG 1 cut(s) 1001
BshFI GGCC 1 cut(s) 560
BshNI GGYRCC 1 cut(s) 632
BsiEI CGRYCG 1 cut(s) 1001
BsiHKAI GWGCWC 1 cut(s) 456
BsiSI CCGG 2 cut(s) 73, 524
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 2 cut(s) 371, 593
BsmAI GTCTC 1 cut(s) 294
BsmBI CGTCTC 1 cut(s) 294
BsmFI GGGAC 1 cut(s) 104
BsnI GGCC 1 cut(s) 560
Bsp119I TTCGAA 1 cut(s) 181
Bsp1286I GDGCHC 2 cut(s) 456, 471
Bsp13I TCCGGA 1 cut(s) 72
Bsp143I GATC 6 cut(s) 298, 615, 696, 985, 1051, 1090
Bsp1720I GCTNAGC 1 cut(s) 582
Bsp19I CCATGG 2 cut(s) 30, 326
BspACI CCGC 4 cut(s) 234, 249, 499, 590
BspANI GGCC 1 cut(s) 560
BspCNI CTCAG 4 cut(s) 550, 595, 624, 715
BspEI TCCGGA 1 cut(s) 72
BspFNI CGCG 1 cut(s) 492
BspLI GGNNCC 2 cut(s) 634, 975
BspMAI CTGCAG 1 cut(s) 232
BspOI GCTAGC 1 cut(s) 950
BspPI GGATC 4 cut(s) 623, 691, 980, 1046
BspQI GCTCTTC 1 cut(s) 459
BspT104I TTCGAA 1 cut(s) 181
BspT107I GGYRCC 1 cut(s) 632
BsrDI GCAATG 1 cut(s) 576
BsrI ACTGG 1 cut(s) 896
BssECI CCNNGG 4 cut(s) 30, 326, 353, 687
BssMI GATC 6 cut(s) 298, 615, 696, 985, 1051, 1090
BssNI GRCGYC 2 cut(s) 108, 117
BssT1I CCWWGG 3 cut(s) 30, 326, 353
Bst2UI CCWGG 2 cut(s) 594, 879
Bst4CI ACNGT 5 cut(s) 259, 385, 479, 756, 923
Bst6I CTCTTC 1 cut(s) 459
BstACI GRCGYC 2 cut(s) 108, 117
BstAPI GCANNNNNTGC 1 cut(s) 607
BstBI TTCGAA 1 cut(s) 181
BstC8I GCNNGC 4 cut(s) 490, 551, 948, 1014
BstDEI CTNAG 4 cut(s) 537, 582, 611, 723
BstDSI CCRYGG 2 cut(s) 30, 326
BstF5I GGATG 5 cut(s) 172, 547, 718, 739, 829
BstFNI CGCG 1 cut(s) 492
BstKTI GATC 6 cut(s) 301, 618, 699, 988, 1054, 1093
BstMAI GTCTC 1 cut(s) 294
BstMBI GATC 6 cut(s) 298, 615, 696, 985, 1051, 1090
BstMCI CGRYCG 1 cut(s) 1001
BstMWI GCNNNNNNNGC 5 cut(s) 230, 239, 248, 598, 607
BstNI CCWGG 2 cut(s) 594, 879
BstNSI RCATGY 1 cut(s) 751
BstSCI CCNGG 3 cut(s) 522, 592, 877
BstSFI CTRYAG 1 cut(s) 228
BstUI CGCG 1 cut(s) 492
BstV1I GCAGC 2 cut(s) 242, 613
BstV2I GAAGAC 1 cut(s) 534
BstX2I RGATCY 2 cut(s) 696, 1051
BstXI CCANNNNNNTGG 1 cut(s) 903
BstYI RGATCY 2 cut(s) 696, 1051
BsuRI GGCC 1 cut(s) 560
BtgI CCRYGG 2 cut(s) 30, 326
BtrI CACGTC 1 cut(s) 649
BtsCI GGATG 5 cut(s) 172, 547, 718, 739, 829
BtsI GCAGTG 1 cut(s) 395
BtsIMutI CAGTG 4 cut(s) 264, 381, 395, 903
Cac8I GCNNGC 4 cut(s) 490, 551, 948, 1014
CaiI CAGNNNCTG 2 cut(s) 555, 851
Cfr13I GGNCC 2 cut(s) 558, 923
CseI GACGC 1 cut(s) 116
CsiI ACCWGGT 1 cut(s) 877
Csp6I GTAC 1 cut(s) 652
CviAII CATG 5 cut(s) 31, 263, 327, 748, 903
CviQI GTAC 1 cut(s) 652
DdeI CTNAG 4 cut(s) 537, 582, 611, 723
DpnI GATC 6 cut(s) 300, 617, 698, 987, 1053, 1092
DpnII GATC 6 cut(s) 298, 615, 696, 985, 1051, 1090
DraIII CACNNNGTG 1 cut(s) 881
Eam1104I CTCTTC 1 cut(s) 459
EarI CTCTTC 1 cut(s) 459
Eco130I CCWWGG 3 cut(s) 30, 326, 353
Eco24I GRGCYC 1 cut(s) 471
Eco47I GGWCC 1 cut(s) 923
EcoRII CCWGG 2 cut(s) 592, 877
EcoT14I CCWWGG 3 cut(s) 30, 326, 353
EcoT38I GRGCYC 1 cut(s) 471
ErhI CCWWGG 3 cut(s) 30, 326, 353
Esp3I CGTCTC 1 cut(s) 294
FaeI CATG 5 cut(s) 34, 266, 330, 751, 906
FaqI GGGAC 1 cut(s) 104
FatI CATG 5 cut(s) 30, 262, 326, 747, 902
FauI CCCGC 2 cut(s) 492, 597
FbaI TGATCA 1 cut(s) 1090
Fnu4HI GCNGC 4 cut(s) 231, 234, 249, 602
FokI GGATG 5 cut(s) 179, 554, 705, 746, 816
FriOI GRGCYC 1 cut(s) 471
Fsp4HI GCNGC 4 cut(s) 231, 234, 249, 602
FspBI CTAG 4 cut(s) 354, 864, 914, 947
GluI GCNGC 4 cut(s) 231, 234, 249, 602
GsuI CTGGAG 1 cut(s) 945
HaeIII GGCC 1 cut(s) 560
HapII CCGG 2 cut(s) 73, 524
HgaI GACGC 1 cut(s) 116
Hin1I GRCGYC 2 cut(s) 108, 117
Hin1II CATG 5 cut(s) 34, 266, 330, 751, 906
HincII GTYRAC 1 cut(s) 745
HindII GTYRAC 1 cut(s) 745
HindIII AAGCTT 1 cut(s) 677
HinfI GANTC 8 cut(s) 5, 35, 149, 155, 639, 659, 848, 1070
HpaI GTTAAC 1 cut(s) 745
HpaII CCGG 2 cut(s) 73, 524
HphI GGTGA 2 cut(s) 635, 893
Hpy166II GTNNAC 2 cut(s) 652, 745
Hpy188I TCNGA 7 cut(s) 148, 154, 166, 620, 774, 811, 1056
Hpy8I GTNNAC 2 cut(s) 652, 745
Hpy99I CGWCG 2 cut(s) 370, 945
HpyAV CCTTC 3 cut(s) 188, 421, 620
HpyCH4III ACNGT 5 cut(s) 259, 385, 479, 756, 923
HpyCH4IV ACGT 3 cut(s) 59, 117, 648
HpyCH4V TGCA 9 cut(s) 224, 230, 262, 388, 488, 737, 784, 875, 934
HpyF10VI GCNNNNNNNGC 5 cut(s) 230, 239, 248, 598, 607
HpyF3I CTNAG 4 cut(s) 537, 582, 611, 723
HpySE526I ACGT 3 cut(s) 59, 117, 648
Hsp92I GRCGYC 2 cut(s) 108, 117
Hsp92II CATG 5 cut(s) 34, 266, 330, 751, 906
Kpn2I TCCGGA 1 cut(s) 72
Ksp22I TGATCA 1 cut(s) 1090
KspAI GTTAAC 1 cut(s) 745
Kzo9I GATC 6 cut(s) 298, 615, 696, 985, 1051, 1090
LguI GCTCTTC 1 cut(s) 459
LmnI GCTCC 2 cut(s) 75, 546
Lsp1109I GCAGC 2 cut(s) 242, 613
LweI GCATC 2 cut(s) 724, 838
MabI ACCWGGT 1 cut(s) 877
MaeI CTAG 4 cut(s) 354, 864, 914, 947
MaeII ACGT 3 cut(s) 59, 117, 648
MaeIII GTNAC 2 cut(s) 750, 766
MalI GATC 6 cut(s) 300, 617, 698, 987, 1053, 1092
MboI GATC 6 cut(s) 298, 615, 696, 985, 1051, 1090
MboII GAAGA 9 cut(s) 92, 95, 120, 123, 126, 476, 539, 835, 896
MflI RGATCY 2 cut(s) 696, 1051
MhlI GDGCHC 2 cut(s) 456, 471
MluCI AATT 6 cut(s) 13, 397, 444, 790, 814, 929
MlyI GAGTC 2 cut(s) 842, 1079
MroI TCCGGA 1 cut(s) 72
MroXI GAANNNNTTC 2 cut(s) 177, 805
MseI TTAA 2 cut(s) 342, 744
MslI CAYNNNNRTG 2 cut(s) 267, 493
MspI CCGG 2 cut(s) 73, 524
MspR9I CCNGG 3 cut(s) 524, 594, 879
MvaI CCWGG 2 cut(s) 594, 879
MvnI CGCG 1 cut(s) 492
MwoI GCNNNNNNNGC 5 cut(s) 230, 239, 248, 598, 607
NciI CCSGG 1 cut(s) 524
NcoI CCATGG 2 cut(s) 30, 326
NdeII GATC 6 cut(s) 298, 615, 696, 985, 1051, 1090
NheI GCTAGC 1 cut(s) 946
NlaIII CATG 5 cut(s) 34, 266, 330, 751, 906
NlaIV GGNNCC 2 cut(s) 634, 975
NmuCI GTSAC 1 cut(s) 750
NspI RCATGY 1 cut(s) 751
NspV TTCGAA 1 cut(s) 181
PciI ACATGT 1 cut(s) 747
PciSI GCTCTTC 1 cut(s) 459
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PdmI GAANNNNTTC 2 cut(s) 177, 805
PfeI GAWTC 6 cut(s) 5, 35, 149, 155, 639, 659
PkrI GCNGC 4 cut(s) 232, 235, 250, 603
PleI GAGTC 2 cut(s) 842, 1078
PpsI GAGTC 2 cut(s) 842, 1078
PscI ACATGT 1 cut(s) 747
Psp1406I AACGTT 1 cut(s) 59
Psp6I CCWGG 2 cut(s) 592, 877
PspGI CCWGG 2 cut(s) 592, 877
PspN4I GGNNCC 2 cut(s) 634, 975
PspPI GGNCC 2 cut(s) 558, 923
PstI CTGCAG 1 cut(s) 232
PstNI CAGNNNCTG 2 cut(s) 555, 851
PsuI RGATCY 2 cut(s) 696, 1051
RsaI GTAC 1 cut(s) 653
RsaNI GTAC 1 cut(s) 652
RseI CAYNNNNRTG 2 cut(s) 267, 493
SapI GCTCTTC 1 cut(s) 459
SaqAI TTAA 2 cut(s) 342, 744
SatI GCNGC 4 cut(s) 231, 234, 249, 602
Sau3AI GATC 6 cut(s) 298, 615, 696, 985, 1051, 1090
Sau96I GGNCC 2 cut(s) 558, 923
SchI GAGTC 2 cut(s) 842, 1079
ScrFI CCNGG 3 cut(s) 524, 594, 879
SduI GDGCHC 2 cut(s) 456, 471
SexAI ACCWGGT 1 cut(s) 877
SfaNI GCATC 2 cut(s) 724, 838
SfcI CTRYAG 1 cut(s) 228
SfuI TTCGAA 1 cut(s) 181
SinI GGWCC 1 cut(s) 923
SmiMI CAYNNNNRTG 2 cut(s) 267, 493
Sse9I AATT 6 cut(s) 13, 397, 444, 790, 814, 929
SsiI CCGC 4 cut(s) 234, 249, 499, 590
SspMI CTAG 4 cut(s) 354, 864, 914, 947
StyD4I CCNGG 3 cut(s) 522, 592, 877
StyI CCWWGG 3 cut(s) 30, 326, 353
TaaI ACNGT 5 cut(s) 259, 385, 479, 756, 923
TaiI ACGT 3 cut(s) 62, 120, 651
TaqI TCGA 6 cut(s) 40, 181, 197, 425, 821, 997
TaqII GACCGA 1 cut(s) 1015
TasI AATT 6 cut(s) 13, 397, 444, 790, 814, 929
TatI WGTACW 1 cut(s) 651
TauI GCSGC 2 cut(s) 236, 251
TfiI GAWTC 6 cut(s) 5, 35, 149, 155, 639, 659
Tru1I TTAA 2 cut(s) 342, 744
Tru9I TTAA 2 cut(s) 342, 744
TscAI CASTG 4 cut(s) 264, 388, 395, 903
TseFI GTSAC 1 cut(s) 750
TseI GCWGC 2 cut(s) 230, 601
Tsp45I GTSAC 1 cut(s) 750
TspDTI ATGAA 2 cut(s) 186, 672
TspGWI ACGGA 3 cut(s) 282, 327, 1082
TspRI CASTG 4 cut(s) 264, 388, 395, 903
VpaK11BI GGWCC 1 cut(s) 923
XapI RAATTY 2 cut(s) 13, 444
XceI RCATGY 1 cut(s) 751
XmaJI CCTAGG 1 cut(s) 353
XmnI GAANNNNTTC 2 cut(s) 177, 805
XspI CTAG 4 cut(s) 354, 864, 914, 947
ZraI GACGTC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.