Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001074.1

Orthogroup ID

OG0003822

Physical Location & Seq

Genomic Coordinates Forward (+)

30010 .. 31502

Gene Structure 1493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001074.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atgaccactcacgattcaagttattatcaagctctgttgggcaagagacttcgatccatggtggaagtccaaaagtatttgattgaacatcctgagtatatggtggatggtctatctatggtggcacaattttcatttcaaattccaaagcctgtacaggagaaatatgtgaggaaacgccctgcggctcctcggttgacagcagctgcccatgccagtagaactcttgaacctactgaagcaaatcccatagcaagggctggtccagatgatatagagttgctacttggttctccgtacttggaggctcatgtgtttgaccctgttggtcgacctacaaagaagcgagccaaaacaagaactccatcaagggtctcatttaaatatcagcacagagtcaagctaaaagggcttatgtcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008327 GO:0019899 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD zf-CW

Protein Analysis

140

Amino Acids

15.89

Weight (kDa)

9.99

Isoelectric Point (pI)

49.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35330 AT5G35330 AT5G35330 AT5G35330
fragaria_vesca	FvH4_4g06240 FvH4_4g06240 FvH4_4g06240 FvH4_4g06240 FvH4_4g06240
malus_domestica	MD13G1234700.v1.1 MD16G1239500.v1.1
prunus_persica	Prupe.1G065600_v2.0.a1 Prupe.1G065600_v2.0.a1
pyrus_communis	pycom16g20040
rosa_chinensis	RchiOBHm_Chr4g0397961
rosa_laevigata	RLG00000009392
rosa_multiflora	Rmu_co8227835.1_g000001 Rmu_co8419633.1_g000001 Rmu_sc0001074.1_g000002 Rmu_sc0001074.1_g000005 Rmu_sc0003773.1_g000027
rosa_roxburghii	Rroxscaffold_5G00342870 Rroxscaffold_5G00342930
rosa_rugosa	Rorug04G0004900 Rorug04G0005000
rosa_samantha	Rh4AG081200 Rh4AG081600 Rh4BG079200 Rh4CG088800 Rh4CG089100 Rh4DG074700
rosa_wichuraiana	Rw0G019360 Rw4G006770 Rw4G006790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	331
AciI	CCGC	1 cut(s)	185
AclWI	GGATC	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	141
AcuI	CTGAAG	1 cut(s)	258
AfaI	GTAC	2 cut(s)	156, 299
AfiI	CCNNNNNNNGG	1 cut(s)	255
AgsI	TTSAA	4 cut(s)	18, 86, 140, 230
AluBI	AGCT	3 cut(s)	32, 206, 403
AluI	AGCT	3 cut(s)	32, 206, 403
Alw26I	GTCTC	2 cut(s)	40, 379
AlwI	GGATC	1 cut(s)	48
AlwNI	CAGNNNCTG	1 cut(s)	206
ApeKI	GCWGC	2 cut(s)	203, 206
ApoI	RAATTY	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	263
BbvI	GCAGC	2 cut(s)	193, 215
BccI	CCATC	2 cut(s)	101, 373
BcoDI	GTCTC	2 cut(s)	40, 379
BisI	GCNGC	3 cut(s)	186, 204, 207
BlsI	GCNGC	3 cut(s)	187, 205, 208
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	379
BsaJI	CCNNGG	2 cut(s)	57, 191
BsaXI	ACNNNNNCTCC	2 cut(s)	346, 376
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
Bse1I	ACTGG	1 cut(s)	216
BseDI	CCNNGG	2 cut(s)	57, 191
BseGI	GGATG	2 cut(s)	88, 112
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	1 cut(s)	216
BseRI	GAGGAG	1 cut(s)	180
BseXI	GCAGC	2 cut(s)	193, 215
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmAI	GTCTC	2 cut(s)	40, 379
Bso31I	GGTCTC	1 cut(s)	379
Bsp1407I	TGTACA	1 cut(s)	154
Bsp143I	GATC	1 cut(s)	53
Bsp19I	CCATGG	1 cut(s)	57
BspACI	CCGC	1 cut(s)	185
BspCNI	CTCAG	1 cut(s)	85
BspHI	TCATGA	1 cut(s)	419
BspLI	GGNNCC	1 cut(s)	189
BspPI	GGATC	1 cut(s)	48
BspTNI	GGTCTC	1 cut(s)	379
BsrGI	TGTACA	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	216
BssECI	CCNNGG	2 cut(s)	57, 191
BssMI	GATC	1 cut(s)	53
BssT1I	CCWWGG	1 cut(s)	57
BstAUI	TGTACA	1 cut(s)	154
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	1 cut(s)	93
BstDSI	CCRYGG	1 cut(s)	57
BstF5I	GGATG	2 cut(s)	88, 112
BstKTI	GATC	1 cut(s)	56
BstMAI	GTCTC	2 cut(s)	40, 379
BstMBI	GATC	1 cut(s)	53
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 409
BstV1I	GCAGC	2 cut(s)	193, 215
BtgI	CCRYGG	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	88, 112
Cac8I	GCNNGC	1 cut(s)	348
CaiI	CAGNNNCTG	1 cut(s)	206
CciI	TCATGA	1 cut(s)	419
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	2 cut(s)	155, 298
CviAII	CATG	4 cut(s)	58, 212, 311, 420
CviJI	RGCY	9 cut(s)	32, 151, 188, 206, 260, 308, 350, 403, 412
CviKI_1	RGCY	9 cut(s)	32, 151, 188, 206, 260, 308, 350, 403, 412
CviQI	GTAC	2 cut(s)	155, 298
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	1 cut(s)	55
DpnII	GATC	1 cut(s)	53
DraI	TTTAAA	1 cut(s)	382
Eco130I	CCWWGG	1 cut(s)	57
Eco31I	GGTCTC	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	4 cut(s)	61, 215, 314, 423
FatI	CATG	4 cut(s)	57, 211, 310, 419
FblI	GTMKAC	1 cut(s)	331
Fnu4HI	GCNGC	3 cut(s)	186, 204, 207
FokI	GGATG	2 cut(s)	75, 119
Fsp4HI	GCNGC	3 cut(s)	186, 204, 207
GluI	GCNGC	3 cut(s)	186, 204, 207
Hin1II	CATG	4 cut(s)	61, 215, 314, 423
HincII	GTYRAC	2 cut(s)	198, 332
HindII	GTYRAC	2 cut(s)	198, 332
HinfI	GANTC	2 cut(s)	14, 396
Hpy166II	GTNNAC	2 cut(s)	198, 332
Hpy188III	TCNNGA	5 cut(s)	11, 92, 227, 266, 420
Hpy8I	GTNNAC	2 cut(s)	198, 332
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 409
HpyF3I	CTNAG	1 cut(s)	93
Hsp92II	CATG	4 cut(s)	61, 215, 314, 423
Kzo9I	GATC	1 cut(s)	53
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	8 cut(s)	105, 143, 165, 195, 229, 246, 279, 336
Lsp1109I	GCAGC	2 cut(s)	193, 215
MalI	GATC	1 cut(s)	55
MboI	GATC	1 cut(s)	53
MluCI	AATT	2 cut(s)	128, 141
MlyI	GAGTC	1 cut(s)	405
MnlI	CCTC	3 cut(s)	165, 201, 298
MseI	TTAA	1 cut(s)	381
MspA1I	CMGCKG	1 cut(s)	206
MwoI	GCNNNNNNNGC	2 cut(s)	212, 409
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	1 cut(s)	53
NlaIII	CATG	4 cut(s)	61, 215, 314, 423
NlaIV	GGNNCC	1 cut(s)	189
PagI	TCATGA	1 cut(s)	419
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	3 cut(s)	187, 205, 208
PleI	GAGTC	1 cut(s)	404
PpsI	GAGTC	1 cut(s)	404
PspN4I	GGNNCC	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	263
PstNI	CAGNNNCTG	1 cut(s)	206
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	2 cut(s)	156, 299
RsaNI	GTAC	2 cut(s)	155, 298
SalI	GTCGAC	1 cut(s)	330
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	3 cut(s)	186, 204, 207
Sau3AI	GATC	1 cut(s)	53
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	1 cut(s)	405
SetI	ASST	5 cut(s)	34, 208, 235, 337, 405
SinI	GGWCC	1 cut(s)	263
SmiI	ATTTAAAT	1 cut(s)	382
Sse9I	AATT	2 cut(s)	128, 141
SsiI	CCGC	1 cut(s)	185
StyI	CCWWGG	1 cut(s)	57
SwaI	ATTTAAAT	1 cut(s)	382
TaqI	TCGA	2 cut(s)	52, 331
TasI	AATT	2 cut(s)	128, 141
TatI	WGTACW	1 cut(s)	154
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TseI	GCWGC	2 cut(s)	203, 206
TspDTI	ATGAA	1 cut(s)	123
TspGWI	ACGGA	1 cut(s)	285
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	1 cut(s)	141
XmiI	GTMKAC	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.