Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8419633.1

Orthogroup ID

OG0003822

Physical Location & Seq

Genomic Coordinates Reverse (-)

150 .. 1402

Gene Structure 1253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8419633.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

attactcaagacgggagccggctctgggccattgataggcccaacattgctcagccaccgcccggctggcaacggctactcaggattcgaggtgaaggaagcaccaagtttgcagatgtttattatcaagcgccgtcgggcaagagacttcggtccatggtggaggttcaaaagtatttgattgaacatcctgagtatatggtggatgggctatctatggcacaattttcatttcaaattccaaggcctctgcaggagaattatgtgaggaaacgccctgctgctcctcgtttgacagctgctgctcatgccagtagaactcttgaacctactgaagcaaatccgttagcatgggctggtccagatgatacagagttgcaacttggttctccgtacttggaagcacatgtgtttgaccctgttggtcgacctacaaagaagcgagccaaaacaagaactccatcaagggtctacaatagtaatttaaatatcagcacagagtcgagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008327 GO:0019899 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD zf-CW

Protein Analysis

169

Amino Acids

19.06

Weight (kDa)

9.73

Isoelectric Point (pI)

58.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35330 AT5G35330 AT5G35330 AT5G35330
fragaria_vesca	FvH4_4g06240 FvH4_4g06240 FvH4_4g06240 FvH4_4g06240 FvH4_4g06240
malus_domestica	MD13G1234700.v1.1 MD16G1239500.v1.1
prunus_persica	Prupe.1G065600_v2.0.a1 Prupe.1G065600_v2.0.a1
pyrus_communis	pycom16g20040
rosa_chinensis	RchiOBHm_Chr4g0397961
rosa_laevigata	RLG00000009392
rosa_multiflora	Rmu_co8227835.1_g000001 Rmu_co8419633.1_g000001 Rmu_sc0001074.1_g000002 Rmu_sc0001074.1_g000005 Rmu_sc0003773.1_g000027
rosa_roxburghii	Rroxscaffold_5G00342870 Rroxscaffold_5G00342930
rosa_rugosa	Rorug04G0004900 Rorug04G0005000
rosa_samantha	Rh4AG081200 Rh4AG081600 Rh4BG079200 Rh4CG088800 Rh4CG089100 Rh4DG074700
rosa_wichuraiana	Rw0G019360 Rw4G006770 Rw4G006790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	427, 471
AciI	CCGC	1 cut(s)	59
AcsI	RAATTY	1 cut(s)	237
AcuI	CTGAAG	1 cut(s)	354
AfaI	GTAC	1 cut(s)	395
AfiI	CCNNNNNNNGG	3 cut(s)	25, 36, 62
AflIII	ACRYGT	1 cut(s)	406
AgsI	TTSAA	4 cut(s)	170, 185, 236, 326
AluBI	AGCT	2 cut(s)	299, 507
AluI	AGCT	2 cut(s)	299, 507
Alw26I	GTCTC	1 cut(s)	139
AlwNI	CAGNNNCTG	1 cut(s)	302
AoxI	GGCC	3 cut(s)	27, 38, 245
ApeKI	GCWGC	3 cut(s)	281, 299, 302
ApoI	RAATTY	1 cut(s)	237
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	4 cut(s)	27, 39, 153, 359
AsuC2I	CCSGG	1 cut(s)	63
AsuHPI	GGTGA	1 cut(s)	104
AvaII	GGWCC	2 cut(s)	153, 359
BbvI	GCAGC	3 cut(s)	268, 286, 289
BccI	CCATC	2 cut(s)	200, 469
BceAI	ACGGC	2 cut(s)	89, 118
BcnI	CCSGG	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	139
BfaI	CTAG	1 cut(s)	508
BfmI	CTRYAG	1 cut(s)	251
BfoI	RGCGCY	1 cut(s)	134
BglI	GCCNNNNNGGC	1 cut(s)	67
BisI	GCNGC	3 cut(s)	282, 300, 303
BlpI	GCTNAGC	1 cut(s)	51
BlsI	GCNGC	3 cut(s)	283, 301, 304
Bme1390I	CCNGG	1 cut(s)	63
Bme18I	GGWCC	2 cut(s)	153, 359
BmgT120I	GGNCC	4 cut(s)	27, 39, 153, 359
BmiI	GGNNCC	1 cut(s)	17
BmrFI	CCNGG	1 cut(s)	63
BoxI	GACNNNNGTC	1 cut(s)	151
Bpu1102I	GCTNAGC	1 cut(s)	51
BpuMI	CCSGG	1 cut(s)	63
BsaJI	CCNNGG	2 cut(s)	156, 242
BsaXI	ACNNNNNCTCC	2 cut(s)	442, 472
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 36, 62
Bse118I	RCCGGY	1 cut(s)	18
Bse1I	ACTGG	1 cut(s)	312
Bse3DI	GCAATG	1 cut(s)	45
BseDI	CCNNGG	2 cut(s)	156, 242
BseGI	GGATG	2 cut(s)	187, 211
BseLI	CCNNNNNNNGG	3 cut(s)	25, 36, 62
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	3 cut(s)	65, 94, 183
BseNI	ACTGG	1 cut(s)	312
BseRI	GAGGAG	1 cut(s)	276
BseXI	GCAGC	3 cut(s)	268, 286, 289
BshFI	GGCC	3 cut(s)	29, 40, 247
BsiSI	CCGG	2 cut(s)	19, 63
BslI	CCNNNNNNNGG	3 cut(s)	25, 36, 62
BsmAI	GTCTC	1 cut(s)	139
BsnI	GGCC	3 cut(s)	29, 40, 247
Bsp1720I	GCTNAGC	1 cut(s)	51
Bsp19I	CCATGG	1 cut(s)	156
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	3 cut(s)	29, 40, 247
BspCNI	CTCAG	3 cut(s)	64, 93, 184
BspLI	GGNNCC	1 cut(s)	17
BspMAI	CTGCAG	1 cut(s)	255
BsrDI	GCAATG	1 cut(s)	45
BsrFI	RCCGGY	1 cut(s)	18
BsrI	ACTGG	1 cut(s)	312
BssAI	RCCGGY	1 cut(s)	18
BssECI	CCNNGG	2 cut(s)	156, 242
BssT1I	CCWWGG	2 cut(s)	156, 242
BstC8I	GCNNGC	3 cut(s)	20, 68, 444
BstDEI	CTNAG	3 cut(s)	51, 80, 192
BstDSI	CCRYGG	1 cut(s)	156
BstF5I	GGATG	2 cut(s)	187, 211
BstH2I	RGCGCY	1 cut(s)	134
BstHHI	GCGC	1 cut(s)	133
BstMAI	GTCTC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 308
BstNSI	RCATGY	1 cut(s)	410
BstPAI	GACNNNNGTC	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	61
BstSFI	CTRYAG	1 cut(s)	251
BstV1I	GCAGC	3 cut(s)	268, 286, 289
BsuRI	GGCC	3 cut(s)	29, 40, 247
BtgI	CCRYGG	1 cut(s)	156
BtsCI	GGATG	2 cut(s)	187, 211
Cac8I	GCNNGC	3 cut(s)	20, 68, 444
CaiI	CAGNNNCTG	1 cut(s)	302
CfoI	GCGC	1 cut(s)	133
Cfr10I	RCCGGY	1 cut(s)	18
Cfr13I	GGNCC	4 cut(s)	27, 39, 153, 359
Csp6I	GTAC	1 cut(s)	394
CviAII	CATG	4 cut(s)	157, 308, 351, 407
CviQI	GTAC	1 cut(s)	394
DdeI	CTNAG	3 cut(s)	51, 80, 192
DraI	TTTAAA	1 cut(s)	486
Eco130I	CCWWGG	2 cut(s)	156, 242
Eco147I	AGGCCT	1 cut(s)	247
Eco47I	GGWCC	2 cut(s)	153, 359
Eco57I	CTGAAG	1 cut(s)	354
EcoT14I	CCWWGG	2 cut(s)	156, 242
ErhI	CCWWGG	2 cut(s)	156, 242
FaeI	CATG	4 cut(s)	160, 311, 354, 410
FaiI	YATR	8 cut(s)	158, 198, 200, 218, 264, 309, 352, 408
FatI	CATG	4 cut(s)	156, 307, 350, 406
FblI	GTMKAC	2 cut(s)	427, 471
Fnu4HI	GCNGC	3 cut(s)	282, 300, 303
FokI	GGATG	2 cut(s)	174, 218
Fsp4HI	GCNGC	3 cut(s)	282, 300, 303
FspBI	CTAG	1 cut(s)	508
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	3 cut(s)	282, 300, 303
HaeII	RGCGCY	1 cut(s)	134
HaeIII	GGCC	3 cut(s)	29, 40, 247
HapII	CCGG	2 cut(s)	19, 63
HhaI	GCGC	1 cut(s)	133
Hin1II	CATG	4 cut(s)	160, 311, 354, 410
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HincII	GTYRAC	1 cut(s)	428
HindII	GTYRAC	1 cut(s)	428
HinfI	GANTC	2 cut(s)	85, 500
HpaII	CCGG	2 cut(s)	19, 63
HphI	GGTGA	1 cut(s)	104
Hpy166II	GTNNAC	2 cut(s)	428, 472
Hpy188III	TCNNGA	5 cut(s)	8, 82, 191, 323, 362
Hpy8I	GTNNAC	2 cut(s)	428, 472
Hpy99I	CGWCG	1 cut(s)	139
HpyAV	CCTTC	1 cut(s)	89
HpyCH4V	TGCA	3 cut(s)	113, 253, 379
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 308
HpyF3I	CTNAG	3 cut(s)	51, 80, 192
Hsp92II	CATG	4 cut(s)	160, 311, 354, 410
HspAI	GCGC	1 cut(s)	131
KroI	GCCGGC	1 cut(s)	18
KroNI	GCCGGC	1 cut(s)	20
LmnI	GCTCC	2 cut(s)	15, 289
Lsp1109I	GCAGC	3 cut(s)	268, 286, 289
MaeI	CTAG	1 cut(s)	508
MluCI	AATT	4 cut(s)	224, 237, 259, 481
MlyI	GAGTC	1 cut(s)	509
MnlI	CCTC	5 cut(s)	83, 157, 258, 261, 297
MroNI	GCCGGC	1 cut(s)	18
MseI	TTAA	1 cut(s)	485
MspA1I	CMGCKG	1 cut(s)	299
MspI	CCGG	2 cut(s)	19, 63
MspR9I	CCNGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	2 cut(s)	67, 308
NaeI	GCCGGC	1 cut(s)	20
NciI	CCSGG	1 cut(s)	63
NcoI	CCATGG	1 cut(s)	156
NgoMIV	GCCGGC	1 cut(s)	18
NlaIII	CATG	4 cut(s)	160, 311, 354, 410
NlaIV	GGNNCC	1 cut(s)	17
NspI	RCATGY	1 cut(s)	410
PceI	AGGCCT	1 cut(s)	247
PciI	ACATGT	1 cut(s)	406
PdiI	GCCGGC	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	85
PkrI	GCNGC	3 cut(s)	283, 301, 304
PleI	GAGTC	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	508
PscI	ACATGT	1 cut(s)	406
PshAI	GACNNNNGTC	1 cut(s)	151
PspN4I	GGNNCC	1 cut(s)	17
PspPI	GGNCC	4 cut(s)	27, 39, 153, 359
PstI	CTGCAG	1 cut(s)	255
PstNI	CAGNNNCTG	1 cut(s)	302
PvuII	CAGCTG	1 cut(s)	299
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
SalI	GTCGAC	1 cut(s)	426
SaqAI	TTAA	1 cut(s)	485
SatI	GCNGC	3 cut(s)	282, 300, 303
Sau96I	GGNCC	4 cut(s)	27, 39, 153, 359
SchI	GAGTC	1 cut(s)	509
ScrFI	CCNGG	1 cut(s)	63
SetI	ASST	6 cut(s)	94, 168, 301, 331, 433, 509
SfcI	CTRYAG	1 cut(s)	251
SinI	GGWCC	2 cut(s)	153, 359
SmiI	ATTTAAAT	1 cut(s)	486
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
Sse9I	AATT	4 cut(s)	224, 237, 259, 481
SseBI	AGGCCT	1 cut(s)	247
SsiI	CCGC	1 cut(s)	59
SspMI	CTAG	1 cut(s)	508
StuI	AGGCCT	1 cut(s)	247
StyD4I	CCNGG	1 cut(s)	61
StyI	CCWWGG	2 cut(s)	156, 242
SwaI	ATTTAAAT	1 cut(s)	486
TaqI	TCGA	3 cut(s)	88, 427, 503
TaqII	GACCGA	1 cut(s)	141
TasI	AATT	4 cut(s)	224, 237, 259, 481
TfiI	GAWTC	1 cut(s)	85
Tru1I	TTAA	1 cut(s)	485
Tru9I	TTAA	1 cut(s)	485
TseI	GCWGC	3 cut(s)	281, 299, 302
TspDTI	ATGAA	1 cut(s)	219
TspGWI	ACGGA	2 cut(s)	333, 381
VpaK11BI	GGWCC	2 cut(s)	153, 359
XapI	RAATTY	1 cut(s)	237
XceI	RCATGY	1 cut(s)	410
XcmI	CCANNNNNNNNNTGG	1 cut(s)	63
XmiI	GTMKAC	2 cut(s)	427, 471
XspI	CTAG	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.