Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0003822

Physical Location & Seq

Genomic Coordinates Reverse (-)

23527402 .. 23527866

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1234700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGATTCTCGGAATTTCTGTGTTGTTTCCATGGATTTTCGAAATCCATGCAAGATAACGTTCAAGAAGCTCACAAGAGAAGAAGAAAAAAATACGCCCCCTCAATATGCCATTGACGTCTCTCTATCTTCCTTTTGCTCTTTCTCAGGTTCGGATGATGAAACCCTTCAAACCCATATCCAACCGAACAAGCTGGCGTTGTATCACCCTGCAACTGCAGCAGCCCATGCCAATTCCGCGGCCATAGTGCATAACAATGCCAACACCCTCATTTCGTCTCTGTTTGATCACCTGAACAATCCGGTGTCATTTCCATGGACATATCCGTTTAATCATCCACCTAGAGTTTTGCCGTCTGTTGGCATTTTCATTGTGCAGTGTGCCAATTGCTTCAAATGGAGGCTCATTCCGTCGAAGGAGAAGTACGAGGAAATTCGGGAGCACATTCTGGAAGTGCCATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008327 GO:0019899 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD zf-CW

Protein Analysis

155

Amino Acids

17.55

Weight (kDa)

6.64

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CW	PF07496	124 - 147	6.1e-07	CW-type Zinc Finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35330 AT5G35330 AT5G35330 AT5G35330
fragaria_vesca	FvH4_4g06240 FvH4_4g06240 FvH4_4g06240 FvH4_4g06240 FvH4_4g06240
malus_domestica	MD13G1234700.v1.1 MD16G1239500.v1.1
prunus_persica	Prupe.1G065600_v2.0.a1 Prupe.1G065600_v2.0.a1
pyrus_communis	pycom16g20040
rosa_chinensis	RchiOBHm_Chr4g0397961
rosa_laevigata	RLG00000009392
rosa_multiflora	Rmu_co8227835.1_g000001 Rmu_co8419633.1_g000001 Rmu_sc0001074.1_g000002 Rmu_sc0001074.1_g000005 Rmu_sc0003773.1_g000027
rosa_roxburghii	Rroxscaffold_5G00342870 Rroxscaffold_5G00342930
rosa_rugosa	Rorug04G0004900 Rorug04G0005000
rosa_samantha	Rh4AG081200 Rh4AG081600 Rh4BG079200 Rh4CG088800 Rh4CG089100 Rh4DG074700
rosa_wichuraiana	Rw0G019360 Rw4G006770 Rw4G006790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	120
AccII	CGCG	1 cut(s)	239
AciI	CCGC	2 cut(s)	237, 239
AclI	AACGTT	1 cut(s)	59
AcoI	YGGCCR	1 cut(s)	240
AcsI	RAATTY	2 cut(s)	13, 432
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	1 cut(s)	359
AgsI	TTSAA	3 cut(s)	64, 170, 394
AluBI	AGCT	2 cut(s)	70, 193
AluI	AGCT	2 cut(s)	70, 193
Alw21I	GWGCWC	1 cut(s)	444
Alw26I	GTCTC	2 cut(s)	124, 282
AoxI	GGCC	1 cut(s)	240
ApeKI	GCWGC	2 cut(s)	218, 221
ApoI	RAATTY	2 cut(s)	13, 432
Asp700I	GAANNNNTTC	1 cut(s)	165
AsuHPI	GGTGA	2 cut(s)	197, 281
AsuII	TTCGAA	1 cut(s)	40
BarI	GAAGNNNNNNTAC	2 cut(s)	407, 439
Bbv12I	GWGCWC	1 cut(s)	444
BbvI	GCAGC	2 cut(s)	230, 233
BceAI	ACGGC	1 cut(s)	337
BcgI	CGANNNNNNTGC	2 cut(s)	30, 64
BclI	TGATCA	1 cut(s)	286
BcoDI	GTCTC	2 cut(s)	124, 282
BfaI	CTAG	1 cut(s)	342
BfmI	CTRYAG	1 cut(s)	216
BisI	GCNGC	3 cut(s)	219, 222, 240
BlsI	GCNGC	3 cut(s)	220, 223, 241
Bpu14I	TTCGAA	1 cut(s)	40
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	3 cut(s)	30, 237, 314
BsaWI	WCCGGW	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	1 cut(s)	359
BseDI	CCNNGG	3 cut(s)	30, 237, 314
BseGI	GGATG	2 cut(s)	160, 334
BseLI	CCNNNNNNNGG	1 cut(s)	359
BseMII	CTCAG	1 cut(s)	159
BseXI	GCAGC	2 cut(s)	230, 233
BsgI	GTGCAG	1 cut(s)	395
Bsh1236I	CGCG	1 cut(s)	239
BshFI	GGCC	1 cut(s)	242
BsiHKAI	GWGCWC	1 cut(s)	444
BsiSI	CCGG	1 cut(s)	302
BslI	CCNNNNNNNGG	1 cut(s)	359
BsmAI	GTCTC	2 cut(s)	124, 282
BsmBI	CGTCTC	2 cut(s)	124, 282
BsnI	GGCC	1 cut(s)	242
Bsp119I	TTCGAA	1 cut(s)	40
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp143I	GATC	1 cut(s)	286
Bsp19I	CCATGG	2 cut(s)	30, 314
BspACI	CCGC	2 cut(s)	237, 239
BspANI	GGCC	1 cut(s)	242
BspCNI	CTCAG	1 cut(s)	158
BspFNI	CGCG	1 cut(s)	239
BspMAI	CTGCAG	1 cut(s)	220
BspT104I	TTCGAA	1 cut(s)	40
BssECI	CCNNGG	3 cut(s)	30, 237, 314
BssMI	GATC	1 cut(s)	286
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	2 cut(s)	30, 314
BstACI	GRCGYC	1 cut(s)	117
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstBI	TTCGAA	1 cut(s)	40
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	1 cut(s)	145
BstDSI	CCRYGG	3 cut(s)	30, 237, 314
BstF5I	GGATG	2 cut(s)	160, 334
BstFNI	CGCG	1 cut(s)	239
BstKTI	GATC	1 cut(s)	289
BstMAI	GTCTC	2 cut(s)	124, 282
BstMBI	GATC	1 cut(s)	286
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 227, 236
BstSFI	CTRYAG	1 cut(s)	216
BstUI	CGCG	1 cut(s)	239
BstV1I	GCAGC	2 cut(s)	230, 233
BsuRI	GGCC	1 cut(s)	242
BtgI	CCRYGG	3 cut(s)	30, 237, 314
BtsCI	GGATG	2 cut(s)	160, 334
BtsI	GCAGTG	1 cut(s)	383
BtsIMutI	CAGTG	1 cut(s)	383
Cac8I	GCNNGC	1 cut(s)	195
Cfr42I	CCGCGG	1 cut(s)	240
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	4 cut(s)	31, 48, 227, 315
CviJI	RGCY	5 cut(s)	70, 193, 224, 242, 403
CviKI_1	RGCY	5 cut(s)	70, 193, 224, 242, 403
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	1 cut(s)	145
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
EaeI	YGGCCR	1 cut(s)	240
Eco130I	CCWWGG	2 cut(s)	30, 314
EcoT14I	CCWWGG	2 cut(s)	30, 314
ErhI	CCWWGG	2 cut(s)	30, 314
Esp3I	CGTCTC	2 cut(s)	124, 282
FaeI	CATG	4 cut(s)	34, 51, 230, 318
FaiI	YATR	9 cut(s)	32, 49, 108, 177, 228, 245, 252, 316, 322
FatI	CATG	4 cut(s)	30, 47, 226, 314
FbaI	TGATCA	1 cut(s)	286
Fnu4HI	GCNGC	3 cut(s)	219, 222, 240
FokI	GGATG	2 cut(s)	167, 321
Fsp4HI	GCNGC	3 cut(s)	219, 222, 240
FspBI	CTAG	1 cut(s)	342
GluI	GCNGC	3 cut(s)	219, 222, 240
HaeIII	GGCC	1 cut(s)	242
HapII	CCGG	1 cut(s)	302
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	4 cut(s)	34, 51, 230, 318
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	1 cut(s)	302
HphI	GGTGA	2 cut(s)	197, 281
Hpy188I	TCNGA	2 cut(s)	12, 154
Hpy188III	TCNNGA	3 cut(s)	64, 437, 449
Hpy99I	CGWCG	1 cut(s)	415
HpyAV	CCTTC	2 cut(s)	176, 409
HpyCH4IV	ACGT	2 cut(s)	59, 117
HpyCH4V	TGCA	5 cut(s)	51, 212, 218, 250, 376
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 227, 236
HpyF3I	CTNAG	1 cut(s)	145
HpySE526I	ACGT	2 cut(s)	59, 117
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	4 cut(s)	34, 51, 230, 318
Ksp22I	TGATCA	1 cut(s)	286
KspI	CCGCGG	1 cut(s)	240
Kzo9I	GATC	1 cut(s)	286
LmnI	GCTCC	1 cut(s)	439
LpnPI	CCDG	6 cut(s)	132, 179, 222, 305, 315, 434
Lsp1109I	GCAGC	2 cut(s)	230, 233
MaeI	CTAG	1 cut(s)	342
MaeII	ACGT	2 cut(s)	59, 117
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	3 cut(s)	92, 95, 120
MfeI	CAATTG	1 cut(s)	385
MhlI	GDGCHC	1 cut(s)	444
MluCI	AATT	4 cut(s)	13, 232, 385, 432
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	4 cut(s)	111, 278, 393, 421
MroXI	GAANNNNTTC	1 cut(s)	165
MseI	TTAA	1 cut(s)	330
MslI	CAYNNNNRTG	2 cut(s)	255, 313
MspA1I	CMGCKG	1 cut(s)	239
MspI	CCGG	1 cut(s)	302
MunI	CAATTG	1 cut(s)	385
MvnI	CGCG	1 cut(s)	239
MwoI	GCNNNNNNNGC	3 cut(s)	218, 227, 236
NcoI	CCATGG	2 cut(s)	30, 314
NdeII	GATC	1 cut(s)	286
NlaIII	CATG	4 cut(s)	34, 51, 230, 318
NspV	TTCGAA	1 cut(s)	40
PdmI	GAANNNNTTC	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	3 cut(s)	220, 223, 241
Psp1406I	AACGTT	1 cut(s)	59
PstI	CTGCAG	1 cut(s)	220
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	2 cut(s)	255, 313
SacII	CCGCGG	1 cut(s)	240
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	3 cut(s)	219, 222, 240
Sau3AI	GATC	1 cut(s)	286
SduI	GDGCHC	1 cut(s)	444
SetI	ASST	7 cut(s)	62, 72, 120, 151, 195, 294, 343
SfcI	CTRYAG	1 cut(s)	216
Sfr303I	CCGCGG	1 cut(s)	240
SfuI	TTCGAA	1 cut(s)	40
SgrBI	CCGCGG	1 cut(s)	240
SmiMI	CAYNNNNRTG	2 cut(s)	255, 313
Sse9I	AATT	4 cut(s)	13, 232, 385, 432
SsiI	CCGC	2 cut(s)	237, 239
SspMI	CTAG	1 cut(s)	342
StyI	CCWWGG	2 cut(s)	30, 314
TaiI	ACGT	2 cut(s)	62, 120
TaqI	TCGA	2 cut(s)	40, 413
TasI	AATT	4 cut(s)	13, 232, 385, 432
TauI	GCSGC	1 cut(s)	242
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	1 cut(s)	383
TseI	GCWGC	2 cut(s)	218, 221
TspDTI	ATGAA	2 cut(s)	174, 358
TspGWI	ACGGA	2 cut(s)	315, 399
TspRI	CASTG	1 cut(s)	383
XapI	RAATTY	2 cut(s)	13, 432
XmnI	GAANNNNTTC	1 cut(s)	165
XspI	CTAG	1 cut(s)	342
ZraI	GACGTC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.