Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003822

Physical Location & Seq

Genomic Coordinates Reverse (-)

4695534 .. 4698407

Gene Structure 2874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G065600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGATTCTCGAAATCCCACCAAAATAACATTCAAGCTGAGGAGGGAAGAAAAAAACAGCTTTACCCAAGAAGACATACATGTCCCTTCAGCTTCATCTTTATCTTCATCTTCCTCATCATCTTCATCGTCATCTGATTCAGACAATGAAATAATTGAAGCCCATTTTAATTCTCATCAGCTGGTGCTCTATGACCCTGCAACAGCCAAGGCTAATGCTAATGCTGTAGCTACAGTGCATGAGAAAGTGAACAGGCCCAATCCTTTTCCATTTCATCGTCCACCTAGGGTTTTGCCATCTGTTGGGGCCTTCACTGTGCAGTGTGCCAGCTGCTTCAAATGGAGGCTCATCCCAACAAAGGAAAAGTATGAAGAGATTCGTGAACACATTCTGGAGCAGCCCTTTTACTGCGCAACGGCACGGGAATGGCGGGATTTTGTTTCTTGTGATGACCCAGAAGACATTACTCAAGATGGAAGTAGGCTCTGGGCAATTGATAAGCCCAACATTGCTCAGCCCCCACCCGGCTGGCAACGCTTGCTGAGGATTAGAGGTGAAGGAGGCACCAGATTTGCAGACGTGTACTATGAATCACCATCAGGCAAGAAACTTCGATCATCGGTGGAGATCCAAAAGTATTTGCTTCAACATCCTGAGTATCTGGATGCGGGGGTTACTATGTCACAATTCTCGTTTCAAACTCCAAAGCCTTTGCAGGAAGATTATGTGAGGAAGCGTCCTGATAATTATGTGAAGAAGCGTCCTGCTCACTTGACAGCTTCTTCTGCTGCCAAGAGACTTCTTGAACCTGGTGCAGAAGTAAGTCCCATAGCATGGGTTGGTCCAGATGACTCCCCAGACTTGCAACTTGGTAGGCCAGCATGCTCTCCATACTCACAGGCACCTCTGTTTGATCCTTTTGTTCGACCAACAAAGAAACGAGCAACAAGAATTCCATCAAAGATTTACAGGGCTAATGCATATAGTAGCACAGAGTCAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008327 GO:0019899 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD zf-CW

Protein Analysis

335

Amino Acids

37.75

Weight (kDa)

8.95

Isoelectric Point (pI)

68.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35330 AT5G35330 AT5G35330 AT5G35330
fragaria_vesca	FvH4_4g06240 FvH4_4g06240 FvH4_4g06240 FvH4_4g06240 FvH4_4g06240
malus_domestica	MD13G1234700.v1.1 MD16G1239500.v1.1
prunus_persica	Prupe.1G065600_v2.0.a1 Prupe.1G065600_v2.0.a1
pyrus_communis	pycom16g20040
rosa_chinensis	RchiOBHm_Chr4g0397961
rosa_laevigata	RLG00000009392
rosa_multiflora	Rmu_co8227835.1_g000001 Rmu_co8419633.1_g000001 Rmu_sc0001074.1_g000002 Rmu_sc0001074.1_g000005 Rmu_sc0003773.1_g000027
rosa_roxburghii	Rroxscaffold_5G00342870 Rroxscaffold_5G00342930
rosa_rugosa	Rorug04G0004900 Rorug04G0005000
rosa_samantha	Rh4AG081200 Rh4AG081600 Rh4BG079200 Rh4CG088800 Rh4CG089100 Rh4DG074700
rosa_wichuraiana	Rw0G019360 Rw4G006770 Rw4G006790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	80
Acc16I	TGCGCA	1 cut(s)	412
AccB1I	GGYRCC	2 cut(s)	563, 901
AccB7I	CCANNNNNTGG	2 cut(s)	302, 834
AciI	CCGC	2 cut(s)	430, 668
AclWI	GGATC	2 cut(s)	622, 908
AcsI	RAATTY	1 cut(s)	951
AcuI	CTGAAG	1 cut(s)	72
AfaI	GTAC	1 cut(s)	584
AfiI	CCNNNNNNNGG	4 cut(s)	302, 358, 524, 834
AflIII	ACRYGT	2 cut(s)	79, 579
AgsI	TTSAA	6 cut(s)	34, 158, 337, 647, 698, 806
AjiI	CACGTC	1 cut(s)	580
AjnI	CCWGG	1 cut(s)	808
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AluBI	AGCT	7 cut(s)	37, 60, 92, 181, 230, 330, 779
AluI	AGCT	7 cut(s)	37, 60, 92, 181, 230, 330, 779
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	1 cut(s)	790
AlwI	GGATC	2 cut(s)	622, 908
AoxI	GGCC	3 cut(s)	254, 306, 875
ApeKI	GCWGC	3 cut(s)	330, 397, 788
ApoI	RAATTY	1 cut(s)	951
Asp700I	GAANNNNTTC	2 cut(s)	375, 387
AspA2I	CCTAGG	1 cut(s)	284
AspLEI	GCGC	1 cut(s)	413
AspS9I	GGNCC	3 cut(s)	255, 306, 842
AsuC2I	CCSGG	1 cut(s)	525
AsuHPI	GGTGA	2 cut(s)	566, 585
AvaII	GGWCC	1 cut(s)	842
AvrII	CCTAGG	1 cut(s)	284
BanI	GGYRCC	2 cut(s)	563, 901
BbsI	GAAGAC	2 cut(s)	78, 465
Bbv12I	GWGCWC	1 cut(s)	189
BbvCI	CCTCAGC	2 cut(s)	38, 542
BbvI	GCAGC	3 cut(s)	317, 409, 775
BccI	CCATC	4 cut(s)	304, 467, 604, 964
BceAI	ACGGC	1 cut(s)	432
BciT130I	CCWGG	1 cut(s)	810
BcnI	CCSGG	1 cut(s)	525
BcoDI	GTCTC	1 cut(s)	790
BfaI	CTAG	1 cut(s)	285
BfmI	CTRYAG	2 cut(s)	225, 231
BisI	GCNGC	3 cut(s)	331, 398, 789
BlnI	CCTAGG	1 cut(s)	284
BlpI	GCTNAGC	1 cut(s)	513
BlsI	GCNGC	3 cut(s)	332, 399, 790
Bme1390I	CCNGG	2 cut(s)	525, 810
Bme18I	GGWCC	1 cut(s)	842
BmgBI	CACGTC	1 cut(s)	580
BmgT120I	GGNCC	3 cut(s)	255, 306, 842
BmiI	GGNNCC	3 cut(s)	307, 565, 903
BmrFI	CCNGG	2 cut(s)	525, 810
BmsI	GCATC	1 cut(s)	655
BpiI	GAAGAC	2 cut(s)	78, 465
BpmI	CTGGAG	1 cut(s)	413
Bpu10I	CCTNAGC	2 cut(s)	38, 542
Bpu1102I	GCTNAGC	1 cut(s)	513
BpuEI	CTTGAG	1 cut(s)	453
BpuMI	CCSGG	1 cut(s)	525
BsaJI	CCNNGG	2 cut(s)	207, 284
Bsc4I	CCNNNNNNNGG	4 cut(s)	302, 358, 524, 834
Bse3DI	GCAATG	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	810
BseDI	CCNNGG	2 cut(s)	207, 284
BseGI	GGATG	3 cut(s)	348, 649, 670
BseLI	CCNNNNNNNGG	4 cut(s)	302, 358, 524, 834
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	4 cut(s)	29, 527, 533, 645
BseRI	GAGGAG	1 cut(s)	55
BseXI	GCAGC	3 cut(s)	317, 409, 775
BsgI	GTGCAG	2 cut(s)	338, 834
BshFI	GGCC	3 cut(s)	256, 308, 877
BshNI	GGYRCC	2 cut(s)	563, 901
BsiHKAI	GWGCWC	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	525
BslFI	GGGAC	2 cut(s)	68, 810
BslI	CCNNNNNNNGG	4 cut(s)	302, 358, 524, 834
BsmAI	GTCTC	1 cut(s)	790
BsmFI	GGGAC	2 cut(s)	68, 810
BsnI	GGCC	3 cut(s)	256, 308, 877
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	3 cut(s)	614, 627, 913
Bsp1720I	GCTNAGC	1 cut(s)	513
BspACI	CCGC	2 cut(s)	430, 668
BspANI	GGCC	3 cut(s)	256, 308, 877
BspCNI	CTCAG	4 cut(s)	30, 526, 534, 646
BspLI	GGNNCC	3 cut(s)	307, 565, 903
BspPI	GGATC	2 cut(s)	622, 908
BspT107I	GGYRCC	2 cut(s)	563, 901
BsrDI	GCAATG	1 cut(s)	507
BssECI	CCNNGG	2 cut(s)	207, 284
BssMI	GATC	3 cut(s)	614, 627, 913
BssT1I	CCWWGG	2 cut(s)	207, 284
Bst2UI	CCWGG	1 cut(s)	810
Bst4CI	ACNGT	2 cut(s)	235, 316
Bst6I	CTCTTC	1 cut(s)	366
BstAPI	GCANNNNNTGC	1 cut(s)	538
BstC8I	GCNNGC	5 cut(s)	328, 530, 539, 879, 883
BstDEI	CTNAG	4 cut(s)	38, 513, 542, 654
BstF5I	GGATG	3 cut(s)	348, 649, 670
BstHHI	GCGC	1 cut(s)	413
BstKTI	GATC	3 cut(s)	617, 630, 916
BstMAI	GTCTC	1 cut(s)	790
BstMBI	GATC	3 cut(s)	614, 627, 913
BstMWI	GCNNNNNNNGC	3 cut(s)	534, 538, 785
BstNI	CCWGG	1 cut(s)	810
BstNSI	RCATGY	2 cut(s)	83, 885
BstSCI	CCNGG	2 cut(s)	523, 808
BstSFI	CTRYAG	2 cut(s)	225, 231
BstV1I	GCAGC	3 cut(s)	317, 409, 775
BstV2I	GAAGAC	2 cut(s)	78, 465
BstX2I	RGATCY	1 cut(s)	627
BstXI	CCANNNNNNTGG	1 cut(s)	528
BstYI	RGATCY	1 cut(s)	627
BsuRI	GGCC	3 cut(s)	256, 308, 877
BtrI	CACGTC	1 cut(s)	580
BtsCI	GGATG	3 cut(s)	348, 649, 670
BtsI	GCAGTG	1 cut(s)	326
BtsIMutI	CAGTG	3 cut(s)	240, 312, 326
Cac8I	GCNNGC	5 cut(s)	328, 530, 539, 879, 883
CfoI	GCGC	1 cut(s)	413
Cfr13I	GGNCC	3 cut(s)	255, 306, 842
CseI	GACGC	2 cut(s)	725, 749
CsiI	ACCWGGT	1 cut(s)	808
Csp6I	GTAC	1 cut(s)	583
CviAII	CATG	4 cut(s)	80, 239, 834, 882
CviQI	GTAC	1 cut(s)	583
DdeI	CTNAG	4 cut(s)	38, 513, 542, 654
DpnI	GATC	3 cut(s)	616, 629, 915
DpnII	GATC	3 cut(s)	614, 627, 913
DrdI	GACNNNNNNGTC	1 cut(s)	80
DseDI	GACNNNNNNGTC	1 cut(s)	80
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Eco130I	CCWWGG	2 cut(s)	207, 284
Eco47I	GGWCC	1 cut(s)	842
Eco57I	CTGAAG	1 cut(s)	72
EcoO109I	RGGNCCY	1 cut(s)	306
EcoRI	GAATTC	1 cut(s)	951
EcoRII	CCWGG	1 cut(s)	808
EcoT14I	CCWWGG	2 cut(s)	207, 284
EcoT22I	ATGCAT	1 cut(s)	982
ErhI	CCWWGG	2 cut(s)	207, 284
FaeI	CATG	4 cut(s)	83, 242, 837, 885
FaqI	GGGAC	2 cut(s)	68, 810
FatI	CATG	4 cut(s)	79, 238, 833, 881
FauI	CCCGC	2 cut(s)	423, 661
Fnu4HI	GCNGC	3 cut(s)	331, 398, 789
FokI	GGATG	3 cut(s)	335, 636, 677
Fsp4HI	GCNGC	3 cut(s)	331, 398, 789
FspBI	CTAG	1 cut(s)	285
FspI	TGCGCA	1 cut(s)	412
GlaI	GCGC	1 cut(s)	412
GluI	GCNGC	3 cut(s)	331, 398, 789
GsuI	CTGGAG	1 cut(s)	413
HaeIII	GGCC	3 cut(s)	256, 308, 877
HapII	CCGG	1 cut(s)	525
HgaI	GACGC	2 cut(s)	725, 749
HhaI	GCGC	1 cut(s)	413
Hin1II	CATG	4 cut(s)	83, 242, 837, 885
Hin6I	GCGC	1 cut(s)	411
HinP1I	GCGC	1 cut(s)	411
HinfI	GANTC	6 cut(s)	5, 137, 376, 590, 851, 995
HpaII	CCGG	1 cut(s)	525
HphI	GGTGA	2 cut(s)	566, 585
Hpy166II	GTNNAC	4 cut(s)	250, 281, 383, 583
Hpy188I	TCNGA	2 cut(s)	136, 142
Hpy188III	TCNNGA	9 cut(s)	9, 380, 392, 470, 653, 662, 740, 803, 845
Hpy8I	GTNNAC	4 cut(s)	250, 281, 383, 583
HpyAV	CCTTC	3 cut(s)	96, 319, 551
HpyCH4III	ACNGT	2 cut(s)	235, 316
HpyCH4IV	ACGT	1 cut(s)	579
HpyCH4V	TGCA	8 cut(s)	200, 238, 319, 575, 715, 815, 865, 980
HpyF10VI	GCNNNNNNNGC	3 cut(s)	534, 538, 785
HpyF3I	CTNAG	4 cut(s)	38, 513, 542, 654
HpySE526I	ACGT	1 cut(s)	579
Hsp92II	CATG	4 cut(s)	83, 242, 837, 885
HspAI	GCGC	1 cut(s)	411
Kzo9I	GATC	3 cut(s)	614, 627, 913
LmnI	GCTCC	1 cut(s)	394
Lsp1109I	GCAGC	3 cut(s)	317, 409, 775
LweI	GCATC	1 cut(s)	655
MabI	ACCWGGT	1 cut(s)	808
MaeI	CTAG	1 cut(s)	285
MaeII	ACGT	1 cut(s)	579
MaeIII	GTNAC	2 cut(s)	673, 681
MalI	GATC	3 cut(s)	616, 629, 915
MboI	GATC	3 cut(s)	614, 627, 913
MfeI	CAATTG	1 cut(s)	492
MflI	RGATCY	1 cut(s)	627
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	6 cut(s)	153, 169, 492, 686, 745, 951
MlyI	GAGTC	2 cut(s)	845, 1004
MnlI	CCTC	9 cut(s)	33, 36, 124, 336, 537, 545, 554, 723, 915
Mph1103I	ATGCAT	1 cut(s)	982
MroXI	GAANNNNTTC	2 cut(s)	375, 387
MseI	TTAA	1 cut(s)	168
MslI	CAYNNNNRTG	1 cut(s)	424
MspA1I	CMGCKG	2 cut(s)	181, 330
MspI	CCGG	1 cut(s)	525
MspR9I	CCNGG	2 cut(s)	525, 810
MunI	CAATTG	1 cut(s)	492
MvaI	CCWGG	1 cut(s)	810
MwoI	GCNNNNNNNGC	3 cut(s)	534, 538, 785
NciI	CCSGG	1 cut(s)	525
NdeII	GATC	3 cut(s)	614, 627, 913
NlaIII	CATG	4 cut(s)	83, 242, 837, 885
NlaIV	GGNNCC	3 cut(s)	307, 565, 903
NmuCI	GTSAC	1 cut(s)	681
NsbI	TGCGCA	1 cut(s)	412
NsiI	ATGCAT	1 cut(s)	982
NspI	RCATGY	2 cut(s)	83, 885
PaeI	GCATGC	1 cut(s)	885
PciI	ACATGT	1 cut(s)	79
PdmI	GAANNNNTTC	2 cut(s)	375, 387
PfeI	GAWTC	4 cut(s)	5, 137, 376, 590
PflMI	CCANNNNNTGG	2 cut(s)	302, 834
PkrI	GCNGC	3 cut(s)	332, 399, 790
PleI	GAGTC	2 cut(s)	845, 1003
PpsI	GAGTC	2 cut(s)	845, 1003
PscI	ACATGT	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	808
PspGI	CCWGG	1 cut(s)	808
PspN4I	GGNNCC	3 cut(s)	307, 565, 903
PspPI	GGNCC	3 cut(s)	255, 306, 842
PsuI	RGATCY	1 cut(s)	627
PvuII	CAGCTG	2 cut(s)	181, 330
RsaI	GTAC	1 cut(s)	584
RsaNI	GTAC	1 cut(s)	583
RseI	CAYNNNNRTG	1 cut(s)	424
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	3 cut(s)	331, 398, 789
Sau3AI	GATC	3 cut(s)	614, 627, 913
Sau96I	GGNCC	3 cut(s)	255, 306, 842
SchI	GAGTC	2 cut(s)	845, 1004
ScrFI	CCNGG	2 cut(s)	525, 810
SduI	GDGCHC	1 cut(s)	189
SexAI	ACCWGGT	1 cut(s)	808
SfaNI	GCATC	1 cut(s)	655
SfcI	CTRYAG	2 cut(s)	225, 231
SinI	GGWCC	1 cut(s)	842
SmiMI	CAYNNNNRTG	1 cut(s)	424
SmlI	CTYRAG	1 cut(s)	468
SmoI	CTYRAG	1 cut(s)	468
SphI	GCATGC	1 cut(s)	885
Sse9I	AATT	6 cut(s)	153, 169, 492, 686, 745, 951
SsiI	CCGC	2 cut(s)	430, 668
SspMI	CTAG	1 cut(s)	285
StyD4I	CCNGG	2 cut(s)	523, 808
StyI	CCWWGG	2 cut(s)	207, 284
TaaI	ACNGT	2 cut(s)	235, 316
TaiI	ACGT	1 cut(s)	582
TaqI	TCGA	3 cut(s)	10, 613, 925
TasI	AATT	6 cut(s)	153, 169, 492, 686, 745, 951
TatI	WGTACW	1 cut(s)	582
TfiI	GAWTC	4 cut(s)	5, 137, 376, 590
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	3 cut(s)	240, 319, 326
TseFI	GTSAC	1 cut(s)	681
TseI	GCWGC	3 cut(s)	330, 397, 788
Tsp45I	GTSAC	1 cut(s)	681
TspDTI	ATGAA	7 cut(s)	84, 96, 114, 162, 263, 384, 603
TspRI	CASTG	3 cut(s)	240, 319, 326
Van91I	CCANNNNNTGG	2 cut(s)	302, 834
VpaK11BI	GGWCC	1 cut(s)	842
XapI	RAATTY	1 cut(s)	951
XceI	RCATGY	2 cut(s)	83, 885
XmaJI	CCTAGG	1 cut(s)	284
XmnI	GAANNNNTTC	2 cut(s)	375, 387
XspI	CTAG	1 cut(s)	285
Zsp2I	ATGCAT	1 cut(s)	982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.