Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003822

Physical Location & Seq

Genomic Coordinates Reverse (-)

17557697 .. 17559675

Gene Structure 1979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g20040.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGATTCAAGAAATTTCTGTGCTGTTTCCATGGATTCTCGAAATCCCTGTAAGATAACGTTCAAGAAGCTCAGGAGGGAAGAAGAACAAAATACGCCTCCCCAAGACGCCATCGACGTCCCTCCATCTTCTTCTTCCACTTCGTCGGATTCGGATTCGGGTTCGGACGATGAAACCCTTCGAACCCATCTGCAATCGAACGAGCTGGTGCTGTATGACCCTGCAACTGCAGCAGCCAATGCCAATGCCAATGCCGCAGACACAGTGCATGACAATGCCAAAACCCTCATTTCGTCTCCGTTTGATCACCCGAACAACCCAATGTCGTTTCCATGGACATATCCGTTTAATCACCCACCTAGGGTTTTGCCGTCGGTTGGGGCTTTCACTGTGCAGTGTGCCAATTGCTTCAAATGGAGGCTCATTCCGTCGAAGGAGAAGTATGAGGAAATTCGTGAGCATATTCTGGAAGAGCCCTTTTACTGCGAAACTGCACGCGAATGGCGGGATTTGGTGTCTTGTGATGACCCGGAAGACATTACTCAGGATGGGAGCAGGCTCTGGGCCATTGATAAGCCCAACATTGCTCAGCCCCCGCGTGGATGGCAGCGATTGCTCAGAATCAGAGGTGAAGGAGGCACCCGATTCGCAGACGTGTACTATGAATCGCCGACAGGCAAGAAGCTTCGTTCGTCGGTGGAGATCCAGAAGTATTTGCTTCAACATCCCGAGTATATGGATGCAGGAGTGAACATGTCACAGTTCTCATTTGTAACTCCGAAGCCTTTGCAGGAAAATTATGTGAGAAAGCGTTCTGACAATTACTCGAAGAAGCATACTGCTCATTTGACAGACTCTGCTGATACACCTAGACTTCTTGCACCTGGTGAAGAAATAAATCCAGTAGCATGGGTTGGTCCAGCTGACAGTCCAGAATTGCAACCTCGTCGGCTAGCACTCCCTCCTCCAGAAGCAAGGGAACCTCTGTTTGATCCCTCTGTTCGACCGACAAAGAAGCGAGCAACAAGAACTCCATCATCAAAGACTTACAAGGCAGATCCGAACATTAGCATGGAGTCAAGTCCAGAAAGACCTGATCAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008327 GO:0019899 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD zf-CW

Protein Analysis

369

Amino Acids

41.6

Weight (kDa)

5.72

Isoelectric Point (pI)

68.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35330 AT5G35330 AT5G35330 AT5G35330
fragaria_vesca	FvH4_4g06240 FvH4_4g06240 FvH4_4g06240 FvH4_4g06240 FvH4_4g06240
malus_domestica	MD13G1234700.v1.1 MD16G1239500.v1.1
prunus_persica	Prupe.1G065600_v2.0.a1 Prupe.1G065600_v2.0.a1
pyrus_communis	pycom16g20040
rosa_chinensis	RchiOBHm_Chr4g0397961
rosa_laevigata	RLG00000009392
rosa_multiflora	Rmu_co8227835.1_g000001 Rmu_co8419633.1_g000001 Rmu_sc0001074.1_g000002 Rmu_sc0001074.1_g000005 Rmu_sc0003773.1_g000027
rosa_roxburghii	Rroxscaffold_5G00342870 Rroxscaffold_5G00342930
rosa_rugosa	Rorug04G0004900 Rorug04G0005000
rosa_samantha	Rh4AG081200 Rh4AG081600 Rh4BG079200 Rh4CG088800 Rh4CG089100 Rh4DG074700
rosa_wichuraiana	Rw0G019360 Rw4G006770 Rw4G006790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	120
AccB1I	GGYRCC	1 cut(s)	638
AccII	CGCG	2 cut(s)	498, 598
AciI	CCGC	3 cut(s)	255, 505, 596
AclI	AACGTT	1 cut(s)	59
AclWI	GGATC	3 cut(s)	697, 986, 1052
AcsI	RAATTY	2 cut(s)	13, 450
AcyI	GRCGYC	2 cut(s)	108, 117
AdeI	CACNNNGTG	1 cut(s)	887
AfaI	GTAC	1 cut(s)	659
AfiI	CCNNNNNNNGG	3 cut(s)	361, 377, 599
AflIII	ACRYGT	2 cut(s)	654, 753
AgsI	TTSAA	4 cut(s)	9, 64, 412, 722
AjiI	CACGTC	1 cut(s)	655
AjnI	CCWGG	1 cut(s)	883
AluBI	AGCT	4 cut(s)	70, 205, 685, 923
AluI	AGCT	4 cut(s)	70, 205, 685, 923
Alw26I	GTCTC	1 cut(s)	300
AlwI	GGATC	3 cut(s)	697, 986, 1052
AlwNI	CAGNNNCTG	2 cut(s)	561, 857
Ama87I	CYCGRG	1 cut(s)	728
AoxI	GGCC	1 cut(s)	564
ApeKI	GCWGC	3 cut(s)	230, 233, 607
ApoI	RAATTY	2 cut(s)	13, 450
Asp700I	GAANNNNTTC	2 cut(s)	177, 811
AspA2I	CCTAGG	1 cut(s)	359
AspS9I	GGNCC	2 cut(s)	564, 917
AsuC2I	CCSGG	1 cut(s)	530
AsuHPI	GGTGA	4 cut(s)	299, 344, 641, 899
AsuII	TTCGAA	1 cut(s)	181
AsuNHI	GCTAGC	1 cut(s)	952
AvaI	CYCGRG	1 cut(s)	728
AvaII	GGWCC	1 cut(s)	917
AvrII	CCTAGG	1 cut(s)	359
BanI	GGYRCC	1 cut(s)	638
BanII	GRGCYC	1 cut(s)	477
BbsI	GAAGAC	1 cut(s)	540
BbvI	GCAGC	3 cut(s)	242, 245, 619
BccI	CCATC	6 cut(s)	119, 133, 195, 542, 597, 1042
BceAI	ACGGC	1 cut(s)	355
BcgI	CGANNNNNNTGC	6 cut(s)	628, 662, 769, 803, 929, 963
BciT130I	CCWGG	1 cut(s)	885
BclI	TGATCA	2 cut(s)	304, 1096
BcnI	CCSGG	1 cut(s)	530
BcoDI	GTCTC	1 cut(s)	300
BfaI	CTAG	3 cut(s)	360, 870, 953
BfmI	CTRYAG	1 cut(s)	228
BisI	GCNGC	4 cut(s)	231, 234, 255, 608
BlnI	CCTAGG	1 cut(s)	359
BlpI	GCTNAGC	1 cut(s)	588
BlsI	GCNGC	4 cut(s)	232, 235, 256, 609
Bme1390I	CCNGG	2 cut(s)	530, 885
Bme18I	GGWCC	1 cut(s)	917
BmeT110I	CYCGRG	1 cut(s)	728
BmgBI	CACGTC	1 cut(s)	655
BmgT120I	GGNCC	2 cut(s)	564, 917
BmiI	GGNNCC	2 cut(s)	640, 981
BmrFI	CCNGG	2 cut(s)	530, 885
BmsI	GCATC	1 cut(s)	730
BmtI	GCTAGC	1 cut(s)	956
BpiI	GAAGAC	1 cut(s)	540
BpmI	CTGGAG	1 cut(s)	951
Bpu10I	CCTNAGC	1 cut(s)	71
Bpu1102I	GCTNAGC	1 cut(s)	588
Bpu14I	TTCGAA	1 cut(s)	181
BpuMI	CCSGG	1 cut(s)	530
BsaHI	GRCGYC	2 cut(s)	108, 117
BsaJI	CCNNGG	3 cut(s)	30, 332, 359
BsaXI	ACNNNNNCTCC	2 cut(s)	1015, 1045
Bsc4I	CCNNNNNNNGG	3 cut(s)	361, 377, 599
Bse1I	ACTGG	1 cut(s)	902
Bse3DI	GCAATG	1 cut(s)	582
BseBI	CCWGG	1 cut(s)	885
BseDI	CCNNGG	3 cut(s)	30, 332, 359
BseGI	GGATG	4 cut(s)	553, 608, 724, 745
BseLI	CCNNNNNNNGG	3 cut(s)	361, 377, 599
BseMI	GCAATG	1 cut(s)	582
BseMII	CTCAG	4 cut(s)	85, 557, 602, 631
BseNI	ACTGG	1 cut(s)	902
BseRI	GAGGAG	1 cut(s)	954
BseXI	GCAGC	3 cut(s)	242, 245, 619
BsgI	GTGCAG	2 cut(s)	413, 477
Bsh1236I	CGCG	2 cut(s)	498, 598
Bsh1285I	CGRYCG	1 cut(s)	1007
BshFI	GGCC	1 cut(s)	566
BshNI	GGYRCC	1 cut(s)	638
BsiEI	CGRYCG	1 cut(s)	1007
BsiHKCI	CYCGRG	1 cut(s)	728
BsiSI	CCGG	1 cut(s)	530
BslFI	GGGAC	1 cut(s)	104
BslI	CCNNNNNNNGG	3 cut(s)	361, 377, 599
BsmAI	GTCTC	1 cut(s)	300
BsmBI	CGTCTC	1 cut(s)	300
BsmFI	GGGAC	1 cut(s)	104
BsnI	GGCC	1 cut(s)	566
BsoBI	CYCGRG	1 cut(s)	728
Bsp119I	TTCGAA	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp143I	GATC	5 cut(s)	304, 702, 991, 1057, 1096
Bsp1720I	GCTNAGC	1 cut(s)	588
Bsp19I	CCATGG	2 cut(s)	30, 332
BspACI	CCGC	3 cut(s)	255, 505, 596
BspANI	GGCC	1 cut(s)	566
BspCNI	CTCAG	4 cut(s)	84, 556, 601, 630
BspFNI	CGCG	2 cut(s)	498, 598
BspLI	GGNNCC	2 cut(s)	640, 981
BspMAI	CTGCAG	1 cut(s)	232
BspOI	GCTAGC	1 cut(s)	956
BspPI	GGATC	3 cut(s)	697, 986, 1052
BspQI	GCTCTTC	1 cut(s)	465
BspT104I	TTCGAA	1 cut(s)	181
BspT107I	GGYRCC	1 cut(s)	638
BsrDI	GCAATG	1 cut(s)	582
BsrI	ACTGG	1 cut(s)	902
BssECI	CCNNGG	3 cut(s)	30, 332, 359
BssMI	GATC	5 cut(s)	304, 702, 991, 1057, 1096
BssNI	GRCGYC	2 cut(s)	108, 117
BssT1I	CCWWGG	3 cut(s)	30, 332, 359
Bst2UI	CCWGG	1 cut(s)	885
Bst4CI	ACNGT	4 cut(s)	265, 391, 762, 929
Bst6I	CTCTTC	1 cut(s)	465
BstACI	GRCGYC	2 cut(s)	108, 117
BstAPI	GCANNNNNTGC	2 cut(s)	239, 613
BstBI	TTCGAA	1 cut(s)	181
BstC8I	GCNNGC	4 cut(s)	496, 557, 954, 1020
BstDEI	CTNAG	4 cut(s)	71, 543, 588, 617
BstDSI	CCRYGG	2 cut(s)	30, 332
BstF5I	GGATG	4 cut(s)	553, 608, 724, 745
BstFNI	CGCG	2 cut(s)	498, 598
BstKTI	GATC	5 cut(s)	307, 705, 994, 1060, 1099
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	5 cut(s)	304, 702, 991, 1057, 1096
BstMCI	CGRYCG	1 cut(s)	1007
BstMWI	GCNNNNNNNGC	5 cut(s)	230, 239, 254, 604, 613
BstNI	CCWGG	1 cut(s)	885
BstNSI	RCATGY	1 cut(s)	757
BstSCI	CCNGG	2 cut(s)	528, 883
BstSFI	CTRYAG	1 cut(s)	228
BstUI	CGCG	2 cut(s)	498, 598
BstV1I	GCAGC	3 cut(s)	242, 245, 619
BstV2I	GAAGAC	1 cut(s)	540
BstX2I	RGATCY	2 cut(s)	702, 1057
BstXI	CCANNNNNNTGG	1 cut(s)	909
BstYI	RGATCY	2 cut(s)	702, 1057
BsuRI	GGCC	1 cut(s)	566
BtgI	CCRYGG	2 cut(s)	30, 332
BtrI	CACGTC	1 cut(s)	655
BtsCI	GGATG	4 cut(s)	553, 608, 724, 745
BtsI	GCAGTG	1 cut(s)	401
BtsIMutI	CAGTG	3 cut(s)	270, 387, 401
Cac8I	GCNNGC	4 cut(s)	496, 557, 954, 1020
CaiI	CAGNNNCTG	2 cut(s)	561, 857
Cfr13I	GGNCC	2 cut(s)	564, 917
CseI	GACGC	1 cut(s)	116
CsiI	ACCWGGT	1 cut(s)	883
Csp6I	GTAC	1 cut(s)	658
CviAII	CATG	6 cut(s)	31, 269, 333, 754, 909, 1072
CviQI	GTAC	1 cut(s)	658
DdeI	CTNAG	4 cut(s)	71, 543, 588, 617
DpnI	GATC	5 cut(s)	306, 704, 993, 1059, 1098
DpnII	GATC	5 cut(s)	304, 702, 991, 1057, 1096
DraIII	CACNNNGTG	1 cut(s)	887
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
Eco130I	CCWWGG	3 cut(s)	30, 332, 359
Eco24I	GRGCYC	1 cut(s)	477
Eco47I	GGWCC	1 cut(s)	917
Eco88I	CYCGRG	1 cut(s)	728
EcoRII	CCWGG	1 cut(s)	883
EcoT14I	CCWWGG	3 cut(s)	30, 332, 359
EcoT38I	GRGCYC	1 cut(s)	477
ErhI	CCWWGG	3 cut(s)	30, 332, 359
Esp3I	CGTCTC	1 cut(s)	300
FaeI	CATG	6 cut(s)	34, 272, 336, 757, 912, 1075
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	6 cut(s)	30, 268, 332, 753, 908, 1071
FauI	CCCGC	2 cut(s)	498, 603
FbaI	TGATCA	2 cut(s)	304, 1096
Fnu4HI	GCNGC	4 cut(s)	231, 234, 255, 608
FokI	GGATG	4 cut(s)	560, 615, 711, 752
FriOI	GRGCYC	1 cut(s)	477
Fsp4HI	GCNGC	4 cut(s)	231, 234, 255, 608
FspBI	CTAG	3 cut(s)	360, 870, 953
GluI	GCNGC	4 cut(s)	231, 234, 255, 608
GsuI	CTGGAG	1 cut(s)	951
HaeIII	GGCC	1 cut(s)	566
HapII	CCGG	1 cut(s)	530
HgaI	GACGC	1 cut(s)	116
Hin1I	GRCGYC	2 cut(s)	108, 117
Hin1II	CATG	6 cut(s)	34, 272, 336, 757, 912, 1075
HindIII	AAGCTT	1 cut(s)	683
HinfI	GANTC	9 cut(s)	5, 35, 149, 155, 621, 645, 665, 854, 1076
HpaII	CCGG	1 cut(s)	530
HphI	GGTGA	4 cut(s)	299, 344, 641, 899
Hpy166II	GTNNAC	2 cut(s)	658, 751
Hpy188I	TCNGA	8 cut(s)	148, 154, 166, 620, 626, 780, 817, 1062
Hpy8I	GTNNAC	2 cut(s)	658, 751
Hpy99I	CGWCG	6 cut(s)	119, 148, 376, 433, 697, 951
HpyAV	CCTTC	3 cut(s)	188, 427, 626
HpyCH4III	ACNGT	4 cut(s)	265, 391, 762, 929
HpyCH4IV	ACGT	3 cut(s)	59, 117, 654
HpyF10VI	GCNNNNNNNGC	5 cut(s)	230, 239, 254, 604, 613
HpyF3I	CTNAG	4 cut(s)	71, 543, 588, 617
HpySE526I	ACGT	3 cut(s)	59, 117, 654
Hsp92I	GRCGYC	2 cut(s)	108, 117
Hsp92II	CATG	6 cut(s)	34, 272, 336, 757, 912, 1075
Ksp22I	TGATCA	2 cut(s)	304, 1096
Kzo9I	GATC	5 cut(s)	304, 702, 991, 1057, 1096
LguI	GCTCTTC	1 cut(s)	465
LmnI	GCTCC	1 cut(s)	552
Lsp1109I	GCAGC	3 cut(s)	242, 245, 619
LweI	GCATC	1 cut(s)	730
MabI	ACCWGGT	1 cut(s)	883
MaeI	CTAG	3 cut(s)	360, 870, 953
MaeII	ACGT	3 cut(s)	59, 117, 654
MaeIII	GTNAC	2 cut(s)	756, 772
MalI	GATC	5 cut(s)	306, 704, 993, 1059, 1098
MboI	GATC	5 cut(s)	304, 702, 991, 1057, 1096
MboII	GAAGA	9 cut(s)	92, 95, 120, 123, 126, 482, 545, 841, 902
MfeI	CAATTG	1 cut(s)	403
MflI	RGATCY	2 cut(s)	702, 1057
MhlI	GDGCHC	1 cut(s)	477
MluCI	AATT	6 cut(s)	13, 403, 450, 796, 820, 935
MlyI	GAGTC	2 cut(s)	848, 1085
MmeI	TCCRAC	1 cut(s)	126
MroXI	GAANNNNTTC	2 cut(s)	177, 811
MseI	TTAA	1 cut(s)	348
MslI	CAYNNNNRTG	3 cut(s)	273, 499, 1070
MspA1I	CMGCKG	1 cut(s)	923
MspI	CCGG	1 cut(s)	530
MspR9I	CCNGG	2 cut(s)	530, 885
MunI	CAATTG	1 cut(s)	403
MvaI	CCWGG	1 cut(s)	885
MvnI	CGCG	2 cut(s)	498, 598
MwoI	GCNNNNNNNGC	5 cut(s)	230, 239, 254, 604, 613
NciI	CCSGG	1 cut(s)	530
NcoI	CCATGG	2 cut(s)	30, 332
NdeII	GATC	5 cut(s)	304, 702, 991, 1057, 1096
NheI	GCTAGC	1 cut(s)	952
NlaIII	CATG	6 cut(s)	34, 272, 336, 757, 912, 1075
NlaIV	GGNNCC	2 cut(s)	640, 981
NmuCI	GTSAC	1 cut(s)	756
NspI	RCATGY	1 cut(s)	757
NspV	TTCGAA	1 cut(s)	181
PciI	ACATGT	1 cut(s)	753
PciSI	GCTCTTC	1 cut(s)	465
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PdmI	GAANNNNTTC	2 cut(s)	177, 811
PfeI	GAWTC	7 cut(s)	5, 35, 149, 155, 621, 645, 665
PkrI	GCNGC	4 cut(s)	232, 235, 256, 609
PleI	GAGTC	2 cut(s)	848, 1084
PpsI	GAGTC	2 cut(s)	848, 1084
PscI	ACATGT	1 cut(s)	753
Psp1406I	AACGTT	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	883
PspGI	CCWGG	1 cut(s)	883
PspN4I	GGNNCC	2 cut(s)	640, 981
PspPI	GGNCC	2 cut(s)	564, 917
PstI	CTGCAG	1 cut(s)	232
PstNI	CAGNNNCTG	2 cut(s)	561, 857
PsuI	RGATCY	2 cut(s)	702, 1057
PvuII	CAGCTG	1 cut(s)	923
RsaI	GTAC	1 cut(s)	659
RsaNI	GTAC	1 cut(s)	658
RseI	CAYNNNNRTG	3 cut(s)	273, 499, 1070
SapI	GCTCTTC	1 cut(s)	465
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	4 cut(s)	231, 234, 255, 608
Sau3AI	GATC	5 cut(s)	304, 702, 991, 1057, 1096
Sau96I	GGNCC	2 cut(s)	564, 917
SchI	GAGTC	2 cut(s)	848, 1085
ScrFI	CCNGG	2 cut(s)	530, 885
SduI	GDGCHC	1 cut(s)	477
SexAI	ACCWGGT	1 cut(s)	883
SfaNI	GCATC	1 cut(s)	730
SfcI	CTRYAG	1 cut(s)	228
SfuI	TTCGAA	1 cut(s)	181
SinI	GGWCC	1 cut(s)	917
SmiMI	CAYNNNNRTG	3 cut(s)	273, 499, 1070
Sse9I	AATT	6 cut(s)	13, 403, 450, 796, 820, 935
SsiI	CCGC	3 cut(s)	255, 505, 596
SspMI	CTAG	3 cut(s)	360, 870, 953
StyD4I	CCNGG	2 cut(s)	528, 883
StyI	CCWWGG	3 cut(s)	30, 332, 359
TaaI	ACNGT	4 cut(s)	265, 391, 762, 929
TaiI	ACGT	3 cut(s)	62, 120, 657
TaqI	TCGA	7 cut(s)	40, 114, 181, 197, 431, 827, 1003
TaqII	GACCGA	1 cut(s)	1021
TasI	AATT	6 cut(s)	13, 403, 450, 796, 820, 935
TatI	WGTACW	1 cut(s)	657
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	7 cut(s)	5, 35, 149, 155, 621, 645, 665
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	3 cut(s)	270, 394, 401
TseFI	GTSAC	1 cut(s)	756
TseI	GCWGC	3 cut(s)	230, 233, 607
Tsp45I	GTSAC	1 cut(s)	756
TspDTI	ATGAA	2 cut(s)	186, 678
TspGWI	ACGGA	3 cut(s)	288, 333, 417
TspRI	CASTG	3 cut(s)	270, 394, 401
VpaK11BI	GGWCC	1 cut(s)	917
XapI	RAATTY	2 cut(s)	13, 450
XceI	RCATGY	1 cut(s)	757
XmaJI	CCTAGG	1 cut(s)	359
XmnI	GAANNNNTTC	2 cut(s)	177, 811
XspI	CTAG	3 cut(s)	360, 870, 953
ZraI	GACGTC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.