RLG00000009392

methyl-CpG-binding domain-containing protein 2-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
52177924 .. 52179960
2037 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009392

Sequence Viewer

Length: 1005 bp
ATGGAATCCACGACTCCGAGCCCTTGTAAGATCACCCTCAAGCTCAGAAGAGACGACGAACAAAAACAAGAGGCGAAAACGAACGACGACAAACCCGCCCAATCTCCTTCGTCTTCCTCCGTCTCGTCGCCGCCGTCTTCTCCTTCCTCCTCCGACGAGATTCTCCAGTCCCATCTTCAATCCCAGGAGCTCGTGCTCTACGATCCCGCCGTCGCAGCGAATGCCGGTGGTGACGCTAGTCGCGCTGCTACAGGGAATCGGATTCCGAATCTTAACAAATCCATTTCTCCGGTCTCGGTTTCGAATAGTCAAGGTCCTAGGGTTTTGCCGTCCGTCGGGGCCTTCACTGTGCAGTGTGCCAATTGCTTCAAGTGGAGGCTGATTCCGACGAAGGAGCAGTATGAGCAAATCCGGGAGCACATTCTGGAACGGCCGTTCTACTGTGAAACTGCAAAGGAATGGCGGCCGTCGATATCGTGTGATGATCCGGCTGACATTACTCAAGACGGGAGCCGGCTCTGGGCCATTGATAGGCCCAACATTGCTCAGCCACCACCCGGCTGGCAACGGCTACTCAGGATTCGAGGTGAAGGAAGCACCAAGTTTGCAGATGTTTATTATCAAGCGCCGTCGGGCAAGAGACTTCGGTCCATGGTGGAGGTTCAAAAGTATTTGATTGAACATCCCGAGTATATGGTGGATGGGCTATCTATGGCACAATTTTCATTTCAAATTCCTAGGCCTCTGCAGGAGAATTATGTGAGGAAACGCCCTGCTGCTCCTCGTTTGACAGCTGCTGCCCATGCTAGTAAAACTCTTCAACCTACTGAAGCAAATCCCATAGCATGGGCTGGTCCAGATGATACAGAGTTGCAACTTGGTTCTCCATACTTGGAGGCTCATGTGTTTGACCCTGTTGGTCGACCTACAAAGAAGCGAGCCAAAACAAGAACTCCATCAAGGGTTTACAATAGTAATTTAAATATCAGCACAGAGTCGAGCTAG

Protein Analysis

335

Amino Acids

37.04

Weight (kDa)

8.71

Isoelectric Point (pI)

70.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CW PF07496 116 - 165 3.4e-11 CW-type Zinc Finger
MBD PF01429 185 - 245 1.3e-13 Methyl-CpG binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 846
AccI GTMKAC 1 cut(s) 922
AccII CGCG 1 cut(s) 243
AciI CCGC 4 cut(s) 96, 131, 207, 463
AclWI GGATC 2 cut(s) 197, 479
AcoI YGGCCR 2 cut(s) 431, 464
AcsI RAATTY 1 cut(s) 732
AcuI CTGAAG 1 cut(s) 849
AfiI CCNNNNNNNGG 5 cut(s) 335, 520, 531, 557, 846
AgsI TTSAA 6 cut(s) 179, 370, 665, 680, 731, 821
AjnI CCWGG 1 cut(s) 183
AloI GAACNNNNNNTCC 2 cut(s) 419, 451
AluBI AGCT 4 cut(s) 43, 190, 794, 1002
AluI AGCT 4 cut(s) 43, 190, 794, 1002
Alw21I GWGCWC 3 cut(s) 192, 198, 420
Alw26I GTCTC 4 cut(s) 45, 127, 298, 634
AlwI GGATC 2 cut(s) 197, 479
AlwNI CAGNNNCTG 1 cut(s) 797
Ama87I CYCGRG 1 cut(s) 686
AoxI GGCC 6 cut(s) 339, 431, 464, 522, 533, 740
ApeKI GCWGC 5 cut(s) 215, 245, 776, 794, 797
ApoI RAATTY 1 cut(s) 732
AspA2I CCTAGG 2 cut(s) 317, 737
AspLEI GCGC 2 cut(s) 245, 628
AspS9I GGNCC 6 cut(s) 314, 339, 522, 534, 648, 854
AsuC2I CCSGG 2 cut(s) 413, 558
AsuHPI GGTGA 3 cut(s) 25, 242, 599
AsuII TTCGAA 1 cut(s) 302
AvaI CYCGRG 1 cut(s) 686
AvaII GGWCC 3 cut(s) 314, 648, 854
AvrII CCTAGG 2 cut(s) 317, 737
BanII GRGCYC 2 cut(s) 23, 192
BauI CACGAG 1 cut(s) 191
BbsI GAAGAC 2 cut(s) 105, 129
Bbv12I GWGCWC 3 cut(s) 192, 198, 420
BbvI GCAGC 5 cut(s) 227, 232, 763, 781, 784
BccI CCATC 3 cut(s) 180, 695, 964
BceAI ACGGC 8 cut(s) 118, 194, 313, 418, 446, 451, 584, 613
BciT130I CCWGG 1 cut(s) 185
BcnI CCSGG 2 cut(s) 413, 558
BcoDI GTCTC 4 cut(s) 45, 127, 298, 634
BfaI CTAG 5 cut(s) 237, 318, 738, 807, 1003
BfmI CTRYAG 2 cut(s) 249, 746
BfoI RGCGCY 1 cut(s) 629
BisI GCNGC 7 cut(s) 131, 216, 246, 464, 777, 795, 798
BlnI CCTAGG 2 cut(s) 317, 737
BlpI GCTNAGC 1 cut(s) 546
BlsI GCNGC 7 cut(s) 132, 217, 247, 465, 778, 796, 799
Bme1390I CCNGG 3 cut(s) 185, 413, 558
Bme18I GGWCC 3 cut(s) 314, 648, 854
BmeT110I CYCGRG 1 cut(s) 686
BmgT120I GGNCC 6 cut(s) 314, 339, 522, 534, 648, 854
BmiI GGNNCC 2 cut(s) 340, 512
BmrFI CCNGG 3 cut(s) 185, 413, 558
BoxI GACNNNNGTC 2 cut(s) 237, 646
BpiI GAAGAC 2 cut(s) 105, 129
BpmI CTGGAG 1 cut(s) 149
Bpu1102I GCTNAGC 1 cut(s) 546
Bpu14I TTCGAA 1 cut(s) 302
BpuEI CTTGAG 2 cut(s) 23, 486
BpuMI CCSGG 2 cut(s) 413, 558
BsaI GGTCTC 1 cut(s) 298
BsaJI CCNNGG 4 cut(s) 183, 317, 651, 737
BsaWI WCCGGW 1 cut(s) 289
BsaXI ACNNNNNCTCC 2 cut(s) 937, 967
Bsc4I CCNNNNNNNGG 5 cut(s) 335, 520, 531, 557, 846
Bse118I RCCGGY 2 cut(s) 224, 513
Bse1I ACTGG 1 cut(s) 166
Bse3DI GCAATG 1 cut(s) 540
BseBI CCWGG 1 cut(s) 185
BseDI CCNNGG 4 cut(s) 183, 317, 651, 737
BseGI GGATG 2 cut(s) 682, 706
BseLI CCNNNNNNNGG 5 cut(s) 335, 520, 531, 557, 846
BseMI GCAATG 1 cut(s) 540
BseMII CTCAG 3 cut(s) 58, 560, 589
BseNI ACTGG 1 cut(s) 166
BseRI GAGGAG 2 cut(s) 139, 771
BseX3I CGGCCG 2 cut(s) 431, 464
BseXI GCAGC 5 cut(s) 227, 232, 763, 781, 784
BsgI GTGCAG 1 cut(s) 371
Bsh1236I CGCG 1 cut(s) 243
Bsh1285I CGRYCG 2 cut(s) 434, 467
BshFI GGCC 6 cut(s) 341, 433, 466, 524, 535, 742
BsiEI CGRYCG 2 cut(s) 434, 467
BsiHKAI GWGCWC 3 cut(s) 192, 198, 420
BsiHKCI CYCGRG 1 cut(s) 686
BsiSI CCGG 6 cut(s) 225, 290, 412, 488, 514, 558
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 5 cut(s) 335, 520, 531, 557, 846
BsmAI GTCTC 4 cut(s) 45, 127, 298, 634
BsmBI CGTCTC 2 cut(s) 45, 127
BsmFI GGGAC 1 cut(s) 154
BsmI GAATGC 1 cut(s) 226
BsnI GGCC 6 cut(s) 341, 433, 466, 524, 535, 742
Bso31I GGTCTC 1 cut(s) 298
BsoBI CYCGRG 1 cut(s) 686
Bsp119I TTCGAA 1 cut(s) 302
Bsp1286I GDGCHC 4 cut(s) 23, 192, 198, 420
Bsp143I GATC 3 cut(s) 30, 202, 484
Bsp1720I GCTNAGC 1 cut(s) 546
Bsp19I CCATGG 1 cut(s) 651
BspACI CCGC 4 cut(s) 96, 131, 207, 463
BspANI GGCC 6 cut(s) 341, 433, 466, 524, 535, 742
BspCNI CTCAG 3 cut(s) 57, 559, 588
BspFNI CGCG 1 cut(s) 243
BspLI GGNNCC 2 cut(s) 340, 512
BspMAI CTGCAG 1 cut(s) 750
BspPI GGATC 2 cut(s) 197, 479
BspT104I TTCGAA 1 cut(s) 302
BspTNI GGTCTC 1 cut(s) 298
BsrDI GCAATG 1 cut(s) 540
BsrFI RCCGGY 2 cut(s) 224, 513
BsrI ACTGG 1 cut(s) 166
BssAI RCCGGY 2 cut(s) 224, 513
BssECI CCNNGG 4 cut(s) 183, 317, 651, 737
BssMI GATC 3 cut(s) 30, 202, 484
BssSI CACGAG 1 cut(s) 191
BssT1I CCWWGG 3 cut(s) 317, 651, 737
Bst2BI CACGAG 1 cut(s) 191
Bst2UI CCWGG 1 cut(s) 185
Bst4CI ACNGT 2 cut(s) 349, 443
Bst6I CTCTTC 2 cut(s) 43, 822
BstAPI GCANNNNNTGC 1 cut(s) 221
BstBI TTCGAA 1 cut(s) 302
BstC8I GCNNGC 3 cut(s) 515, 563, 939
BstDEI CTNAG 3 cut(s) 44, 546, 575
BstDSI CCRYGG 1 cut(s) 651
BstF5I GGATG 2 cut(s) 682, 706
BstFNI CGCG 1 cut(s) 243
BstH2I RGCGCY 1 cut(s) 629
BstHHI GCGC 2 cut(s) 245, 628
BstKTI GATC 3 cut(s) 33, 205, 487
BstMAI GTCTC 4 cut(s) 45, 127, 298, 634
BstMBI GATC 3 cut(s) 30, 202, 484
BstMCI CGRYCG 2 cut(s) 434, 467
BstMWI GCNNNNNNNGC 5 cut(s) 215, 221, 242, 403, 803
BstNI CCWGG 1 cut(s) 185
BstPAI GACNNNNGTC 2 cut(s) 237, 646
BstSCI CCNGG 3 cut(s) 183, 411, 556
BstSFI CTRYAG 2 cut(s) 249, 746
BstUI CGCG 1 cut(s) 243
BstV1I GCAGC 5 cut(s) 227, 232, 763, 781, 784
BstV2I GAAGAC 2 cut(s) 105, 129
BstXI CCANNNNNNTGG 1 cut(s) 561
BstZI CGGCCG 2 cut(s) 431, 464
BsuRI GGCC 6 cut(s) 341, 433, 466, 524, 535, 742
BtgI CCRYGG 1 cut(s) 651
BtsCI GGATG 2 cut(s) 682, 706
BtsI GCAGTG 1 cut(s) 359
BtsIMutI CAGTG 2 cut(s) 345, 359
Cac8I GCNNGC 3 cut(s) 515, 563, 939
CaiI CAGNNNCTG 1 cut(s) 797
CfoI GCGC 2 cut(s) 245, 628
Cfr10I RCCGGY 2 cut(s) 224, 513
Cfr13I GGNCC 6 cut(s) 314, 339, 522, 534, 648, 854
CseI GACGC 1 cut(s) 242
CviAII CATG 4 cut(s) 652, 803, 846, 902
DdeI CTNAG 3 cut(s) 44, 546, 575
DpnI GATC 3 cut(s) 32, 204, 486
DpnII GATC 3 cut(s) 30, 202, 484
DraI TTTAAA 1 cut(s) 981
EaeI YGGCCR 2 cut(s) 431, 464
EagI CGGCCG 2 cut(s) 431, 464
Eam1104I CTCTTC 2 cut(s) 43, 822
EarI CTCTTC 2 cut(s) 43, 822
Ecl136II GAGCTC 1 cut(s) 190
EclXI CGGCCG 2 cut(s) 431, 464
Eco130I CCWWGG 3 cut(s) 317, 651, 737
Eco147I AGGCCT 1 cut(s) 742
Eco24I GRGCYC 2 cut(s) 23, 192
Eco31I GGTCTC 1 cut(s) 298
Eco32I GATATC 1 cut(s) 474
Eco47I GGWCC 3 cut(s) 314, 648, 854
Eco52I CGGCCG 2 cut(s) 431, 464
Eco53kI GAGCTC 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 849
Eco88I CYCGRG 1 cut(s) 686
EcoICRI GAGCTC 1 cut(s) 190
EcoO109I RGGNCCY 2 cut(s) 314, 339
EcoRII CCWGG 1 cut(s) 183
EcoRV GATATC 1 cut(s) 474
EcoT14I CCWWGG 3 cut(s) 317, 651, 737
EcoT38I GRGCYC 2 cut(s) 23, 192
ErhI CCWWGG 3 cut(s) 317, 651, 737
Esp3I CGTCTC 2 cut(s) 45, 127
FaeI CATG 4 cut(s) 655, 806, 849, 905
FaqI GGGAC 1 cut(s) 154
FatI CATG 4 cut(s) 651, 802, 845, 901
FauI CCCGC 2 cut(s) 103, 214
FblI GTMKAC 1 cut(s) 922
Fnu4HI GCNGC 7 cut(s) 131, 216, 246, 464, 777, 795, 798
FokI GGATG 2 cut(s) 669, 713
FriOI GRGCYC 2 cut(s) 23, 192
Fsp4HI GCNGC 7 cut(s) 131, 216, 246, 464, 777, 795, 798
FspBI CTAG 5 cut(s) 237, 318, 738, 807, 1003
GlaI GCGC 2 cut(s) 244, 627
GluI GCNGC 7 cut(s) 131, 216, 246, 464, 777, 795, 798
GsuI CTGGAG 1 cut(s) 149
HaeII RGCGCY 1 cut(s) 629
HaeIII GGCC 6 cut(s) 341, 433, 466, 524, 535, 742
HapII CCGG 6 cut(s) 225, 290, 412, 488, 514, 558
HgaI GACGC 1 cut(s) 242
HhaI GCGC 2 cut(s) 245, 628
Hin1II CATG 4 cut(s) 655, 806, 849, 905
Hin6I GCGC 2 cut(s) 243, 626
HinP1I GCGC 2 cut(s) 243, 626
HincII GTYRAC 1 cut(s) 923
HindII GTYRAC 1 cut(s) 923
HinfI GANTC 9 cut(s) 5, 13, 160, 256, 262, 268, 382, 580, 995
HpaII CCGG 6 cut(s) 225, 290, 412, 488, 514, 558
HphI GGTGA 3 cut(s) 25, 242, 599
Hpy166II GTNNAC 2 cut(s) 923, 967
Hpy188I TCNGA 6 cut(s) 18, 47, 154, 261, 267, 387
Hpy188III TCNNGA 5 cut(s) 425, 503, 577, 686, 857
Hpy8I GTNNAC 2 cut(s) 923, 967
Hpy99I CGWCG 9 cut(s) 59, 89, 130, 158, 215, 338, 391, 472, 634
HpyAV CCTTC 5 cut(s) 117, 153, 352, 385, 584
HpyCH4III ACNGT 2 cut(s) 349, 443
HpyCH4V TGCA 5 cut(s) 352, 452, 608, 748, 874
HpyF10VI GCNNNNNNNGC 5 cut(s) 215, 221, 242, 403, 803
HpyF3I CTNAG 3 cut(s) 44, 546, 575
Hsp92II CATG 4 cut(s) 655, 806, 849, 905
HspAI GCGC 2 cut(s) 243, 626
KroI GCCGGC 1 cut(s) 513
KroNI GCCGGC 1 cut(s) 515
Kzo9I GATC 3 cut(s) 30, 202, 484
LmnI GCTCC 5 cut(s) 187, 394, 415, 510, 784
Lsp1109I GCAGC 5 cut(s) 227, 232, 763, 781, 784
MaeI CTAG 5 cut(s) 237, 318, 738, 807, 1003
MaeIII GTNAC 1 cut(s) 230
MalI GATC 3 cut(s) 32, 204, 486
MboI GATC 3 cut(s) 30, 202, 484
MboII GAAGA 5 cut(s) 60, 105, 129, 167, 809
MfeI CAATTG 1 cut(s) 361
MhlI GDGCHC 4 cut(s) 23, 192, 198, 420
MluCI AATT 5 cut(s) 361, 719, 732, 754, 976
MlyI GAGTC 2 cut(s) 7, 1004
MmeI TCCRAC 2 cut(s) 177, 410
MroNI GCCGGC 1 cut(s) 513
MseI TTAA 2 cut(s) 273, 980
MspA1I CMGCKG 1 cut(s) 794
MspI CCGG 6 cut(s) 225, 290, 412, 488, 514, 558
MspR9I CCNGG 3 cut(s) 185, 413, 558
MunI CAATTG 1 cut(s) 361
Mva1269I GAATGC 1 cut(s) 226
MvaI CCWGG 1 cut(s) 185
MvnI CGCG 1 cut(s) 243
MwoI GCNNNNNNNGC 5 cut(s) 215, 221, 242, 403, 803
NaeI GCCGGC 1 cut(s) 515
NciI CCSGG 2 cut(s) 413, 558
NcoI CCATGG 1 cut(s) 651
NdeII GATC 3 cut(s) 30, 202, 484
NgoMIV GCCGGC 1 cut(s) 513
NlaIII CATG 4 cut(s) 655, 806, 849, 905
NlaIV GGNNCC 2 cut(s) 340, 512
NmuCI GTSAC 1 cut(s) 230
NspV TTCGAA 1 cut(s) 302
PceI AGGCCT 1 cut(s) 742
PcsI WCGNNNNNNNCGW 3 cut(s) 131, 198, 207
PctI GAATGC 1 cut(s) 226
PdiI GCCGGC 1 cut(s) 515
PfeI GAWTC 7 cut(s) 5, 160, 256, 262, 268, 382, 580
PflMI CCANNNNNTGG 1 cut(s) 846
PfoI TCCNGGA 1 cut(s) 411
PkrI GCNGC 7 cut(s) 132, 217, 247, 465, 778, 796, 799
PleI GAGTC 2 cut(s) 7, 1003
PpsI GAGTC 2 cut(s) 7, 1003
PpuMI RGGWCCY 1 cut(s) 314
PshAI GACNNNNGTC 2 cut(s) 237, 646
Psp124BI GAGCTC 1 cut(s) 192
Psp5II RGGWCCY 1 cut(s) 314
Psp6I CCWGG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 183
PspN4I GGNNCC 2 cut(s) 340, 512
PspPI GGNCC 6 cut(s) 314, 339, 522, 534, 648, 854
PspPPI RGGWCCY 1 cut(s) 314
PstI CTGCAG 1 cut(s) 750
PstNI CAGNNNCTG 1 cut(s) 797
PvuII CAGCTG 1 cut(s) 794
SacI GAGCTC 1 cut(s) 192
SalI GTCGAC 1 cut(s) 921
SaqAI TTAA 2 cut(s) 273, 980
SatI GCNGC 7 cut(s) 131, 216, 246, 464, 777, 795, 798
Sau3AI GATC 3 cut(s) 30, 202, 484
Sau96I GGNCC 6 cut(s) 314, 339, 522, 534, 648, 854
SchI GAGTC 2 cut(s) 7, 1004
ScrFI CCNGG 3 cut(s) 185, 413, 558
SduI GDGCHC 4 cut(s) 23, 192, 198, 420
SetI ASST 9 cut(s) 45, 192, 316, 589, 663, 796, 826, 928, 1004
SfcI CTRYAG 2 cut(s) 249, 746
SfuI TTCGAA 1 cut(s) 302
SinI GGWCC 3 cut(s) 314, 648, 854
SmiI ATTTAAAT 1 cut(s) 981
SmlI CTYRAG 2 cut(s) 38, 501
SmoI CTYRAG 2 cut(s) 38, 501
Sse9I AATT 5 cut(s) 361, 719, 732, 754, 976
SseBI AGGCCT 1 cut(s) 742
SsiI CCGC 4 cut(s) 96, 131, 207, 463
SspMI CTAG 5 cut(s) 237, 318, 738, 807, 1003
SstI GAGCTC 1 cut(s) 192
StuI AGGCCT 1 cut(s) 742
StyD4I CCNGG 3 cut(s) 183, 411, 556
StyI CCWWGG 3 cut(s) 317, 651, 737
SwaI ATTTAAAT 1 cut(s) 981
TaaI ACNGT 2 cut(s) 349, 443
TaqI TCGA 5 cut(s) 302, 470, 583, 922, 998
TaqII GACCGA 1 cut(s) 636
TasI AATT 5 cut(s) 361, 719, 732, 754, 976
TauI GCSGC 2 cut(s) 133, 466
TfiI GAWTC 7 cut(s) 5, 160, 256, 262, 268, 382, 580
Tru1I TTAA 2 cut(s) 273, 980
Tru9I TTAA 2 cut(s) 273, 980
TscAI CASTG 2 cut(s) 352, 359
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 5 cut(s) 215, 245, 776, 794, 797
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 1 cut(s) 714
TspGWI ACGGA 2 cut(s) 109, 322
TspRI CASTG 2 cut(s) 352, 359
Van91I CCANNNNNTGG 1 cut(s) 846
VpaK11BI GGWCC 3 cut(s) 314, 648, 854
XapI RAATTY 1 cut(s) 732
XcmI CCANNNNNNNNNTGG 1 cut(s) 558
XmaJI CCTAGG 2 cut(s) 317, 737
XmiI GTMKAC 1 cut(s) 922
XspI CTAG 5 cut(s) 237, 318, 738, 807, 1003
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.