Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0003822

Physical Location & Seq

Genomic Coordinates Reverse (-)

14236097 .. 14237605

Gene Structure 1509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G006770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGATCAGCCACCTCCCGGCTGGCAACGGCCACTCACGATTCAAGGTGCAGGAAGCACCAAGTTTTTATTATCAAGCTCTGTTGGGCAAGAGACTTCGATCCATGGTGGAAGTCCAAAAGTATTTGATTGAACATCCTGAGTATATGGTGGATGGGCTATCTATGGCACAATTTTCATTTCAAATTCCAAGGCCTCTGCAGGAGAATTATGTGAGGAAACGCCCTGCCGCTTCTCGTTTGACAGCAGCTGCCCTTGCCAGTAGAACTCTTGAACCTACTGAAGCAAATCCCATAGCATGGGCTGGTCCAGATGATACAGAGTTGCTACTTGGTTCTCCGTACTTGGAGGCTCATGTGTTTGACCCTGTTGGTCGACCTACAAAGAAGCGAGCCAAAACAAGAACTCCATCAAGGGTCTACAATAGTAGTTTAAATATCAGCAGAGAGTCGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008327 GO:0019899 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD zf-CW

Protein Analysis

151

Amino Acids

16.97

Weight (kDa)

9.74

Isoelectric Point (pI)

58.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35330 AT5G35330 AT5G35330 AT5G35330
fragaria_vesca	FvH4_4g06240 FvH4_4g06240 FvH4_4g06240 FvH4_4g06240 FvH4_4g06240
malus_domestica	MD13G1234700.v1.1 MD16G1239500.v1.1
prunus_persica	Prupe.1G065600_v2.0.a1 Prupe.1G065600_v2.0.a1
pyrus_communis	pycom16g20040
rosa_chinensis	RchiOBHm_Chr4g0397961
rosa_laevigata	RLG00000009392
rosa_multiflora	Rmu_co8227835.1_g000001 Rmu_co8419633.1_g000001 Rmu_sc0001074.1_g000002 Rmu_sc0001074.1_g000005 Rmu_sc0003773.1_g000027
rosa_roxburghii	Rroxscaffold_5G00342870 Rroxscaffold_5G00342930
rosa_rugosa	Rorug04G0004900 Rorug04G0005000
rosa_samantha	Rh4AG081200 Rh4AG081600 Rh4BG079200 Rh4CG088800 Rh4CG089100 Rh4DG074700
rosa_wichuraiana	Rw0G019360 Rw4G006770 Rw4G006790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	297
AccI	GTMKAC	2 cut(s)	373, 417
AciI	CCGC	1 cut(s)	228
AclWI	GGATC	1 cut(s)	93
AcoI	YGGCCR	1 cut(s)	28
AcsI	RAATTY	1 cut(s)	183
AcuI	CTGAAG	1 cut(s)	300
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	2 cut(s)	16, 297
AgsI	TTSAA	4 cut(s)	43, 131, 182, 272
AluBI	AGCT	3 cut(s)	77, 248, 453
AluI	AGCT	3 cut(s)	77, 248, 453
Alw26I	GTCTC	1 cut(s)	85
AlwI	GGATC	1 cut(s)	93
AlwNI	CAGNNNCTG	1 cut(s)	248
AoxI	GGCC	2 cut(s)	28, 191
ApeKI	GCWGC	2 cut(s)	245, 248
ApoI	RAATTY	1 cut(s)	183
AspS9I	GGNCC	1 cut(s)	305
AsuC2I	CCSGG	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	305
BbvI	GCAGC	2 cut(s)	235, 257
BccI	CCATC	2 cut(s)	146, 415
BceAI	ACGGC	1 cut(s)	43
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	17
BcoDI	GTCTC	1 cut(s)	85
BfaI	CTAG	1 cut(s)	454
BfmI	CTRYAG	1 cut(s)	197
BisI	GCNGC	3 cut(s)	228, 246, 249
BlsI	GCNGC	3 cut(s)	229, 247, 250
Bme1390I	CCNGG	1 cut(s)	17
Bme18I	GGWCC	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	305
BmrFI	CCNGG	1 cut(s)	17
BpuMI	CCSGG	1 cut(s)	17
BsaJI	CCNNGG	2 cut(s)	102, 188
BsaXI	ACNNNNNCTCC	2 cut(s)	388, 418
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 297
Bse1I	ACTGG	1 cut(s)	258
BseDI	CCNNGG	2 cut(s)	102, 188
BseGI	GGATG	2 cut(s)	133, 157
BseLI	CCNNNNNNNGG	2 cut(s)	16, 297
BseMII	CTCAG	1 cut(s)	129
BseNI	ACTGG	1 cut(s)	258
BseXI	GCAGC	2 cut(s)	235, 257
BsgI	GTGCAG	1 cut(s)	68
BshFI	GGCC	2 cut(s)	30, 193
BsiSI	CCGG	1 cut(s)	17
BslI	CCNNNNNNNGG	2 cut(s)	16, 297
BsmAI	GTCTC	1 cut(s)	85
BsnI	GGCC	2 cut(s)	30, 193
Bsp143I	GATC	2 cut(s)	3, 98
Bsp19I	CCATGG	1 cut(s)	102
BspACI	CCGC	1 cut(s)	228
BspANI	GGCC	2 cut(s)	30, 193
BspCNI	CTCAG	1 cut(s)	130
BspMAI	CTGCAG	1 cut(s)	201
BspPI	GGATC	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	258
BssECI	CCNNGG	2 cut(s)	102, 188
BssMI	GATC	2 cut(s)	3, 98
BssT1I	CCWWGG	2 cut(s)	102, 188
BstC8I	GCNNGC	2 cut(s)	22, 390
BstDEI	CTNAG	1 cut(s)	138
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	2 cut(s)	133, 157
BstKTI	GATC	2 cut(s)	6, 101
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	2 cut(s)	3, 98
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstSCI	CCNGG	1 cut(s)	15
BstSFI	CTRYAG	1 cut(s)	197
BstV1I	GCAGC	2 cut(s)	235, 257
BsuRI	GGCC	2 cut(s)	30, 193
BtgI	CCRYGG	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	133, 157
Cac8I	GCNNGC	2 cut(s)	22, 390
CaiI	CAGNNNCTG	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	305
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	3 cut(s)	103, 297, 353
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	2 cut(s)	5, 100
DpnII	GATC	2 cut(s)	3, 98
DraI	TTTAAA	1 cut(s)	432
EaeI	YGGCCR	1 cut(s)	28
Eco130I	CCWWGG	2 cut(s)	102, 188
Eco147I	AGGCCT	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	305
Eco57I	CTGAAG	1 cut(s)	300
EcoT14I	CCWWGG	2 cut(s)	102, 188
ErhI	CCWWGG	2 cut(s)	102, 188
FaeI	CATG	3 cut(s)	106, 300, 356
FaiI	YATR	8 cut(s)	104, 144, 146, 164, 210, 293, 298, 354
FatI	CATG	3 cut(s)	102, 296, 352
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	2 cut(s)	373, 417
Fnu4HI	GCNGC	3 cut(s)	228, 246, 249
FokI	GGATG	2 cut(s)	120, 164
Fsp4HI	GCNGC	3 cut(s)	228, 246, 249
FspBI	CTAG	1 cut(s)	454
GluI	GCNGC	3 cut(s)	228, 246, 249
HaeIII	GGCC	2 cut(s)	30, 193
HapII	CCGG	1 cut(s)	17
Hin1II	CATG	3 cut(s)	106, 300, 356
HincII	GTYRAC	1 cut(s)	374
HindII	GTYRAC	1 cut(s)	374
HinfI	GANTC	2 cut(s)	39, 446
HpaII	CCGG	1 cut(s)	17
Hpy166II	GTNNAC	2 cut(s)	374, 418
Hpy188III	TCNNGA	4 cut(s)	36, 137, 269, 308
Hpy8I	GTNNAC	2 cut(s)	374, 418
HpyCH4V	TGCA	2 cut(s)	49, 199
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	1 cut(s)	138
Hsp92II	CATG	3 cut(s)	106, 300, 356
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 98
Lsp1109I	GCAGC	2 cut(s)	235, 257
MaeI	CTAG	1 cut(s)	454
MalI	GATC	2 cut(s)	5, 100
MboI	GATC	2 cut(s)	3, 98
MluCI	AATT	3 cut(s)	170, 183, 205
MlyI	GAGTC	1 cut(s)	455
MnlI	CCTC	4 cut(s)	23, 204, 207, 340
MseI	TTAA	1 cut(s)	431
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	1 cut(s)	17
MspR9I	CCNGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	254
NciI	CCSGG	1 cut(s)	17
NcoI	CCATGG	1 cut(s)	102
NdeII	GATC	2 cut(s)	3, 98
NlaIII	CATG	3 cut(s)	106, 300, 356
PceI	AGGCCT	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	39
PflMI	CCANNNNNTGG	1 cut(s)	297
PkrI	GCNGC	3 cut(s)	229, 247, 250
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
PspPI	GGNCC	1 cut(s)	305
PstI	CTGCAG	1 cut(s)	201
PstNI	CAGNNNCTG	1 cut(s)	248
PvuII	CAGCTG	1 cut(s)	248
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
SalI	GTCGAC	1 cut(s)	372
SaqAI	TTAA	1 cut(s)	431
SatI	GCNGC	3 cut(s)	228, 246, 249
Sau3AI	GATC	2 cut(s)	3, 98
Sau96I	GGNCC	1 cut(s)	305
SchI	GAGTC	1 cut(s)	455
ScrFI	CCNGG	1 cut(s)	17
SetI	ASST	7 cut(s)	15, 48, 79, 250, 277, 379, 455
SfcI	CTRYAG	1 cut(s)	197
SinI	GGWCC	1 cut(s)	305
Sse9I	AATT	3 cut(s)	170, 183, 205
SseBI	AGGCCT	1 cut(s)	193
SsiI	CCGC	1 cut(s)	228
SspMI	CTAG	1 cut(s)	454
StuI	AGGCCT	1 cut(s)	193
StyD4I	CCNGG	1 cut(s)	15
StyI	CCWWGG	2 cut(s)	102, 188
TaqI	TCGA	3 cut(s)	97, 373, 449
TasI	AATT	3 cut(s)	170, 183, 205
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	1 cut(s)	431
Tru9I	TTAA	1 cut(s)	431
TseI	GCWGC	2 cut(s)	245, 248
TspDTI	ATGAA	1 cut(s)	165
TspGWI	ACGGA	1 cut(s)	327
Van91I	CCANNNNNTGG	1 cut(s)	297
VpaK11BI	GGWCC	1 cut(s)	305
XapI	RAATTY	1 cut(s)	183
XcmI	CCANNNNNNNNNTGG	1 cut(s)	17
XmiI	GTMKAC	2 cut(s)	373, 417
XspI	CTAG	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.