Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003822

Physical Location & Seq

Genomic Coordinates Reverse (-)

918654 .. 920466

Gene Structure 1813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0005000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGACATGATTAACAGGTTGCCTGTGGAGTGCATCTCCCTCATCATATCCTTTACATCTCCGCGCGATGCCTGCAGATCATCAGTAGTCTCTCCTGTCTTGAGAATAGCTGGAGATTCTGATTTTGTCTGGGAGAGGTTTCTGCCTCAAGATTATGAGCAAATCATTTCGCAATCCCCGTCATCGTCGTCTTTGAACTCCATGTCCAAGAAGAATCTCTACTTTCGTCTTTGCAGTCACCCCATCATCATAAGCAATGGTAACATGAGCTTTGCACTAGAAAAGCAGAGCGGCAAGAAATGTTATATGGTATGCGCAAGAGGGCTTACAATTGCATGGGGAGATACACCCGCTTATTGGCATTGGATAACTCTACCACACTCCAGGTTTGCTGAAGTGGCTGAGCTCAAACTTGTATGGTGGCTGGACATCAAAGCATGCATAGAAACTAAGGATTTATCCCCAGGAACAACCTATGCAGCTTACCTTGTGTATCAGCTTTCACAACACAGATATGGATTTGAATCGCCTCTTGTGTCGCGTATCAGTTATCAACAAAGTGACGTAGTGACTGTGCATAGTGTGATCCTAGACCCTAGGCCTCCGCGACCGCGAGCTCGAGACAGAGGAGATGGGTGGATAGAGGTTGAGATAGGTGAATTTTTCGTTGAACAGGGAGACGATGATGATGTTGTAGAGTGCAGTGTGAAGGAAGTCAGTAACTCTAAGCGTGGCCTCATCGTTGAAGGTATTGAGGTGAGGCCTAAAGGGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008327 GO:0019899 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD zf-CW

Protein Analysis

258

Amino Acids

29.23

Weight (kDa)

5.78

Isoelectric Point (pI)

58.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2	PF14299	99 - 255	4e-48	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35330 AT5G35330 AT5G35330 AT5G35330
fragaria_vesca	FvH4_4g06240 FvH4_4g06240 FvH4_4g06240 FvH4_4g06240 FvH4_4g06240
malus_domestica	MD13G1234700.v1.1 MD16G1239500.v1.1
prunus_persica	Prupe.1G065600_v2.0.a1 Prupe.1G065600_v2.0.a1
pyrus_communis	pycom16g20040
rosa_chinensis	RchiOBHm_Chr4g0397961
rosa_laevigata	RLG00000009392
rosa_multiflora	Rmu_co8227835.1_g000001 Rmu_co8419633.1_g000001 Rmu_sc0001074.1_g000002 Rmu_sc0001074.1_g000005 Rmu_sc0003773.1_g000027
rosa_roxburghii	Rroxscaffold_5G00342870 Rroxscaffold_5G00342930
rosa_rugosa	Rorug04G0004900 Rorug04G0005000
rosa_samantha	Rh4AG081200 Rh4AG081600 Rh4BG079200 Rh4CG088800 Rh4CG089100 Rh4DG074700
rosa_wichuraiana	Rw0G019360 Rw4G006770 Rw4G006790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	316
AccBSI	CCGCTC	1 cut(s)	291
AccII	CGCG	5 cut(s)	64, 66, 541, 607, 613
AciI	CCGC	5 cut(s)	62, 291, 351, 605, 611
AclWI	GGATC	1 cut(s)	580
AcsI	RAATTY	1 cut(s)	659
AcuI	CTGAAG	1 cut(s)	414
AfiI	CCNNNNNNNGG	1 cut(s)	357
AgsI	TTSAA	4 cut(s)	196, 524, 671, 746
AjnI	CCWGG	2 cut(s)	383, 463
AloI	GAACNNNNNNTCC	2 cut(s)	188, 220
AluBI	AGCT	6 cut(s)	110, 270, 406, 482, 499, 617
AluI	AGCT	6 cut(s)	110, 270, 406, 482, 499, 617
Alw21I	GWGCWC	2 cut(s)	408, 619
Alw26I	GTCTC	3 cut(s)	94, 615, 672
AlwI	GGATC	1 cut(s)	580
Ama87I	CYCGRG	1 cut(s)	618
AoxI	GGCC	3 cut(s)	599, 733, 761
ApeKI	GCWGC	1 cut(s)	479
ApoI	RAATTY	1 cut(s)	659
AspA2I	CCTAGG	1 cut(s)	596
AspLEI	GCGC	2 cut(s)	66, 317
AsuHPI	GGTGA	3 cut(s)	230, 668, 769
AvaI	CYCGRG	1 cut(s)	618
AvrII	CCTAGG	1 cut(s)	596
BanII	GRGCYC	2 cut(s)	408, 619
BarI	GAAGNNNNNNTAC	2 cut(s)	203, 235
Bbv12I	GWGCWC	2 cut(s)	408, 619
BbvI	GCAGC	1 cut(s)	491
BccI	CCATC	2 cut(s)	251, 626
BciT130I	CCWGG	2 cut(s)	385, 465
BcoDI	GTCTC	3 cut(s)	94, 615, 672
BfaI	CTAG	3 cut(s)	278, 590, 597
BfmI	CTRYAG	1 cut(s)	73
BisI	GCNGC	2 cut(s)	292, 480
BlnI	CCTAGG	1 cut(s)	596
BlpI	GCTNAGC	1 cut(s)	402
BlsI	GCNGC	2 cut(s)	293, 481
Bme1390I	CCNGG	2 cut(s)	385, 465
BmeT110I	CYCGRG	1 cut(s)	618
BmrFI	CCNGG	2 cut(s)	385, 465
BmsI	GCATC	2 cut(s)	42, 58
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpmI	CTGGAG	2 cut(s)	132, 367
Bpu1102I	GCTNAGC	1 cut(s)	402
BpuEI	CTTGAG	2 cut(s)	121, 132
BsaBI	GATNNNNATC	1 cut(s)	523
BsaJI	CCNNGG	2 cut(s)	463, 596
Bsc4I	CCNNNNNNNGG	1 cut(s)	357
Bse3DI	GCAATG	1 cut(s)	262
Bse8I	GATNNNNATC	1 cut(s)	523
BseBI	CCWGG	2 cut(s)	385, 465
BseDI	CCNNGG	2 cut(s)	463, 596
BseJI	GATNNNNATC	1 cut(s)	523
BseLI	CCNNNNNNNGG	1 cut(s)	357
BseMI	GCAATG	1 cut(s)	262
BseMII	CTCAG	1 cut(s)	393
BseRI	GAGGAG	1 cut(s)	642
BseXI	GCAGC	1 cut(s)	491
BsgI	GTGCAG	1 cut(s)	721
Bsh1236I	CGCG	5 cut(s)	64, 66, 541, 607, 613
Bsh1285I	CGRYCG	1 cut(s)	611
BshFI	GGCC	3 cut(s)	601, 735, 763
BsiEI	CGRYCG	1 cut(s)	611
BsiHKAI	GWGCWC	2 cut(s)	408, 619
BsiHKCI	CYCGRG	1 cut(s)	618
BslI	CCNNNNNNNGG	1 cut(s)	357
BsmAI	GTCTC	3 cut(s)	94, 615, 672
BsmBI	CGTCTC	1 cut(s)	672
BsnI	GGCC	3 cut(s)	601, 735, 763
BsoBI	CYCGRG	1 cut(s)	618
Bsp1286I	GDGCHC	2 cut(s)	408, 619
Bsp143I	GATC	2 cut(s)	77, 585
Bsp1720I	GCTNAGC	1 cut(s)	402
BspACI	CCGC	5 cut(s)	62, 291, 351, 605, 611
BspANI	GGCC	3 cut(s)	601, 735, 763
BspCNI	CTCAG	1 cut(s)	394
BspFNI	CGCG	5 cut(s)	64, 66, 541, 607, 613
BspMAI	CTGCAG	1 cut(s)	77
BspPI	GGATC	1 cut(s)	580
BsrBI	CCGCTC	1 cut(s)	291
BsrDI	GCAATG	1 cut(s)	262
BssECI	CCNNGG	2 cut(s)	463, 596
BssMI	GATC	2 cut(s)	77, 585
BssT1I	CCWWGG	1 cut(s)	596
Bst2UI	CCWGG	2 cut(s)	385, 465
Bst4CI	ACNGT	1 cut(s)	574
BstC8I	GCNNGC	3 cut(s)	73, 439, 615
BstDEI	CTNAG	3 cut(s)	402, 450, 726
BstFNI	CGCG	5 cut(s)	64, 66, 541, 607, 613
BstHHI	GCGC	2 cut(s)	66, 317
BstKTI	GATC	2 cut(s)	80, 588
BstMAI	GTCTC	3 cut(s)	94, 615, 672
BstMBI	GATC	2 cut(s)	77, 585
BstMCI	CGRYCG	1 cut(s)	611
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 398
BstNI	CCWGG	2 cut(s)	385, 465
BstNSI	RCATGY	1 cut(s)	441
BstSCI	CCNGG	2 cut(s)	383, 463
BstSFI	CTRYAG	1 cut(s)	73
BstUI	CGCG	5 cut(s)	64, 66, 541, 607, 613
BstV1I	GCAGC	1 cut(s)	491
BsuRI	GGCC	3 cut(s)	601, 735, 763
BtgZI	GCGATG	1 cut(s)	81
BtsI	GCAGTG	1 cut(s)	709
BtsIMutI	CAGTG	1 cut(s)	709
Cac8I	GCNNGC	3 cut(s)	73, 439, 615
CfoI	GCGC	2 cut(s)	66, 317
CviAII	CATG	5 cut(s)	7, 202, 265, 336, 438
DdeI	CTNAG	3 cut(s)	402, 450, 726
DpnI	GATC	2 cut(s)	79, 587
DpnII	GATC	2 cut(s)	77, 585
Ecl136II	GAGCTC	2 cut(s)	406, 617
Eco130I	CCWWGG	1 cut(s)	596
Eco147I	AGGCCT	2 cut(s)	601, 763
Eco24I	GRGCYC	2 cut(s)	408, 619
Eco53kI	GAGCTC	2 cut(s)	406, 617
Eco57I	CTGAAG	1 cut(s)	414
Eco88I	CYCGRG	1 cut(s)	618
EcoICRI	GAGCTC	2 cut(s)	406, 617
EcoRII	CCWGG	2 cut(s)	383, 463
EcoT14I	CCWWGG	1 cut(s)	596
EcoT22I	ATGCAT	1 cut(s)	443
EcoT38I	GRGCYC	2 cut(s)	408, 619
ErhI	CCWWGG	1 cut(s)	596
Esp3I	CGTCTC	1 cut(s)	672
FaeI	CATG	5 cut(s)	10, 205, 268, 339, 441
FatI	CATG	5 cut(s)	6, 201, 264, 335, 437
FauI	CCCGC	1 cut(s)	358
Fnu4HI	GCNGC	2 cut(s)	292, 480
FriOI	GRGCYC	2 cut(s)	408, 619
Fsp4HI	GCNGC	2 cut(s)	292, 480
FspBI	CTAG	3 cut(s)	278, 590, 597
FspI	TGCGCA	1 cut(s)	316
GlaI	GCGC	2 cut(s)	65, 316
GluI	GCNGC	2 cut(s)	292, 480
GsuI	CTGGAG	2 cut(s)	132, 367
HaeIII	GGCC	3 cut(s)	601, 735, 763
HhaI	GCGC	2 cut(s)	66, 317
Hin1II	CATG	5 cut(s)	10, 205, 268, 339, 441
Hin6I	GCGC	2 cut(s)	64, 315
HinP1I	GCGC	2 cut(s)	64, 315
HinfI	GANTC	3 cut(s)	116, 214, 524
HphI	GGTGA	3 cut(s)	230, 668, 769
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	3 cut(s)	100, 149, 620
Hpy99I	CGWCG	1 cut(s)	190
HpyAV	CCTTC	2 cut(s)	703, 740
HpyCH4III	ACNGT	1 cut(s)	574
HpyCH4IV	ACGT	1 cut(s)	564
HpyCH4V	TGCA	9 cut(s)	33, 75, 234, 275, 335, 441, 479, 577, 702
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 398
HpyF3I	CTNAG	3 cut(s)	402, 450, 726
HpySE526I	ACGT	1 cut(s)	564
Hsp92II	CATG	5 cut(s)	10, 205, 268, 339, 441
HspAI	GCGC	2 cut(s)	64, 315
Kzo9I	GATC	2 cut(s)	77, 585
Lsp1109I	GCAGC	1 cut(s)	491
LweI	GCATC	2 cut(s)	42, 58
MaeI	CTAG	3 cut(s)	278, 590, 597
MaeII	ACGT	1 cut(s)	564
MaeIII	GTNAC	5 cut(s)	236, 260, 560, 568, 719
MalI	GATC	2 cut(s)	79, 587
MbiI	CCGCTC	1 cut(s)	291
MboI	GATC	2 cut(s)	77, 585
MboII	GAAGA	1 cut(s)	223
MfeI	CAATTG	1 cut(s)	330
MhlI	GDGCHC	2 cut(s)	408, 619
MluCI	AATT	2 cut(s)	330, 659
Mph1103I	ATGCAT	1 cut(s)	443
MseI	TTAA	1 cut(s)	12
MslI	CAYNNNNRTG	1 cut(s)	513
MspR9I	CCNGG	2 cut(s)	385, 465
MunI	CAATTG	1 cut(s)	330
MvaI	CCWGG	2 cut(s)	385, 465
MvnI	CGCG	5 cut(s)	64, 66, 541, 607, 613
MwoI	GCNNNNNNNGC	2 cut(s)	72, 398
NdeII	GATC	2 cut(s)	77, 585
NlaIII	CATG	5 cut(s)	10, 205, 268, 339, 441
NmuCI	GTSAC	3 cut(s)	236, 560, 568
NsbI	TGCGCA	1 cut(s)	316
NsiI	ATGCAT	1 cut(s)	443
NspI	RCATGY	1 cut(s)	441
PaeI	GCATGC	1 cut(s)	441
PaeR7I	CTCGAG	1 cut(s)	618
PceI	AGGCCT	2 cut(s)	601, 763
PcsI	WCGNNNNNNNCGW	1 cut(s)	176
PfeI	GAWTC	3 cut(s)	116, 214, 524
PkrI	GCNGC	2 cut(s)	293, 481
Psp124BI	GAGCTC	2 cut(s)	408, 619
Psp6I	CCWGG	2 cut(s)	383, 463
PspGI	CCWGG	2 cut(s)	383, 463
PstI	CTGCAG	1 cut(s)	77
RseI	CAYNNNNRTG	1 cut(s)	513
SacI	GAGCTC	2 cut(s)	408, 619
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	2 cut(s)	292, 480
Sau3AI	GATC	2 cut(s)	77, 585
ScrFI	CCNGG	2 cut(s)	385, 465
SduI	GDGCHC	2 cut(s)	408, 619
SfaNI	GCATC	2 cut(s)	42, 58
SfcI	CTRYAG	1 cut(s)	73
Sfr274I	CTCGAG	1 cut(s)	618
SlaI	CTCGAG	1 cut(s)	618
SmiMI	CAYNNNNRTG	1 cut(s)	513
SmlI	CTYRAG	3 cut(s)	100, 147, 618
SmoI	CTYRAG	3 cut(s)	100, 147, 618
SphI	GCATGC	1 cut(s)	441
Sse9I	AATT	2 cut(s)	330, 659
SseBI	AGGCCT	2 cut(s)	601, 763
SsiI	CCGC	5 cut(s)	62, 291, 351, 605, 611
SspMI	CTAG	3 cut(s)	278, 590, 597
SstI	GAGCTC	2 cut(s)	408, 619
StuI	AGGCCT	2 cut(s)	601, 763
StyD4I	CCNGG	2 cut(s)	383, 463
StyI	CCWWGG	1 cut(s)	596
TaaI	ACNGT	1 cut(s)	574
TaiI	ACGT	1 cut(s)	567
TaqI	TCGA	1 cut(s)	619
TasI	AATT	2 cut(s)	330, 659
TauI	GCSGC	1 cut(s)	294
TfiI	GAWTC	3 cut(s)	116, 214, 524
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	1 cut(s)	709
TseFI	GTSAC	3 cut(s)	236, 560, 568
TseI	GCWGC	1 cut(s)	479
Tsp45I	GTSAC	3 cut(s)	236, 560, 568
TspRI	CASTG	1 cut(s)	709
XapI	RAATTY	1 cut(s)	659
XceI	RCATGY	1 cut(s)	441
XhoI	CTCGAG	1 cut(s)	618
XmaJI	CCTAGG	1 cut(s)	596
XspI	CTAG	3 cut(s)	278, 590, 597
Zsp2I	ATGCAT	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.