Rh4DG074700

methyl-CpG-binding domain-containing protein 2-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
11115805 .. 11118685
2881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG074700.1

Sequence Viewer

Length: 885 bp
ATGGAATCCACGACTCCTAGCCCTTGTAAGATCACCCTCAAGCTCAGAAGAGACGACGAACAAGAACAACAAGAGCCGAAAACGAACGACGACAAACCCGCCCAGTCTCCTTCGTCTTCCTCCGTCTCGTCGCCGCCGTCTTCCCCTTCCTCCTCCGACGAGATTCTCCAGTCCCATCTTCAATCCCAGGAGCTCGTGCTCTACGATCCTGCCGTCGCCGCTAATGCCGGCGGCGACGCCAATCGCGCTGCTACAGTGAATCGGATTCCGAATCTGAACAAATCCATTTCTCCGGTCTCGGTTTCGAATAGTCAAGGTCCTAGGGTTTTGCCGTCCGTCGGGGCCTTCACTGTGCAGTGCGCCAATTGCTTCAAGTGGAGGCTGATTCCGACGAAGGAGCAGTACGAGCAAATCCGGGAGCACATTCTGGAACGGCCGTTCTACTGTGAAACTGCAAAGGAATGGAGGCCGTCGATTTCGTGTGATGATCCGGCTGACATTACTCAAGACGGGAGCCGGCTCTGGGCCATTGATAGGCCCAACATTGCTCAGCCACCGCCCGGCTGGCAACGGCTACTCCGGATTCGAGGTGAAGGAAGCACCAAGTTTGCAGATGTTTATTATCAAGCGCCGTCGGGCAAGAGACTTCGATCCATGGTGGAGGTTCAAAAGTATTTGATTGAACATCCTGAGTATATGGTGGATGGGCTATCTATGGCACAATTTTCATTTCAAATTCCTAGGCCTCTGCAGGAGAATTATGTGAGGAAACGCCCTGCTGCTCCTCGTCTGACAGCTGCTGCCCATGCCAGTAGAACTCTTGAACCTACTGAAGGTGAGTATTTATATGCAATATATATACTCTGTTTCAATTCTTCTTTCTGA

Protein Analysis

294

Amino Acids

32.94

Weight (kDa)

6.46

Isoelectric Point (pI)

72.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CW PF07496 117 - 166 2.8e-11 CW-type Zinc Finger
MBD PF01429 186 - 246 1.1e-13 Methyl-CpG binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 246
AccIII TCCGGA 1 cut(s) 579
AciI CCGC 5 cut(s) 99, 134, 219, 231, 557
AclWI GGATC 3 cut(s) 200, 482, 645
AcoI YGGCCR 1 cut(s) 434
AcsI RAATTY 1 cut(s) 735
AcuI CTGAAG 1 cut(s) 852
AcyI GRCGYC 1 cut(s) 237
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 5 cut(s) 338, 523, 534, 560, 833
AgsI TTSAA 7 cut(s) 182, 373, 668, 683, 734, 824, 871
AjnI CCWGG 1 cut(s) 186
AloI GAACNNNNNNTCC 2 cut(s) 422, 454
AluBI AGCT 3 cut(s) 43, 193, 797
AluI AGCT 3 cut(s) 43, 193, 797
Alw21I GWGCWC 3 cut(s) 195, 201, 423
Alw26I GTCTC 5 cut(s) 45, 111, 130, 301, 637
AlwI GGATC 3 cut(s) 200, 482, 645
AlwNI CAGNNNCTG 1 cut(s) 800
Aor13HI TCCGGA 1 cut(s) 579
AoxI GGCC 6 cut(s) 342, 434, 467, 525, 536, 743
ApeKI GCWGC 4 cut(s) 248, 779, 797, 800
ApoI RAATTY 1 cut(s) 735
AspA2I CCTAGG 2 cut(s) 320, 740
AspLEI GCGC 3 cut(s) 248, 362, 631
AspS9I GGNCC 4 cut(s) 317, 342, 525, 537
AsuC2I CCSGG 2 cut(s) 416, 561
AsuHPI GGTGA 3 cut(s) 25, 602, 848
AsuII TTCGAA 1 cut(s) 305
AvaII GGWCC 1 cut(s) 317
AvrII CCTAGG 2 cut(s) 320, 740
BanII GRGCYC 1 cut(s) 195
BarI GAAGNNNNNNTAC 2 cut(s) 386, 418
BauI CACGAG 1 cut(s) 194
BbsI GAAGAC 2 cut(s) 108, 132
Bbv12I GWGCWC 3 cut(s) 195, 201, 423
BbvI GCAGC 4 cut(s) 235, 766, 784, 787
BccI CCATC 2 cut(s) 183, 698
BceAI ACGGC 8 cut(s) 121, 197, 316, 421, 449, 454, 587, 616
BciT130I CCWGG 1 cut(s) 188
BcnI CCSGG 2 cut(s) 416, 561
BcoDI GTCTC 5 cut(s) 45, 111, 130, 301, 637
BfaI CTAG 3 cut(s) 18, 321, 741
BfmI CTRYAG 2 cut(s) 252, 749
BfoI RGCGCY 1 cut(s) 632
BglI GCCNNNNNGGC 1 cut(s) 565
BisI GCNGC 7 cut(s) 134, 219, 232, 249, 780, 798, 801
BlnI CCTAGG 2 cut(s) 320, 740
BlpI GCTNAGC 1 cut(s) 549
BlsI GCNGC 7 cut(s) 135, 220, 233, 250, 781, 799, 802
Bme1390I CCNGG 3 cut(s) 188, 416, 561
Bme18I GGWCC 1 cut(s) 317
BmgT120I GGNCC 4 cut(s) 317, 342, 525, 537
BmiI GGNNCC 2 cut(s) 343, 515
BmrFI CCNGG 3 cut(s) 188, 416, 561
BmrI ACTGGG 1 cut(s) 97
BmuI ACTGGG 1 cut(s) 97
BpiI GAAGAC 2 cut(s) 108, 132
BpmI CTGGAG 1 cut(s) 152
Bpu1102I GCTNAGC 1 cut(s) 549
Bpu14I TTCGAA 1 cut(s) 305
BpuEI CTTGAG 2 cut(s) 23, 489
BpuMI CCSGG 2 cut(s) 416, 561
BsaHI GRCGYC 1 cut(s) 237
BsaI GGTCTC 1 cut(s) 301
BsaJI CCNNGG 4 cut(s) 186, 320, 654, 740
BsaWI WCCGGW 2 cut(s) 292, 579
BsaXI ACNNNNNCTCC 2 cut(s) 561, 591
Bsc4I CCNNNNNNNGG 5 cut(s) 338, 523, 534, 560, 833
Bse118I RCCGGY 2 cut(s) 227, 516
Bse1I ACTGG 3 cut(s) 103, 169, 810
Bse3DI GCAATG 1 cut(s) 543
BseAI TCCGGA 1 cut(s) 579
BseBI CCWGG 1 cut(s) 188
BseDI CCNNGG 4 cut(s) 186, 320, 654, 740
BseGI GGATG 2 cut(s) 685, 709
BseLI CCNNNNNNNGG 5 cut(s) 338, 523, 534, 560, 833
BseMI GCAATG 1 cut(s) 543
BseMII CTCAG 3 cut(s) 58, 563, 681
BseNI ACTGG 3 cut(s) 103, 169, 810
BseRI GAGGAG 2 cut(s) 142, 774
BseX3I CGGCCG 1 cut(s) 434
BseXI GCAGC 4 cut(s) 235, 766, 784, 787
BsgI GTGCAG 1 cut(s) 374
Bsh1236I CGCG 1 cut(s) 246
Bsh1285I CGRYCG 1 cut(s) 437
BshFI GGCC 6 cut(s) 344, 436, 469, 527, 538, 745
BsiEI CGRYCG 1 cut(s) 437
BsiHKAI GWGCWC 3 cut(s) 195, 201, 423
BsiSI CCGG 7 cut(s) 228, 293, 415, 491, 517, 561, 580
BslFI GGGAC 1 cut(s) 157
BslI CCNNNNNNNGG 5 cut(s) 338, 523, 534, 560, 833
BsmAI GTCTC 5 cut(s) 45, 111, 130, 301, 637
BsmBI CGTCTC 2 cut(s) 45, 130
BsmFI GGGAC 1 cut(s) 157
BsnI GGCC 6 cut(s) 344, 436, 469, 527, 538, 745
Bso31I GGTCTC 1 cut(s) 301
Bsp119I TTCGAA 1 cut(s) 305
Bsp1286I GDGCHC 3 cut(s) 195, 201, 423
Bsp13I TCCGGA 1 cut(s) 579
Bsp143I GATC 4 cut(s) 30, 205, 487, 650
Bsp1720I GCTNAGC 1 cut(s) 549
Bsp19I CCATGG 1 cut(s) 654
BspACI CCGC 5 cut(s) 99, 134, 219, 231, 557
BspANI GGCC 6 cut(s) 344, 436, 469, 527, 538, 745
BspCNI CTCAG 3 cut(s) 57, 562, 682
BspEI TCCGGA 1 cut(s) 579
BspFNI CGCG 1 cut(s) 246
BspLI GGNNCC 2 cut(s) 343, 515
BspMAI CTGCAG 1 cut(s) 753
BspPI GGATC 3 cut(s) 200, 482, 645
BspT104I TTCGAA 1 cut(s) 305
BspTNI GGTCTC 1 cut(s) 301
BsrDI GCAATG 1 cut(s) 543
BsrFI RCCGGY 2 cut(s) 227, 516
BsrI ACTGG 3 cut(s) 103, 169, 810
BssAI RCCGGY 2 cut(s) 227, 516
BssECI CCNNGG 4 cut(s) 186, 320, 654, 740
BssMI GATC 4 cut(s) 30, 205, 487, 650
BssNI GRCGYC 1 cut(s) 237
BssSI CACGAG 1 cut(s) 194
BssT1I CCWWGG 3 cut(s) 320, 654, 740
Bst2BI CACGAG 1 cut(s) 194
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 3 cut(s) 256, 352, 446
Bst6I CTCTTC 1 cut(s) 43
BstACI GRCGYC 1 cut(s) 237
BstBI TTCGAA 1 cut(s) 305
BstC8I GCNNGC 3 cut(s) 229, 518, 566
BstDEI CTNAG 3 cut(s) 44, 549, 690
BstDSI CCRYGG 1 cut(s) 654
BstENI CCTNNNNNAGG 1 cut(s) 831
BstF5I GGATG 2 cut(s) 685, 709
BstFNI CGCG 1 cut(s) 246
BstH2I RGCGCY 1 cut(s) 632
BstHHI GCGC 3 cut(s) 248, 362, 631
BstKTI GATC 4 cut(s) 33, 208, 490, 653
BstMAI GTCTC 5 cut(s) 45, 111, 130, 301, 637
BstMBI GATC 4 cut(s) 30, 205, 487, 650
BstMCI CGRYCG 1 cut(s) 437
BstMWI GCNNNNNNNGC 7 cut(s) 218, 224, 245, 366, 406, 565, 806
BstNI CCWGG 1 cut(s) 188
BstSCI CCNGG 3 cut(s) 186, 414, 559
BstSFI CTRYAG 2 cut(s) 252, 749
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 4 cut(s) 235, 766, 784, 787
BstV2I GAAGAC 2 cut(s) 108, 132
BstZI CGGCCG 1 cut(s) 434
BsuRI GGCC 6 cut(s) 344, 436, 469, 527, 538, 745
BtgI CCRYGG 1 cut(s) 654
BtsCI GGATG 2 cut(s) 685, 709
BtsI GCAGTG 1 cut(s) 362
BtsIMutI CAGTG 3 cut(s) 261, 348, 362
Cac8I GCNNGC 3 cut(s) 229, 518, 566
CaiI CAGNNNCTG 1 cut(s) 800
CfoI GCGC 3 cut(s) 248, 362, 631
Cfr10I RCCGGY 2 cut(s) 227, 516
Cfr13I GGNCC 4 cut(s) 317, 342, 525, 537
CseI GACGC 1 cut(s) 245
Csp6I GTAC 1 cut(s) 403
CviAII CATG 2 cut(s) 655, 806
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 3 cut(s) 44, 549, 690
DpnI GATC 4 cut(s) 32, 207, 489, 652
DpnII GATC 4 cut(s) 30, 205, 487, 650
EaeI YGGCCR 1 cut(s) 434
EagI CGGCCG 1 cut(s) 434
Eam1104I CTCTTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 43
Ecl136II GAGCTC 1 cut(s) 193
EclXI CGGCCG 1 cut(s) 434
Eco130I CCWWGG 3 cut(s) 320, 654, 740
Eco147I AGGCCT 1 cut(s) 745
Eco24I GRGCYC 1 cut(s) 195
Eco31I GGTCTC 1 cut(s) 301
Eco47I GGWCC 1 cut(s) 317
Eco52I CGGCCG 1 cut(s) 434
Eco53kI GAGCTC 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 852
EcoICRI GAGCTC 1 cut(s) 193
EcoNI CCTNNNNNAGG 1 cut(s) 831
EcoO109I RGGNCCY 2 cut(s) 317, 342
EcoRII CCWGG 1 cut(s) 186
EcoT14I CCWWGG 3 cut(s) 320, 654, 740
EcoT38I GRGCYC 1 cut(s) 195
ErhI CCWWGG 3 cut(s) 320, 654, 740
Esp3I CGTCTC 2 cut(s) 45, 130
FaeI CATG 2 cut(s) 658, 809
FaqI GGGAC 1 cut(s) 157
FatI CATG 2 cut(s) 654, 805
FauI CCCGC 1 cut(s) 106
Fnu4HI GCNGC 7 cut(s) 134, 219, 232, 249, 780, 798, 801
FokI GGATG 2 cut(s) 672, 716
FriOI GRGCYC 1 cut(s) 195
Fsp4HI GCNGC 7 cut(s) 134, 219, 232, 249, 780, 798, 801
FspBI CTAG 3 cut(s) 18, 321, 741
GlaI GCGC 3 cut(s) 247, 361, 630
GluI GCNGC 7 cut(s) 134, 219, 232, 249, 780, 798, 801
GsuI CTGGAG 1 cut(s) 152
HaeII RGCGCY 1 cut(s) 632
HaeIII GGCC 6 cut(s) 344, 436, 469, 527, 538, 745
HapII CCGG 7 cut(s) 228, 293, 415, 491, 517, 561, 580
HgaI GACGC 1 cut(s) 245
HhaI GCGC 3 cut(s) 248, 362, 631
Hin1I GRCGYC 1 cut(s) 237
Hin1II CATG 2 cut(s) 658, 809
Hin6I GCGC 3 cut(s) 246, 360, 629
HinP1I GCGC 3 cut(s) 246, 360, 629
HinfI GANTC 8 cut(s) 5, 13, 163, 259, 265, 271, 385, 583
HpaII CCGG 7 cut(s) 228, 293, 415, 491, 517, 561, 580
HphI GGTGA 3 cut(s) 25, 602, 848
Hpy188I TCNGA 8 cut(s) 47, 157, 264, 270, 276, 390, 792, 884
Hpy188III TCNNGA 5 cut(s) 428, 506, 580, 689, 821
HpyAV CCTTC 6 cut(s) 120, 156, 355, 388, 587, 827
HpyCH4III ACNGT 3 cut(s) 256, 352, 446
HpyCH4V TGCA 5 cut(s) 355, 455, 611, 751, 851
HpyF10VI GCNNNNNNNGC 7 cut(s) 218, 224, 245, 366, 406, 565, 806
HpyF3I CTNAG 3 cut(s) 44, 549, 690
Hsp92I GRCGYC 1 cut(s) 237
Hsp92II CATG 2 cut(s) 658, 809
HspAI GCGC 3 cut(s) 246, 360, 629
Kpn2I TCCGGA 1 cut(s) 579
KroI GCCGGC 2 cut(s) 227, 516
KroNI GCCGGC 2 cut(s) 229, 518
Kzo9I GATC 4 cut(s) 30, 205, 487, 650
LmnI GCTCC 5 cut(s) 190, 397, 418, 513, 787
Lsp1109I GCAGC 4 cut(s) 235, 766, 784, 787
MaeI CTAG 3 cut(s) 18, 321, 741
MalI GATC 4 cut(s) 32, 207, 489, 652
MboI GATC 4 cut(s) 30, 205, 487, 650
MboII GAAGA 5 cut(s) 60, 108, 132, 170, 867
MfeI CAATTG 1 cut(s) 364
MhlI GDGCHC 3 cut(s) 195, 201, 423
MluCI AATT 5 cut(s) 364, 722, 735, 757, 871
MlyI GAGTC 1 cut(s) 7
MmeI TCCRAC 2 cut(s) 180, 413
MroI TCCGGA 1 cut(s) 579
MroNI GCCGGC 2 cut(s) 227, 516
MspA1I CMGCKG 1 cut(s) 797
MspI CCGG 7 cut(s) 228, 293, 415, 491, 517, 561, 580
MspR9I CCNGG 3 cut(s) 188, 416, 561
MunI CAATTG 1 cut(s) 364
MvaI CCWGG 1 cut(s) 188
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 7 cut(s) 218, 224, 245, 366, 406, 565, 806
NaeI GCCGGC 2 cut(s) 229, 518
NciI CCSGG 2 cut(s) 416, 561
NcoI CCATGG 1 cut(s) 654
NdeII GATC 4 cut(s) 30, 205, 487, 650
NgoMIV GCCGGC 2 cut(s) 227, 516
NlaIII CATG 2 cut(s) 658, 809
NlaIV GGNNCC 2 cut(s) 343, 515
NspV TTCGAA 1 cut(s) 305
PceI AGGCCT 1 cut(s) 745
PcsI WCGNNNNNNNCGW 3 cut(s) 134, 201, 210
PdiI GCCGGC 2 cut(s) 229, 518
PfeI GAWTC 7 cut(s) 5, 163, 259, 265, 271, 385, 583
PfoI TCCNGGA 1 cut(s) 414
PkrI GCNGC 7 cut(s) 135, 220, 233, 250, 781, 799, 802
PleI GAGTC 1 cut(s) 7
PpsI GAGTC 1 cut(s) 7
PpuMI RGGWCCY 1 cut(s) 317
Psp124BI GAGCTC 1 cut(s) 195
Psp5II RGGWCCY 1 cut(s) 317
Psp6I CCWGG 1 cut(s) 186
PspGI CCWGG 1 cut(s) 186
PspN4I GGNNCC 2 cut(s) 343, 515
PspPI GGNCC 4 cut(s) 317, 342, 525, 537
PspPPI RGGWCCY 1 cut(s) 317
PstI CTGCAG 1 cut(s) 753
PstNI CAGNNNCTG 1 cut(s) 800
PvuII CAGCTG 1 cut(s) 797
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
SacI GAGCTC 1 cut(s) 195
SatI GCNGC 7 cut(s) 134, 219, 232, 249, 780, 798, 801
Sau3AI GATC 4 cut(s) 30, 205, 487, 650
Sau96I GGNCC 4 cut(s) 317, 342, 525, 537
SchI GAGTC 1 cut(s) 7
ScrFI CCNGG 3 cut(s) 188, 416, 561
SduI GDGCHC 3 cut(s) 195, 201, 423
SetI ASST 8 cut(s) 45, 195, 319, 592, 666, 799, 829, 838
SfcI CTRYAG 2 cut(s) 252, 749
SfuI TTCGAA 1 cut(s) 305
SinI GGWCC 1 cut(s) 317
SmlI CTYRAG 2 cut(s) 38, 504
SmoI CTYRAG 2 cut(s) 38, 504
Sse9I AATT 5 cut(s) 364, 722, 735, 757, 871
SseBI AGGCCT 1 cut(s) 745
SsiI CCGC 5 cut(s) 99, 134, 219, 231, 557
SspMI CTAG 3 cut(s) 18, 321, 741
SstI GAGCTC 1 cut(s) 195
StuI AGGCCT 1 cut(s) 745
StyD4I CCNGG 3 cut(s) 186, 414, 559
StyI CCWWGG 3 cut(s) 320, 654, 740
TaaI ACNGT 3 cut(s) 256, 352, 446
TaqI TCGA 4 cut(s) 305, 473, 586, 649
TasI AATT 5 cut(s) 364, 722, 735, 757, 871
TauI GCSGC 3 cut(s) 136, 221, 234
TfiI GAWTC 7 cut(s) 5, 163, 259, 265, 271, 385, 583
TscAI CASTG 3 cut(s) 261, 355, 362
TseI GCWGC 4 cut(s) 248, 779, 797, 800
TspDTI ATGAA 1 cut(s) 717
TspGWI ACGGA 2 cut(s) 112, 325
TspRI CASTG 3 cut(s) 261, 355, 362
VpaK11BI GGWCC 1 cut(s) 317
XagI CCTNNNNNAGG 1 cut(s) 831
XapI RAATTY 1 cut(s) 735
XcmI CCANNNNNNNNNTGG 1 cut(s) 561
XmaJI CCTAGG 2 cut(s) 320, 740
XspI CTAG 3 cut(s) 18, 321, 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.