FvH4_4g10933

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0012604
Physical Location & Seq
Reverse (-)
14622188 .. 14625100
2913 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g10933.t1

Sequence Viewer

Length: 339 bp
ATGGATAGGAGGCTCTTACAGAATAATGAGATCAGGAGCATGATTGATGCTCATCTTGGCGAGGGAATCAGCAATCATGTTACATTCCCTGAAGATATGACTGAATTGAGTATTTTCCATGTTGGAGCTGAGAAAATGACAGCCAGCAATGAGAGATCCAAGAGGATGACAAGAGAGATCAATTTGGGTTATGAAGATCCTTGTAGGGGTTATGTTCTTCTGTTCTTGTACGGGATTGTATTGGTTGATTTTCAAGTTCTCTCCGGTAGATCTAGTGATGGTCCTGGGTCACGTTTGGGTGGTGATGGTGGCGTCTCCGTACCTCTTGCTCCTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.33

Weight (kDa)

5.1

Isoelectric Point (pI)

42.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 150, 191
AcuI CTGAAG 1 cut(s) 111
AcyI GRCGYC 1 cut(s) 312
AfaI GTAC 2 cut(s) 230, 321
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 1 cut(s) 254
AjnI CCWGG 1 cut(s) 283
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
Alw26I GTCTC 1 cut(s) 319
AlwI GGATC 2 cut(s) 150, 191
AspS9I GGNCC 1 cut(s) 281
AsuHPI GGTGA 1 cut(s) 314
AvaII GGWCC 1 cut(s) 281
BccI CCATC 2 cut(s) 272, 299
BciT130I CCWGG 1 cut(s) 285
BcoDI GTCTC 1 cut(s) 319
BfaI CTAG 1 cut(s) 273
BglII AGATCT 1 cut(s) 269
Bme1390I CCNGG 1 cut(s) 285
Bme18I GGWCC 1 cut(s) 281
BmgT120I GGNCC 1 cut(s) 281
BmrFI CCNGG 1 cut(s) 285
BmsI GCATC 1 cut(s) 37
BsaBI GATNNNNATC 1 cut(s) 51
BsaHI GRCGYC 1 cut(s) 312
BsaJI CCNNGG 1 cut(s) 284
BsaWI WCCGGW 1 cut(s) 263
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse3DI GCAATG 1 cut(s) 154
Bse8I GATNNNNATC 1 cut(s) 51
BseBI CCWGG 1 cut(s) 285
BseDI CCNNGG 1 cut(s) 284
BseGI GGATG 1 cut(s) 171
BseJI GATNNNNATC 1 cut(s) 51
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMI GCAATG 1 cut(s) 154
BseMII CTCAG 1 cut(s) 120
BsiSI CCGG 1 cut(s) 264
BslI CCNNNNNNNGG 1 cut(s) 206
BsmAI GTCTC 1 cut(s) 319
BsmBI CGTCTC 1 cut(s) 319
Bsp143I GATC 5 cut(s) 30, 155, 177, 196, 269
BspCNI CTCAG 1 cut(s) 121
BspPI GGATC 2 cut(s) 150, 191
BsrDI GCAATG 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 284
BssMI GATC 5 cut(s) 30, 155, 177, 196, 269
BssNI GRCGYC 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 285
BstACI GRCGYC 1 cut(s) 312
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 1 cut(s) 129
BstF5I GGATG 1 cut(s) 171
BstKTI GATC 5 cut(s) 33, 158, 180, 199, 272
BstMAI GTCTC 1 cut(s) 319
BstMBI GATC 5 cut(s) 30, 155, 177, 196, 269
BstNI CCWGG 1 cut(s) 285
BstSCI CCNGG 1 cut(s) 283
BstX2I RGATCY 3 cut(s) 155, 196, 269
BstYI RGATCY 3 cut(s) 155, 196, 269
BtsCI GGATG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 145
Cfr13I GGNCC 1 cut(s) 281
CseI GACGC 1 cut(s) 301
Csp6I GTAC 2 cut(s) 229, 320
CviAII CATG 3 cut(s) 40, 77, 119
CviJI RGCY 3 cut(s) 13, 128, 143
CviKI_1 RGCY 3 cut(s) 13, 128, 143
CviQI GTAC 2 cut(s) 229, 320
DdeI CTNAG 1 cut(s) 129
DpnI GATC 5 cut(s) 32, 157, 179, 198, 271
DpnII GATC 5 cut(s) 30, 155, 177, 196, 269
Eco47I GGWCC 1 cut(s) 281
Eco57I CTGAAG 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 283
Esp3I CGTCTC 1 cut(s) 319
FaeI CATG 3 cut(s) 43, 80, 122
FaiI YATR 6 cut(s) 41, 78, 98, 120, 192, 213
FatI CATG 3 cut(s) 39, 76, 118
FokI GGATG 1 cut(s) 178
FspBI CTAG 1 cut(s) 273
HapII CCGG 1 cut(s) 264
HgaI GACGC 1 cut(s) 301
Hin1I GRCGYC 1 cut(s) 312
Hin1II CATG 3 cut(s) 43, 80, 122
HinfI GANTC 1 cut(s) 66
HpaII CCGG 1 cut(s) 264
HphI GGTGA 1 cut(s) 314
Hpy188III TCNNGA 2 cut(s) 34, 332
HpyCH4IV ACGT 1 cut(s) 292
HpyF3I CTNAG 1 cut(s) 129
HpySE526I ACGT 1 cut(s) 292
Hsp92I GRCGYC 1 cut(s) 312
Hsp92II CATG 3 cut(s) 43, 80, 122
Kzo9I GATC 5 cut(s) 30, 155, 177, 196, 269
LmnI GCTCC 3 cut(s) 36, 125, 334
LpnPI CCDG 6 cut(s) 19, 102, 157, 270, 277, 297
LweI GCATC 1 cut(s) 37
MaeI CTAG 1 cut(s) 273
MaeII ACGT 1 cut(s) 292
MaeIII GTNAC 2 cut(s) 79, 288
MalI GATC 5 cut(s) 32, 157, 179, 198, 271
MboI GATC 5 cut(s) 30, 155, 177, 196, 269
MboII GAAGA 3 cut(s) 104, 206, 209
MflI RGATCY 3 cut(s) 155, 196, 269
MluCI AATT 2 cut(s) 104, 181
MmeI TCCRAC 1 cut(s) 103
MnlI CCTC 4 cut(s) 3, 55, 156, 333
MseI TTAA 1 cut(s) 337
MspI CCGG 1 cut(s) 264
MspR9I CCNGG 1 cut(s) 285
MvaI CCWGG 1 cut(s) 285
NdeII GATC 5 cut(s) 30, 155, 177, 196, 269
NlaIII CATG 3 cut(s) 43, 80, 122
NmuCI GTSAC 1 cut(s) 288
PfeI GAWTC 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 283
PspGI CCWGG 1 cut(s) 283
PspPI GGNCC 1 cut(s) 281
PsuI RGATCY 3 cut(s) 155, 196, 269
RsaI GTAC 2 cut(s) 230, 321
RsaNI GTAC 2 cut(s) 229, 320
SaqAI TTAA 1 cut(s) 337
Sau3AI GATC 5 cut(s) 30, 155, 177, 196, 269
Sau96I GGNCC 1 cut(s) 281
ScrFI CCNGG 1 cut(s) 285
SetI ASST 3 cut(s) 130, 295, 325
SfaNI GCATC 1 cut(s) 37
SinI GGWCC 1 cut(s) 281
Sse9I AATT 2 cut(s) 104, 181
SspMI CTAG 1 cut(s) 273
StyD4I CCNGG 1 cut(s) 283
TaiI ACGT 1 cut(s) 295
TasI AATT 2 cut(s) 104, 181
TfiI GAWTC 1 cut(s) 66
Tru1I TTAA 1 cut(s) 337
Tru9I TTAA 1 cut(s) 337
TseFI GTSAC 1 cut(s) 288
Tsp45I GTSAC 1 cut(s) 288
TspDTI ATGAA 1 cut(s) 207
TspGWI ACGGA 1 cut(s) 307
VpaK11BI GGWCC 1 cut(s) 281
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.