Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012604

Physical Location & Seq

Genomic Coordinates Forward (+)

51569281 .. 51569796

Gene Structure 516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32836

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGTCTTTTCCATCATTTCTCTCTTCATTTTTTCTTTCCTACTATTTGACTCAAATCTCTGATTTTTCATGGTTAAGATGCACATCTTCCTCACGCATTGGACTTCCCTTCACCGATTGCTCCTTGGTCCATCGAAGCTCTGTTGTCAGCGTCACTTGGATTGTCTATTTAAACAGGGTTTTCCCGTTACAGCGCGTAAACCCGATGATTACGGTAGCGCAACAAGGGTCTGTATGGTCTTCGGCTGTCTGTCCCGTTGATCCCTCTGCGGATCAGATTTGGGTTATGGAGATCTATCGATGGGTTCTATGCTGCTGTTCTTGCACAGGATGGATTTGGTTGGACTCCAAGTTTTCGCCGGCCGGTCTGGTGACGTTTCTGTCACCTTTGGATTTGGCTGGTGGCGGCGACGTCACTACATCATCTCTCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

16.02

Weight (kDa)

5.54

Isoelectric Point (pI)

57.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012604)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g10933 FvH4_4g15741 FvH4_5g05121 FvH4_6g19273
rosa_chinensis	RchiOBHm_Chr1g0337621 RchiOBHm_Chr2g0156151 RchiOBHm_Chr2g0169831 RchiOBHm_Chr3g0449881 RchiOBHm_Chr5g0050841 RchiOBHm_Chr6g0262191 RchiOBHm_Chr6g0312951
rosa_laevigata	RLG00000013410 RLG00000014407 RLG00000028421 RLG00000036361
rosa_multiflora	Rmu_sc0000293.1_g000034
rosa_roxburghii	Rroxscaffold_1G00053350 Rroxscaffold_4G00302710 Rroxscaffold_5G00344970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	379
AatII	GACGTC	1 cut(s)	414
AccII	CGCG	1 cut(s)	195
AciI	CCGC	2 cut(s)	269, 405
AclWI	GGATC	2 cut(s)	254, 279
AcoI	YGGCCR	1 cut(s)	360
AcyI	GRCGYC	1 cut(s)	411
AluBI	AGCT	1 cut(s)	138
AluI	AGCT	1 cut(s)	138
AlwI	GGATC	2 cut(s)	254, 279
AoxI	GGCC	1 cut(s)	360
ApeKI	GCWGC	1 cut(s)	312
AspLEI	GCGC	2 cut(s)	195, 220
AspS9I	GGNCC	1 cut(s)	127
AsuHPI	GGTGA	3 cut(s)	103, 375, 382
AvaII	GGWCC	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	299
BccI	CCATC	4 cut(s)	19, 138, 294, 324
BfaI	CTAG	1 cut(s)	433
BglII	AGATCT	1 cut(s)	291
BisI	GCNGC	2 cut(s)	313, 406
BlsI	GCNGC	2 cut(s)	314, 407
Bme18I	GGWCC	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	127
BmsI	GCATC	1 cut(s)	68
BpiI	GAAGAC	1 cut(s)	231
Bsa29I	ATCGAT	1 cut(s)	298
BsaBI	GATNNNNATC	1 cut(s)	82
BsaHI	GRCGYC	1 cut(s)	411
BsaJI	CCNNGG	1 cut(s)	123
Bse118I	RCCGGY	2 cut(s)	358, 362
Bse8I	GATNNNNATC	1 cut(s)	82
BseCI	ATCGAT	1 cut(s)	298
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	1 cut(s)	335
BseJI	GATNNNNATC	1 cut(s)	82
BseX3I	CGGCCG	1 cut(s)	360
BseXI	GCAGC	1 cut(s)	299
Bsh1236I	CGCG	1 cut(s)	195
Bsh1285I	CGRYCG	1 cut(s)	363
BshFI	GGCC	1 cut(s)	362
BshVI	ATCGAT	1 cut(s)	298
BsiEI	CGRYCG	1 cut(s)	363
BsiSI	CCGG	2 cut(s)	359, 363
BslFI	GGGAC	1 cut(s)	237
BsmFI	GGGAC	1 cut(s)	237
BsnI	GGCC	1 cut(s)	362
Bsp143I	GATC	3 cut(s)	259, 271, 291
BspACI	CCGC	2 cut(s)	269, 405
BspANI	GGCC	1 cut(s)	362
BspDI	ATCGAT	1 cut(s)	298
BspFNI	CGCG	1 cut(s)	195
BspPI	GGATC	2 cut(s)	254, 279
BsrFI	RCCGGY	2 cut(s)	358, 362
BssAI	RCCGGY	2 cut(s)	358, 362
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	3 cut(s)	259, 271, 291
BssNI	GRCGYC	1 cut(s)	411
BssT1I	CCWWGG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	1 cut(s)	28
BstACI	GRCGYC	1 cut(s)	411
BstC8I	GCNNGC	1 cut(s)	360
BstF5I	GGATG	1 cut(s)	335
BstFNI	CGCG	1 cut(s)	195
BstHHI	GCGC	2 cut(s)	195, 220
BstKTI	GATC	3 cut(s)	262, 274, 294
BstMBI	GATC	3 cut(s)	259, 271, 291
BstMCI	CGRYCG	1 cut(s)	363
BstMWI	GCNNNNNNNGC	1 cut(s)	321
BstUI	CGCG	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	299
BstV2I	GAAGAC	1 cut(s)	231
BstX2I	RGATCY	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	291
BstZI	CGGCCG	1 cut(s)	360
Bsu15I	ATCGAT	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	362
BsuTUI	ATCGAT	1 cut(s)	298
BtsCI	GGATG	1 cut(s)	335
Cac8I	GCNNGC	1 cut(s)	360
CfoI	GCGC	2 cut(s)	195, 220
Cfr10I	RCCGGY	2 cut(s)	358, 362
Cfr13I	GGNCC	1 cut(s)	127
ClaI	ATCGAT	1 cut(s)	298
CseI	GACGC	1 cut(s)	139
CviAII	CATG	1 cut(s)	69
CviJI	RGCY	4 cut(s)	138, 245, 362, 398
CviKI_1	RGCY	4 cut(s)	138, 245, 362, 398
DpnI	GATC	3 cut(s)	261, 273, 293
DpnII	GATC	3 cut(s)	259, 271, 291
DraI	TTTAAA	1 cut(s)	171
DrdI	GACNNNNNNGTC	1 cut(s)	379
DseDI	GACNNNNNNGTC	1 cut(s)	379
EaeI	YGGCCR	1 cut(s)	360
EagI	CGGCCG	1 cut(s)	360
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
EclXI	CGGCCG	1 cut(s)	360
Eco130I	CCWWGG	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	127
Eco52I	CGGCCG	1 cut(s)	360
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	1 cut(s)	72
FaiI	YATR	4 cut(s)	70, 235, 287, 310
FaqI	GGGAC	1 cut(s)	237
FatI	CATG	1 cut(s)	68
Fnu4HI	GCNGC	2 cut(s)	313, 406
FokI	GGATG	1 cut(s)	342
Fsp4HI	GCNGC	2 cut(s)	313, 406
FspBI	CTAG	1 cut(s)	433
GlaI	GCGC	2 cut(s)	194, 219
GluI	GCNGC	2 cut(s)	313, 406
HaeIII	GGCC	1 cut(s)	362
HapII	CCGG	2 cut(s)	359, 363
HgaI	GACGC	1 cut(s)	139
HhaI	GCGC	2 cut(s)	195, 220
Hin1I	GRCGYC	1 cut(s)	411
Hin1II	CATG	1 cut(s)	72
Hin6I	GCGC	2 cut(s)	193, 218
HinP1I	GCGC	2 cut(s)	193, 218
HinfI	GANTC	2 cut(s)	49, 344
HpaII	CCGG	2 cut(s)	359, 363
HphI	GGTGA	3 cut(s)	103, 375, 382
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	2 cut(s)	61, 276
Hpy8I	GTNNAC	1 cut(s)	199
Hpy99I	CGWCG	1 cut(s)	413
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4IV	ACGT	2 cut(s)	374, 411
HpyCH4V	TGCA	2 cut(s)	81, 324
HpyF10VI	GCNNNNNNNGC	1 cut(s)	321
HpySE526I	ACGT	2 cut(s)	374, 411
Hsp92I	GRCGYC	1 cut(s)	411
Hsp92II	CATG	1 cut(s)	72
HspAI	GCGC	2 cut(s)	193, 218
KroI	GCCGGC	1 cut(s)	358
KroNI	GCCGGC	1 cut(s)	360
Kzo9I	GATC	3 cut(s)	259, 271, 291
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	6 cut(s)	160, 312, 353, 372, 376, 384
Lsp1109I	GCAGC	1 cut(s)	299
LweI	GCATC	1 cut(s)	68
MaeI	CTAG	1 cut(s)	433
MaeII	ACGT	2 cut(s)	374, 411
MaeIII	GTNAC	5 cut(s)	151, 186, 370, 381, 412
MalI	GATC	3 cut(s)	261, 273, 293
MboI	GATC	3 cut(s)	259, 271, 291
MboII	GAAGA	3 cut(s)	15, 78, 231
MflI	RGATCY	1 cut(s)	291
MlyI	GAGTC	2 cut(s)	43, 338
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	2 cut(s)	100, 274
MroNI	GCCGGC	1 cut(s)	358
MseI	TTAA	2 cut(s)	74, 170
MspI	CCGG	2 cut(s)	359, 363
MvnI	CGCG	1 cut(s)	195
MwoI	GCNNNNNNNGC	1 cut(s)	321
NaeI	GCCGGC	1 cut(s)	360
NdeII	GATC	3 cut(s)	259, 271, 291
NgoMIV	GCCGGC	1 cut(s)	358
NlaIII	CATG	1 cut(s)	72
NmuCI	GTSAC	4 cut(s)	151, 370, 381, 412
PdiI	GCCGGC	1 cut(s)	360
PkrI	GCNGC	2 cut(s)	314, 407
PleI	GAGTC	2 cut(s)	43, 338
PpsI	GAGTC	2 cut(s)	43, 338
PspPI	GGNCC	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	291
SaqAI	TTAA	2 cut(s)	74, 170
SatI	GCNGC	2 cut(s)	313, 406
Sau3AI	GATC	3 cut(s)	259, 271, 291
Sau96I	GGNCC	1 cut(s)	127
SchI	GAGTC	2 cut(s)	43, 338
SetI	ASST	4 cut(s)	140, 377, 388, 414
SfaNI	GCATC	1 cut(s)	68
SinI	GGWCC	1 cut(s)	127
SsiI	CCGC	2 cut(s)	269, 405
SspMI	CTAG	1 cut(s)	433
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	214
TaiI	ACGT	2 cut(s)	377, 414
TaqI	TCGA	2 cut(s)	133, 298
TauI	GCSGC	1 cut(s)	408
Tru1I	TTAA	2 cut(s)	74, 170
Tru9I	TTAA	2 cut(s)	74, 170
TseFI	GTSAC	4 cut(s)	151, 370, 381, 412
TseI	GCWGC	1 cut(s)	312
Tsp45I	GTSAC	4 cut(s)	151, 370, 381, 412
TspDTI	ATGAA	2 cut(s)	15, 57
VpaK11BI	GGWCC	1 cut(s)	127
XspI	CTAG	1 cut(s)	433
ZraI	GACGTC	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.