RchiOBHm_Chr6g0312951

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0012604
Physical Location & Seq
Forward (+)
69555319 .. 69556100
782 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28155

Sequence Viewer

Length: 435 bp
ATGTCCTTCCCATCATTTCTCTCTTTACTTTTTCTTTCCTTCTCTTTGTCTCAAATCTTTGATTCTTCATGGTTAAGATGCACATCCTCCTCACCCACCGGACTTCACTTCACCGATCGCTCCGTGGTCAATCGGAGCTCTGTCGTTGGTGTCGCTTGGATTGTCTGTTTAAAAGGAATTTTCCCGTCACCGCGCGTTAACTCGTTAATTACGGTAGTGCAACAAGGGTCTGCGGCTGTCTGTCCCTTTGATCCCTCTGCGGATCGAGATTTGGGTTATGGAGATATCTCGATGGGGTCTATGCTGCTGTTCTTGCATGAGATTGTTTTGGTTGGACTCCAAGTTTTCGCCGGCCGATCTGGTGACGTTTATGTGTCACTTTTGGGGTTGTTTGGTGGCGGCGTCGTCGTCACTACATCATCTCTCTTCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.35

Weight (kDa)

5.99

Isoelectric Point (pI)

50.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 193, 195
AciI CCGC 4 cut(s) 191, 233, 260, 399
AclWI GGATC 2 cut(s) 245, 270
AcoI YGGCCR 1 cut(s) 352
AcsI RAATTY 1 cut(s) 177
AcyI GRCGYC 1 cut(s) 402
AluBI AGCT 1 cut(s) 138
AluI AGCT 1 cut(s) 138
Alw21I GWGCWC 1 cut(s) 140
Alw26I GTCTC 1 cut(s) 54
AlwI GGATC 2 cut(s) 245, 270
AoxI GGCC 1 cut(s) 352
ApeKI GCWGC 1 cut(s) 304
ApoI RAATTY 1 cut(s) 177
AspLEI GCGC 1 cut(s) 195
AsuHPI GGTGA 4 cut(s) 84, 103, 180, 374
BanII GRGCYC 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 140
BbvI GCAGC 1 cut(s) 291
BccI CCATC 2 cut(s) 19, 286
BcoDI GTCTC 1 cut(s) 54
BisI GCNGC 3 cut(s) 234, 305, 400
BlsI GCNGC 3 cut(s) 235, 306, 401
BmsI GCATC 1 cut(s) 68
BsaBI GATNNNNATC 1 cut(s) 82
BsaHI GRCGYC 1 cut(s) 402
BsaJI CCNNGG 1 cut(s) 123
BsaWI WCCGGW 1 cut(s) 98
Bse118I RCCGGY 1 cut(s) 350
Bse8I GATNNNNATC 1 cut(s) 82
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 83
BseJI GATNNNNATC 1 cut(s) 82
BseRI GAGGAG 1 cut(s) 79
BseX3I CGGCCG 1 cut(s) 352
BseXI GCAGC 1 cut(s) 291
Bsh1236I CGCG 2 cut(s) 193, 195
Bsh1285I CGRYCG 2 cut(s) 118, 355
BshFI GGCC 1 cut(s) 354
BsiEI CGRYCG 2 cut(s) 118, 355
BsiHKAI GWGCWC 1 cut(s) 140
BsiSI CCGG 2 cut(s) 99, 351
BslFI GGGAC 1 cut(s) 228
BsmAI GTCTC 1 cut(s) 54
BsmFI GGGAC 1 cut(s) 228
BsnI GGCC 1 cut(s) 354
Bsp1286I GDGCHC 1 cut(s) 140
Bsp143I GATC 4 cut(s) 115, 250, 262, 356
BspACI CCGC 4 cut(s) 191, 233, 260, 399
BspANI GGCC 1 cut(s) 354
BspFNI CGCG 2 cut(s) 193, 195
BspPI GGATC 2 cut(s) 245, 270
BsrFI RCCGGY 1 cut(s) 350
BssAI RCCGGY 1 cut(s) 350
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 4 cut(s) 115, 250, 262, 356
BssNI GRCGYC 1 cut(s) 402
Bst4CI ACNGT 1 cut(s) 214
Bst6I CTCTTC 1 cut(s) 431
BstACI GRCGYC 1 cut(s) 402
BstC8I GCNNGC 1 cut(s) 352
BstDSI CCRYGG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 83
BstFNI CGCG 2 cut(s) 193, 195
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 4 cut(s) 118, 253, 265, 359
BstMAI GTCTC 1 cut(s) 54
BstMBI GATC 4 cut(s) 115, 250, 262, 356
BstMCI CGRYCG 2 cut(s) 118, 355
BstMWI GCNNNNNNNGC 1 cut(s) 313
BstUI CGCG 2 cut(s) 193, 195
BstV1I GCAGC 1 cut(s) 291
BstZI CGGCCG 1 cut(s) 352
BsuRI GGCC 1 cut(s) 354
BtgI CCRYGG 1 cut(s) 123
BtsCI GGATG 1 cut(s) 83
Cac8I GCNNGC 1 cut(s) 352
CfoI GCGC 1 cut(s) 195
Cfr10I RCCGGY 1 cut(s) 350
CseI GACGC 1 cut(s) 391
CviAII CATG 2 cut(s) 69, 317
CviJI RGCY 3 cut(s) 138, 236, 354
CviKI_1 RGCY 3 cut(s) 138, 236, 354
DpnI GATC 4 cut(s) 117, 252, 264, 358
DpnII GATC 4 cut(s) 115, 250, 262, 356
DraI TTTAAA 1 cut(s) 171
EaeI YGGCCR 1 cut(s) 352
EagI CGGCCG 1 cut(s) 352
Eam1104I CTCTTC 1 cut(s) 431
EarI CTCTTC 1 cut(s) 431
Ecl136II GAGCTC 1 cut(s) 138
EclXI CGGCCG 1 cut(s) 352
Eco24I GRGCYC 1 cut(s) 140
Eco32I GATATC 1 cut(s) 286
Eco52I CGGCCG 1 cut(s) 352
Eco53kI GAGCTC 1 cut(s) 138
EcoICRI GAGCTC 1 cut(s) 138
EcoRV GATATC 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 140
FaeI CATG 2 cut(s) 72, 320
FaiI YATR 5 cut(s) 70, 279, 302, 318, 372
FaqI GGGAC 1 cut(s) 228
FatI CATG 2 cut(s) 68, 316
Fnu4HI GCNGC 3 cut(s) 234, 305, 400
FokI GGATG 1 cut(s) 70
FriOI GRGCYC 1 cut(s) 140
Fsp4HI GCNGC 3 cut(s) 234, 305, 400
GlaI GCGC 1 cut(s) 194
GluI GCNGC 3 cut(s) 234, 305, 400
HaeIII GGCC 1 cut(s) 354
HapII CCGG 2 cut(s) 99, 351
HgaI GACGC 1 cut(s) 391
HhaI GCGC 1 cut(s) 195
Hin1I GRCGYC 1 cut(s) 402
Hin1II CATG 2 cut(s) 72, 320
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HinfI GANTC 2 cut(s) 62, 336
HpaI GTTAAC 1 cut(s) 199
HpaII CCGG 2 cut(s) 99, 351
HphI GGTGA 4 cut(s) 84, 103, 180, 374
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 1 cut(s) 135
Hpy188III TCNNGA 2 cut(s) 266, 289
Hpy8I GTNNAC 1 cut(s) 199
Hpy99I CGWCG 2 cut(s) 407, 410
HpyAV CCTTC 2 cut(s) 16, 49
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 1 cut(s) 366
HpyCH4V TGCA 3 cut(s) 81, 220, 316
HpyF10VI GCNNNNNNNGC 1 cut(s) 313
HpySE526I ACGT 1 cut(s) 366
Hsp92I GRCGYC 1 cut(s) 402
Hsp92II CATG 2 cut(s) 72, 320
HspAI GCGC 1 cut(s) 193
KroI GCCGGC 1 cut(s) 350
KroNI GCCGGC 1 cut(s) 352
KspAI GTTAAC 1 cut(s) 199
Kzo9I GATC 4 cut(s) 115, 250, 262, 356
LmnI GCTCC 2 cut(s) 125, 135
LpnPI CCDG 3 cut(s) 112, 345, 364
Lsp1109I GCAGC 1 cut(s) 291
LweI GCATC 1 cut(s) 68
MaeII ACGT 1 cut(s) 366
MaeIII GTNAC 4 cut(s) 186, 362, 375, 409
MalI GATC 4 cut(s) 117, 252, 264, 358
MboI GATC 4 cut(s) 115, 250, 262, 356
MboII GAAGA 2 cut(s) 57, 418
MhlI GDGCHC 1 cut(s) 140
MluCI AATT 2 cut(s) 177, 207
MlyI GAGTC 1 cut(s) 330
MmeI TCCRAC 1 cut(s) 313
MnlI CCTC 3 cut(s) 97, 100, 265
MroNI GCCGGC 1 cut(s) 350
MseI TTAA 4 cut(s) 74, 170, 198, 206
MspI CCGG 2 cut(s) 99, 351
MvnI CGCG 2 cut(s) 193, 195
MwoI GCNNNNNNNGC 1 cut(s) 313
NaeI GCCGGC 1 cut(s) 352
NdeII GATC 4 cut(s) 115, 250, 262, 356
NgoMIV GCCGGC 1 cut(s) 350
NlaIII CATG 2 cut(s) 72, 320
NmuCI GTSAC 4 cut(s) 186, 362, 375, 409
PdiI GCCGGC 1 cut(s) 352
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 3 cut(s) 235, 306, 401
Ple19I CGATCG 1 cut(s) 118
PleI GAGTC 1 cut(s) 330
PpsI GAGTC 1 cut(s) 330
Psp124BI GAGCTC 1 cut(s) 140
PvuI CGATCG 1 cut(s) 118
SacI GAGCTC 1 cut(s) 140
SaqAI TTAA 4 cut(s) 74, 170, 198, 206
SatI GCNGC 3 cut(s) 234, 305, 400
Sau3AI GATC 4 cut(s) 115, 250, 262, 356
SchI GAGTC 1 cut(s) 330
SduI GDGCHC 1 cut(s) 140
SetI ASST 2 cut(s) 140, 369
SfaNI GCATC 1 cut(s) 68
Sse9I AATT 2 cut(s) 177, 207
SsiI CCGC 4 cut(s) 191, 233, 260, 399
SstI GAGCTC 1 cut(s) 140
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 1 cut(s) 369
TaqI TCGA 2 cut(s) 265, 290
TasI AATT 2 cut(s) 177, 207
TauI GCSGC 2 cut(s) 236, 402
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 4 cut(s) 74, 170, 198, 206
Tru9I TTAA 4 cut(s) 74, 170, 198, 206
TseFI GTSAC 4 cut(s) 186, 362, 375, 409
TseI GCWGC 1 cut(s) 304
Tsp45I GTSAC 4 cut(s) 186, 362, 375, 409
TspDTI ATGAA 1 cut(s) 57
TspGWI ACGGA 1 cut(s) 112
XapI RAATTY 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.