RLG00000036361

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0012604
Physical Location & Seq
Forward (+)
79679403 .. 79680545
1143 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036361

Sequence Viewer

Length: 363 bp
ATGGGTTCTATGCTGCTGTACTTGCACGGGATTGTTTTGGTTGGACTCCAAGTCTTCGTCGGCAGATCTGGTGACGTTTCTGTGTCACCTTTGGGCTTGGCTAGTGGCGGCGACGTCACTACGTGTCGTGACCAGAGGTATTGTCAATGGGTGCCGGAGGATGTCTCCGGTGACCTTTTGCCGGGATGGGAGGGTGAACACGGGATCCGGAAATGCTGGTGCCAGGAGCTCAAAAGGTTTTTCTTCGGTGTTGGAGAGCTTGAGCTAAGTTTCACAGTAGGTGTTGGAGTATGGTGCCGGAGGATAGGTCACCGGGGTGCTTGTGTTGAGCATGGTGGTGGGAGTGGTGGGCCATGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

12.99

Weight (kDa)

6.39

Isoelectric Point (pI)

28.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 117
AccB1I GGYRCC 3 cut(s) 151, 219, 294
AccIII TCCGGA 1 cut(s) 207
AciI CCGC 1 cut(s) 108
AclWI GGATC 2 cut(s) 199, 212
AcyI GRCGYC 1 cut(s) 114
AdeI CACNNNGTG 1 cut(s) 123
AfaI GTAC 1 cut(s) 20
AfiI CCNNNNNNNGG 1 cut(s) 181
AflIII ACRYGT 1 cut(s) 122
AhdI GACNNNNNGTC 1 cut(s) 50
AjnI CCWGG 1 cut(s) 222
AleI CACNNNNGTG 1 cut(s) 315
AloI GAACNNNNNNTCC 2 cut(s) 189, 221
AluBI AGCT 3 cut(s) 229, 259, 265
AluI AGCT 3 cut(s) 229, 259, 265
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 169
AlwI GGATC 2 cut(s) 199, 212
Aor13HI TCCGGA 1 cut(s) 207
AoxI GGCC 1 cut(s) 350
ApeKI GCWGC 1 cut(s) 13
AspS9I GGNCC 1 cut(s) 350
AsuC2I CCSGG 2 cut(s) 183, 314
AsuHPI GGTGA 5 cut(s) 78, 83, 182, 206, 302
BamHI GGATCC 1 cut(s) 204
BanI GGYRCC 3 cut(s) 151, 219, 294
BanII GRGCYC 1 cut(s) 231
BbsI GAAGAC 1 cut(s) 46
Bbv12I GWGCWC 1 cut(s) 231
BccI CCATC 1 cut(s) 180
BciT130I CCWGG 1 cut(s) 224
BcnI CCSGG 2 cut(s) 183, 314
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 1 cut(s) 102
BglII AGATCT 1 cut(s) 65
BisI GCNGC 2 cut(s) 14, 109
BlsI GCNGC 2 cut(s) 15, 110
Bme1390I CCNGG 3 cut(s) 183, 224, 314
BmeRI GACNNNNNGTC 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 4 cut(s) 153, 206, 221, 296
BmrFI CCNGG 3 cut(s) 183, 224, 314
BpiI GAAGAC 1 cut(s) 46
BplI GAGNNNNNCTC 2 cut(s) 149, 181
BpuEI CTTGAG 1 cut(s) 281
BpuMI CCSGG 2 cut(s) 183, 314
BsaAI YACGTR 1 cut(s) 123
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 2 cut(s) 313, 353
BsaWI WCCGGW 2 cut(s) 167, 207
BsaXI ACNNNNNCTCC 2 cut(s) 292, 322
Bsc4I CCNNNNNNNGG 1 cut(s) 181
BseAI TCCGGA 1 cut(s) 207
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 2 cut(s) 313, 353
BseGI GGATG 2 cut(s) 166, 191
BseLI CCNNNNNNNGG 1 cut(s) 181
BshFI GGCC 1 cut(s) 352
BshNI GGYRCC 3 cut(s) 151, 219, 294
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 6 cut(s) 155, 168, 182, 208, 298, 313
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 169
BsnI GGCC 1 cut(s) 352
Bsp1286I GDGCHC 1 cut(s) 231
Bsp13I TCCGGA 1 cut(s) 207
Bsp143I GATC 2 cut(s) 65, 204
Bsp19I CCATGG 1 cut(s) 353
BspACI CCGC 1 cut(s) 108
BspANI GGCC 1 cut(s) 352
BspEI TCCGGA 1 cut(s) 207
BspLI GGNNCC 4 cut(s) 153, 206, 221, 296
BspPI GGATC 2 cut(s) 199, 212
BspT107I GGYRCC 3 cut(s) 151, 219, 294
BssECI CCNNGG 2 cut(s) 313, 353
BssMI GATC 2 cut(s) 65, 204
BssNI GRCGYC 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 353
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 277
BstACI GRCGYC 1 cut(s) 114
BstBAI YACGTR 1 cut(s) 123
BstDEI CTNAG 1 cut(s) 266
BstDSI CCRYGG 1 cut(s) 353
BstEII GGTNACC 2 cut(s) 170, 308
BstF5I GGATG 2 cut(s) 166, 191
BstKTI GATC 2 cut(s) 68, 207
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 2 cut(s) 65, 204
BstMWI GCNNNNNNNGC 1 cut(s) 22
BstNI CCWGG 1 cut(s) 224
BstPI GGTNACC 2 cut(s) 170, 308
BstSCI CCNGG 3 cut(s) 181, 222, 312
BstV2I GAAGAC 1 cut(s) 46
BstX2I RGATCY 2 cut(s) 65, 204
BstYI RGATCY 2 cut(s) 65, 204
BsuRI GGCC 1 cut(s) 352
BtgI CCRYGG 1 cut(s) 353
BtsCI GGATG 2 cut(s) 166, 191
Cfr13I GGNCC 1 cut(s) 350
Csp6I GTAC 1 cut(s) 19
CviAII CATG 2 cut(s) 332, 354
CviJI RGCY 6 cut(s) 96, 101, 229, 259, 265, 352
CviKI_1 RGCY 6 cut(s) 96, 101, 229, 259, 265, 352
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 1 cut(s) 266
DpnI GATC 2 cut(s) 67, 206
DpnII GATC 2 cut(s) 65, 204
DraIII CACNNNGTG 1 cut(s) 123
DriI GACNNNNNGTC 1 cut(s) 50
Eam1105I GACNNNNNGTC 1 cut(s) 50
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 353
Eco24I GRGCYC 1 cut(s) 231
Eco53kI GAGCTC 1 cut(s) 229
Eco91I GGTNACC 2 cut(s) 170, 308
EcoICRI GAGCTC 1 cut(s) 229
EcoO65I GGTNACC 2 cut(s) 170, 308
EcoRII CCWGG 1 cut(s) 222
EcoT14I CCWWGG 1 cut(s) 353
EcoT38I GRGCYC 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 353
FaeI CATG 2 cut(s) 335, 357
FaiI YATR 4 cut(s) 11, 292, 333, 355
FatI CATG 2 cut(s) 331, 353
Fnu4HI GCNGC 2 cut(s) 14, 109
FokI GGATG 2 cut(s) 173, 198
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 2 cut(s) 14, 109
FspBI CTAG 1 cut(s) 102
GluI GCNGC 2 cut(s) 14, 109
HaeIII GGCC 1 cut(s) 352
HapII CCGG 6 cut(s) 155, 168, 182, 208, 298, 313
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 2 cut(s) 335, 357
HinfI GANTC 1 cut(s) 45
HpaII CCGG 6 cut(s) 155, 168, 182, 208, 298, 313
HphI GGTGA 5 cut(s) 78, 83, 182, 206, 302
Hpy166II GTNNAC 1 cut(s) 197
Hpy188III TCNNGA 2 cut(s) 128, 208
Hpy8I GTNNAC 1 cut(s) 197
Hpy99I CGWCG 2 cut(s) 62, 116
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4IV ACGT 3 cut(s) 75, 114, 122
HpyCH4V TGCA 1 cut(s) 25
HpyF10VI GCNNNNNNNGC 1 cut(s) 22
HpyF3I CTNAG 1 cut(s) 266
HpySE526I ACGT 3 cut(s) 75, 114, 122
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 2 cut(s) 335, 357
Kpn2I TCCGGA 1 cut(s) 207
Kzo9I GATC 2 cut(s) 65, 204
LmnI GCTCC 1 cut(s) 226
MaeI CTAG 1 cut(s) 102
MaeII ACGT 3 cut(s) 75, 114, 122
MaeIII GTNAC 6 cut(s) 71, 84, 115, 128, 170, 308
MalI GATC 2 cut(s) 67, 206
MboI GATC 2 cut(s) 65, 204
MboII GAAGA 2 cut(s) 46, 235
MflI RGATCY 2 cut(s) 65, 204
MhlI GDGCHC 1 cut(s) 231
MlyI GAGTC 1 cut(s) 39
MmeI TCCRAC 3 cut(s) 22, 232, 265
MnlI CCTC 4 cut(s) 129, 151, 184, 294
MroI TCCGGA 1 cut(s) 207
MslI CAYNNNNRTG 3 cut(s) 315, 336, 358
MspI CCGG 6 cut(s) 155, 168, 182, 208, 298, 313
MspR9I CCNGG 3 cut(s) 183, 224, 314
MvaI CCWGG 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 22
NciI CCSGG 2 cut(s) 183, 314
NcoI CCATGG 1 cut(s) 353
NdeII GATC 2 cut(s) 65, 204
NlaIII CATG 2 cut(s) 335, 357
NlaIV GGNNCC 4 cut(s) 153, 206, 221, 296
NmuCI GTSAC 6 cut(s) 71, 84, 115, 128, 170, 308
OliI CACNNNNGTG 1 cut(s) 315
PkrI GCNGC 2 cut(s) 15, 110
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
Ppu21I YACGTR 1 cut(s) 123
Psp124BI GAGCTC 1 cut(s) 231
Psp6I CCWGG 1 cut(s) 222
PspEI GGTNACC 2 cut(s) 170, 308
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 4 cut(s) 153, 206, 221, 296
PspPI GGNCC 1 cut(s) 350
PsuI RGATCY 2 cut(s) 65, 204
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
RseI CAYNNNNRTG 3 cut(s) 315, 336, 358
SacI GAGCTC 1 cut(s) 231
SatI GCNGC 2 cut(s) 14, 109
Sau3AI GATC 2 cut(s) 65, 204
Sau96I GGNCC 1 cut(s) 350
SchI GAGTC 1 cut(s) 39
ScrFI CCNGG 3 cut(s) 183, 224, 314
SduI GDGCHC 1 cut(s) 231
SmiMI CAYNNNNRTG 3 cut(s) 315, 336, 358
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
SsiI CCGC 1 cut(s) 108
SspMI CTAG 1 cut(s) 102
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 3 cut(s) 181, 222, 312
StyI CCWWGG 1 cut(s) 353
TaaI ACNGT 1 cut(s) 277
TaiI ACGT 3 cut(s) 78, 117, 125
TatI WGTACW 1 cut(s) 18
TauI GCSGC 1 cut(s) 111
TseFI GTSAC 6 cut(s) 71, 84, 115, 128, 170, 308
TseI GCWGC 1 cut(s) 13
Tsp45I GTSAC 6 cut(s) 71, 84, 115, 128, 170, 308
XspI CTAG 1 cut(s) 102
ZraI GACGTC 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.