RLG00000028421

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0012604
Physical Location & Seq
Forward (+)
22575791 .. 22577413
1623 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028421

Sequence Viewer

Length: 351 bp
ATGGCGCGAATCACTGCTGCAATTGCTGTAATTGCCTTGTTTGCTGTGTTTCCGAGCATGGAGGCAACGCAGTATATTGTTGGTGATGACCGGGGTTGGAGTTCTAATGTTGATTACTACTCTTGGATTGCTGATAAAACTTTTCATGTTGGAGATTCTTTAGGATTGATTTGGCTGGCTTCCAAGCTTTTTGCGGCAGATTTCGTGACGTCTGTGTGTCACCACTTTCAGTTTCGGGGTGAAATGGCAGCGTCGACGCCACTCCCTGCTGAATTTGCACCTGGGCTGAGGGCTTGTCAAGCTTGCTGGGCTTGTTGTTTTTTTGCCCTGTTTTGGGCCTTTGTCCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

117

Amino Acids

12.81

Weight (kDa)

5.37

Isoelectric Point (pI)

30.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 212
AccI GTMKAC 1 cut(s) 254
AccII CGCG 1 cut(s) 7
AciI CCGC 1 cut(s) 194
AcsI RAATTY 1 cut(s) 272
AcyI GRCGYC 2 cut(s) 209, 257
AfiI CCNNNNNNNGG 2 cut(s) 333, 334
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 2 cut(s) 187, 302
AluI AGCT 2 cut(s) 187, 302
AoxI GGCC 1 cut(s) 336
ApeKI GCWGC 2 cut(s) 17, 248
ApoI RAATTY 1 cut(s) 272
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 336
AsuC2I CCSGG 1 cut(s) 92
AsuHPI GGTGA 3 cut(s) 95, 212, 251
BbvCI CCTCAGC 1 cut(s) 287
BbvI GCAGC 2 cut(s) 4, 260
BciT130I CCWGG 1 cut(s) 282
BcnI CCSGG 1 cut(s) 92
BisI GCNGC 3 cut(s) 18, 195, 249
BlsI GCNGC 3 cut(s) 19, 196, 250
Bme1390I CCNGG 2 cut(s) 92, 282
BmgT120I GGNCC 1 cut(s) 336
BmrFI CCNGG 2 cut(s) 92, 282
Bpu10I CCTNAGC 1 cut(s) 287
BpuMI CCSGG 1 cut(s) 92
BsaHI GRCGYC 2 cut(s) 209, 257
BsaJI CCNNGG 2 cut(s) 91, 281
Bsc4I CCNNNNNNNGG 2 cut(s) 333, 334
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 91, 281
BseLI CCNNNNNNNGG 2 cut(s) 333, 334
BseMII CTCAG 1 cut(s) 278
BseXI GCAGC 2 cut(s) 4, 260
BseYI CCCAGC 1 cut(s) 306
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 1 cut(s) 338
BsiSI CCGG 1 cut(s) 91
BslFI GGGAC 1 cut(s) 329
BslI CCNNNNNNNGG 2 cut(s) 333, 334
BsmFI GGGAC 1 cut(s) 329
BsnI GGCC 1 cut(s) 338
BspACI CCGC 1 cut(s) 194
BspANI GGCC 1 cut(s) 338
BspCNI CTCAG 1 cut(s) 279
BspFNI CGCG 1 cut(s) 7
BssECI CCNNGG 2 cut(s) 91, 281
BssNI GRCGYC 2 cut(s) 209, 257
Bst2UI CCWGG 1 cut(s) 282
BstACI GRCGYC 2 cut(s) 209, 257
BstC8I GCNNGC 2 cut(s) 177, 304
BstDEI CTNAG 1 cut(s) 287
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 1 cut(s) 7
BstMWI GCNNNNNNNGC 6 cut(s) 23, 32, 41, 275, 299, 308
BstNI CCWGG 1 cut(s) 282
BstSCI CCNGG 2 cut(s) 90, 280
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 2 cut(s) 4, 260
BsuRI GGCC 1 cut(s) 338
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 2 cut(s) 177, 304
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 336
CseI GACGC 2 cut(s) 240, 265
CviAII CATG 2 cut(s) 58, 146
CviJI RGCY 8 cut(s) 175, 179, 187, 286, 293, 302, 311, 338
CviKI_1 RGCY 8 cut(s) 175, 179, 187, 286, 293, 302, 311, 338
DdeI CTNAG 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 280
FaeI CATG 2 cut(s) 61, 149
FaiI YATR 3 cut(s) 59, 75, 147
FaqI GGGAC 1 cut(s) 329
FatI CATG 2 cut(s) 57, 145
FblI GTMKAC 1 cut(s) 254
Fnu4HI GCNGC 3 cut(s) 18, 195, 249
Fsp4HI GCNGC 3 cut(s) 18, 195, 249
GlaI GCGC 1 cut(s) 6
GluI GCNGC 3 cut(s) 18, 195, 249
GsaI CCCAGC 1 cut(s) 310
HaeIII GGCC 1 cut(s) 338
HapII CCGG 1 cut(s) 91
HgaI GACGC 2 cut(s) 240, 265
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 2 cut(s) 209, 257
Hin1II CATG 2 cut(s) 61, 149
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 255
HindII GTYRAC 1 cut(s) 255
HindIII AAGCTT 2 cut(s) 185, 300
HinfI GANTC 2 cut(s) 9, 155
HpaII CCGG 1 cut(s) 91
HphI GGTGA 3 cut(s) 95, 212, 251
Hpy166II GTNNAC 1 cut(s) 255
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 1 cut(s) 205
Hpy8I GTNNAC 1 cut(s) 255
Hpy99I CGWCG 2 cut(s) 256, 259
HpyCH4IV ACGT 1 cut(s) 209
HpyCH4V TGCA 2 cut(s) 20, 278
HpyF10VI GCNNNNNNNGC 6 cut(s) 23, 32, 41, 275, 299, 308
HpyF3I CTNAG 1 cut(s) 287
HpySE526I ACGT 1 cut(s) 209
Hsp92I GRCGYC 2 cut(s) 209, 257
Hsp92II CATG 2 cut(s) 61, 149
HspAI GCGC 1 cut(s) 5
LpnPI CCDG 7 cut(s) 104, 161, 267, 279, 292, 294, 341
Lsp1109I GCAGC 2 cut(s) 4, 260
MaeII ACGT 1 cut(s) 209
MaeIII GTNAC 2 cut(s) 205, 218
MfeI CAATTG 1 cut(s) 21
MluCI AATT 3 cut(s) 21, 30, 272
MmeI TCCRAC 2 cut(s) 77, 130
MnlI CCTC 2 cut(s) 55, 282
MspI CCGG 1 cut(s) 91
MspR9I CCNGG 2 cut(s) 92, 282
MunI CAATTG 1 cut(s) 21
MvaI CCWGG 1 cut(s) 282
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 6 cut(s) 23, 32, 41, 275, 299, 308
NciI CCSGG 1 cut(s) 92
NlaIII CATG 2 cut(s) 61, 149
NmuCI GTSAC 2 cut(s) 205, 218
PfeI GAWTC 2 cut(s) 9, 155
PkrI GCNGC 3 cut(s) 19, 196, 250
Psp6I CCWGG 1 cut(s) 280
PspFI CCCAGC 1 cut(s) 306
PspGI CCWGG 1 cut(s) 280
PspPI GGNCC 1 cut(s) 336
SalI GTCGAC 1 cut(s) 253
SatI GCNGC 3 cut(s) 18, 195, 249
Sau96I GGNCC 1 cut(s) 336
ScrFI CCNGG 2 cut(s) 92, 282
SetI ASST 4 cut(s) 189, 212, 283, 304
SgrDI CGTCGACG 1 cut(s) 253
Sse9I AATT 3 cut(s) 21, 30, 272
SsiI CCGC 1 cut(s) 194
StyD4I CCNGG 2 cut(s) 90, 280
TaiI ACGT 1 cut(s) 212
TaqI TCGA 1 cut(s) 254
TasI AATT 3 cut(s) 21, 30, 272
TauI GCSGC 1 cut(s) 197
TfiI GAWTC 2 cut(s) 9, 155
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 2 cut(s) 205, 218
TseI GCWGC 2 cut(s) 17, 248
Tsp45I GTSAC 2 cut(s) 205, 218
TspDTI ATGAA 1 cut(s) 134
TspRI CASTG 1 cut(s) 19
XapI RAATTY 1 cut(s) 272
XmiI GTMKAC 1 cut(s) 254
ZraI GACGTC 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.