Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000293.1

Orthogroup ID

OG0012604

Physical Location & Seq

Genomic Coordinates Reverse (-)

171883 .. 176809

Gene Structure 4927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000293.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

atgcctgcaaggactgatgtcctcacaagaggacatggtgccacccagagaagatgggtactgcaccactaccatggatggtggtatggtgacgccatgccaacacctcctaacataaaacctattgacattaataggtcttcgttagatagcgtgatgagaaaaagagatggtaatctcgccttatggcgtaagcttacaaatgtggtcactgcgtatctctatggggatctagatacggaatatgaaggttcttgtggacttcctaacataaaacctattgacattaataggtcttcgttagatagcgtgatgagaaaaagagatgctccctgctgccgcggcggtggcaagtatgctttcccttttgtctttgctttcctttccttcccagatccccttttccaaccattcctaatctttaattttcagcatacccatctctctttgtctcaaatctctgattcatcatggttaagatgcacatcctcctcacccatcggactccacttcaccaattgctcattggtccatcggagctttgtcgtcggcgttgtttggattgtctgttttaacgggtttttcccgtccctgcgcgtaaacccgttgaatacggtagtgcaacaagggtctgcacggtcttcggccgtctgtctctttgatccctctgcggatcagtctccttctctttatctcttcttctttttttcttctgctttggttactgactttgtttctgaggatgtcttgtatggtttagagatttgggttatggagatctttcgatgggttctatgctgctgtacttgcacgggattgttttggttggactccatgtcttcgtcggcagatctggtgacgtttctgtgtcacctttgggcttggctggtggcggcgacgtcactacgtcatctctctcctgttaggtctgcactgtggctgaagattgtagggctatttgtaaactatgataagtcgtcagtctatttttctgccaagactcccactgatgttcaatcggagattgcctcaattcttaaaatccctatctcggaaaactcgggtagagaggacctgataaagttggtggcaatggctgttcccgcataccccatgtctgtctttctattacctagctccttgtgtaaagctataaactttgacatagccaatttttggtggggttatgttggtagcaaagataaattgcattggaaagcctggaatcacctttgcaaaagtaaggcagatgggggaattggtttcaaacagctcctgactttcaataaggccctccttgctaaacagtgttggcgattgatcaacaaccccaactccttgtggtgccgtgtcctaaaggctcgatatttccattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

458

Amino Acids

51.9

Weight (kDa)

8.99

Isoelectric Point (pI)

51.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012604)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g10933 FvH4_4g15741 FvH4_5g05121 FvH4_6g19273
rosa_chinensis	RchiOBHm_Chr1g0337621 RchiOBHm_Chr2g0156151 RchiOBHm_Chr2g0169831 RchiOBHm_Chr3g0449881 RchiOBHm_Chr5g0050841 RchiOBHm_Chr6g0262191 RchiOBHm_Chr6g0312951
rosa_laevigata	RLG00000013410 RLG00000014407 RLG00000028421 RLG00000036361
rosa_multiflora	Rmu_sc0000293.1_g000034
rosa_roxburghii	Rroxscaffold_1G00053350 Rroxscaffold_4G00302710 Rroxscaffold_5G00344970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	902
AccB1I	GGYRCC	2 cut(s)	38, 1344
AccB7I	CCANNNNNTGG	1 cut(s)	1176
AccII	CGCG	2 cut(s)	342, 597
AciI	CCGC	6 cut(s)	340, 342, 345, 671, 893, 1104
AclWI	GGATC	4 cut(s)	237, 389, 656, 681
AcoI	YGGCCR	1 cut(s)	645
AcuI	CTGAAG	1 cut(s)	962
AcyI	GRCGYC	2 cut(s)	93, 899
AfaI	GTAC	2 cut(s)	60, 805
AfiI	CCNNNNNNNGG	2 cut(s)	1051, 1176
AgsI	TTSAA	4 cut(s)	610, 1016, 1267, 1285
AhdI	GACNNNNNGTC	1 cut(s)	835
AjnI	CCWGG	1 cut(s)	1220
AluBI	AGCT	5 cut(s)	196, 540, 1137, 1151, 1273
AluI	AGCT	5 cut(s)	196, 540, 1137, 1151, 1273
Alw26I	GTCTC	3 cut(s)	456, 659, 684
AlwI	GGATC	4 cut(s)	237, 389, 656, 681
AlwNI	CAGNNNCTG	1 cut(s)	1276
Ama87I	CYCGRG	1 cut(s)	1060
AoxI	GGCC	2 cut(s)	645, 1290
ApeKI	GCWGC	2 cut(s)	336, 798
AseI	ATTAAT	2 cut(s)	132, 288
AspLEI	GCGC	1 cut(s)	597
AspS9I	GGNCC	3 cut(s)	529, 1072, 1291
AsuHPI	GGTGA	6 cut(s)	101, 486, 505, 863, 868, 1220
AvaI	CYCGRG	1 cut(s)	1060
AvaII	GGWCC	2 cut(s)	529, 1072
BanI	GGYRCC	2 cut(s)	38, 1344
BbsI	GAAGAC	4 cut(s)	132, 288, 633, 831
BbvI	GCAGC	2 cut(s)	323, 785
BccI	CCATC	8 cut(s)	48, 72, 164, 447, 506, 540, 780, 1244
BceAI	ACGGC	2 cut(s)	632, 1332
BcgI	CGANNNNNNTGC	2 cut(s)	624, 658
BciT130I	CCWGG	1 cut(s)	1222
BclI	TGATCA	1 cut(s)	1320
BcoDI	GTCTC	3 cut(s)	456, 659, 684
BfaI	CTAG	2 cut(s)	233, 1134
BglII	AGATCT	2 cut(s)	777, 850
BisI	GCNGC	5 cut(s)	337, 340, 343, 799, 894
BlsI	GCNGC	5 cut(s)	338, 341, 344, 800, 895
Bme1390I	CCNGG	1 cut(s)	1222
Bme18I	GGWCC	2 cut(s)	529, 1072
BmeRI	GACNNNNNGTC	1 cut(s)	835
BmeT110I	CYCGRG	1 cut(s)	1060
BmgT120I	GGNCC	3 cut(s)	529, 1072, 1291
BmiI	GGNNCC	2 cut(s)	40, 1346
BmrFI	CCNGG	1 cut(s)	1222
BmsI	GCATC	2 cut(s)	316, 470
BoxI	GACNNNNGTC	1 cut(s)	17
BpiI	GAAGAC	4 cut(s)	132, 288, 633, 831
BplI	GAGNNNNNCTC	2 cut(s)	1013, 1045
BsaBI	GATNNNNATC	2 cut(s)	174, 484
BsaHI	GRCGYC	2 cut(s)	93, 899
BsaJI	CCNNGG	2 cut(s)	73, 340
BsaXI	ACNNNNNCTCC	2 cut(s)	1319, 1349
Bsc4I	CCNNNNNNNGG	2 cut(s)	1051, 1176
Bse3DI	GCAATG	1 cut(s)	1098
Bse8I	GATNNNNATC	2 cut(s)	174, 484
BseBI	CCWGG	1 cut(s)	1222
BseDI	CCNNGG	2 cut(s)	73, 340
BseGI	GGATG	3 cut(s)	83, 485, 748
BseJI	GATNNNNATC	2 cut(s)	174, 484
BseLI	CCNNNNNNNGG	2 cut(s)	1051, 1176
BseMI	GCAATG	1 cut(s)	1098
BseMII	CTCAG	1 cut(s)	729
BseRI	GAGGAG	1 cut(s)	481
BseX3I	CGGCCG	1 cut(s)	645
BseXI	GCAGC	2 cut(s)	323, 785
BsgI	GTGCAG	3 cut(s)	47, 618, 915
Bsh1236I	CGCG	2 cut(s)	342, 597
Bsh1285I	CGRYCG	1 cut(s)	648
BshFI	GGCC	2 cut(s)	647, 1292
BshNI	GGYRCC	2 cut(s)	38, 1344
BsiEI	CGRYCG	1 cut(s)	648
BsiHKCI	CYCGRG	1 cut(s)	1060
BslFI	GGGAC	1 cut(s)	574
BslI	CCNNNNNNNGG	2 cut(s)	1051, 1176
BsmAI	GTCTC	3 cut(s)	456, 659, 684
BsmFI	GGGAC	1 cut(s)	574
BsnI	GGCC	2 cut(s)	647, 1292
BsoBI	CYCGRG	1 cut(s)	1060
Bsp143I	GATC	7 cut(s)	229, 394, 661, 673, 777, 850, 1320
Bsp19I	CCATGG	1 cut(s)	73
BspACI	CCGC	6 cut(s)	340, 342, 345, 671, 893, 1104
BspANI	GGCC	2 cut(s)	647, 1292
BspCNI	CTCAG	1 cut(s)	730
BspFNI	CGCG	2 cut(s)	342, 597
BspLI	GGNNCC	2 cut(s)	40, 1346
BspPI	GGATC	4 cut(s)	237, 389, 656, 681
BspT107I	GGYRCC	2 cut(s)	38, 1344
BsrDI	GCAATG	1 cut(s)	1098
BssECI	CCNNGG	2 cut(s)	73, 340
BssMI	GATC	7 cut(s)	229, 394, 661, 673, 777, 850, 1320
BssNI	GRCGYC	2 cut(s)	93, 899
BssT1I	CCWWGG	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	1222
Bst4CI	ACNGT	4 cut(s)	616, 639, 936, 1308
Bst6I	CTCTTC	1 cut(s)	701
BstACI	GRCGYC	2 cut(s)	93, 899
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	738
BstDSI	CCRYGG	2 cut(s)	73, 340
BstF5I	GGATG	3 cut(s)	83, 485, 748
BstFNI	CGCG	2 cut(s)	342, 597
BstHHI	GCGC	1 cut(s)	597
BstKTI	GATC	7 cut(s)	232, 397, 664, 676, 780, 853, 1323
BstMAI	GTCTC	3 cut(s)	456, 659, 684
BstMBI	GATC	7 cut(s)	229, 394, 661, 673, 777, 850, 1320
BstMCI	CGRYCG	1 cut(s)	648
BstMWI	GCNNNNNNNGC	5 cut(s)	342, 348, 807, 1103, 1298
BstNI	CCWGG	1 cut(s)	1222
BstPAI	GACNNNNGTC	1 cut(s)	17
BstSCI	CCNGG	1 cut(s)	1220
BstUI	CGCG	2 cut(s)	342, 597
BstV1I	GCAGC	2 cut(s)	323, 785
BstV2I	GAAGAC	4 cut(s)	132, 288, 633, 831
BstX2I	RGATCY	4 cut(s)	229, 394, 777, 850
BstXI	CCANNNNNNTGG	1 cut(s)	74
BstYI	RGATCY	4 cut(s)	229, 394, 777, 850
BstZI	CGGCCG	1 cut(s)	645
BsuRI	GGCC	2 cut(s)	647, 1292
BtgI	CCRYGG	2 cut(s)	73, 340
BtsCI	GGATG	3 cut(s)	83, 485, 748
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	4 cut(s)	210, 932, 1005, 1313
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	1276
CfoI	GCGC	1 cut(s)	597
Cfr13I	GGNCC	3 cut(s)	529, 1072, 1291
Cfr42I	CCGCGG	1 cut(s)	343
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	2 cut(s)	59, 804
CviAII	CATG	6 cut(s)	35, 74, 97, 471, 835, 1114
CviQI	GTAC	2 cut(s)	59, 804
DdeI	CTNAG	1 cut(s)	738
DpnI	GATC	7 cut(s)	231, 396, 663, 675, 779, 852, 1322
DpnII	GATC	7 cut(s)	229, 394, 661, 673, 777, 850, 1320
DriI	GACNNNNNGTC	1 cut(s)	835
EaeI	YGGCCR	1 cut(s)	645
EagI	CGGCCG	1 cut(s)	645
Eam1104I	CTCTTC	1 cut(s)	701
Eam1105I	GACNNNNNGTC	1 cut(s)	835
EarI	CTCTTC	1 cut(s)	701
EclXI	CGGCCG	1 cut(s)	645
Eco130I	CCWWGG	1 cut(s)	73
Eco47I	GGWCC	2 cut(s)	529, 1072
Eco52I	CGGCCG	1 cut(s)	645
Eco57I	CTGAAG	1 cut(s)	962
Eco88I	CYCGRG	1 cut(s)	1060
EcoO109I	RGGNCCY	2 cut(s)	1072, 1291
EcoRII	CCWGG	1 cut(s)	1220
EcoT14I	CCWWGG	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	73
FaeI	CATG	6 cut(s)	38, 77, 100, 474, 838, 1117
FaqI	GGGAC	1 cut(s)	574
FatI	CATG	6 cut(s)	34, 73, 96, 470, 834, 1113
FauI	CCCGC	1 cut(s)	1111
FbaI	TGATCA	1 cut(s)	1320
Fnu4HI	GCNGC	5 cut(s)	337, 340, 343, 799, 894
FokI	GGATG	3 cut(s)	90, 472, 755
Fsp4HI	GCNGC	5 cut(s)	337, 340, 343, 799, 894
FspBI	CTAG	2 cut(s)	233, 1134
GlaI	GCGC	1 cut(s)	596
GluI	GCNGC	5 cut(s)	337, 340, 343, 799, 894
HaeIII	GGCC	2 cut(s)	647, 1292
HgaI	GACGC	1 cut(s)	101
HhaI	GCGC	1 cut(s)	597
Hin1I	GRCGYC	2 cut(s)	93, 899
Hin1II	CATG	6 cut(s)	38, 77, 100, 474, 838, 1117
Hin6I	GCGC	1 cut(s)	595
HinP1I	GCGC	1 cut(s)	595
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	5 cut(s)	464, 504, 830, 1000, 1225
HphI	GGTGA	6 cut(s)	101, 486, 505, 863, 868, 1220
Hpy166II	GTNNAC	3 cut(s)	260, 601, 964
Hpy188I	TCNGA	6 cut(s)	463, 503, 537, 739, 1021, 1054
Hpy188III	TCNNGA	2 cut(s)	233, 1276
Hpy8I	GTNNAC	3 cut(s)	260, 601, 964
Hpy99I	CGWCG	3 cut(s)	551, 847, 901
HpyAV	CCTTC	3 cut(s)	242, 397, 693
HpyCH4III	ACNGT	4 cut(s)	616, 639, 936, 1308
HpyCH4IV	ACGT	3 cut(s)	860, 899, 907
HpyCH4V	TGCA	9 cut(s)	8, 64, 483, 622, 635, 810, 932, 1210, 1236
HpyF10VI	GCNNNNNNNGC	5 cut(s)	342, 348, 807, 1103, 1298
HpyF3I	CTNAG	1 cut(s)	738
HpySE526I	ACGT	3 cut(s)	860, 899, 907
Hsp92I	GRCGYC	2 cut(s)	93, 899
Hsp92II	CATG	6 cut(s)	38, 77, 100, 474, 838, 1117
HspAI	GCGC	1 cut(s)	595
Ksp22I	TGATCA	1 cut(s)	1320
KspI	CCGCGG	1 cut(s)	343
Kzo9I	GATC	7 cut(s)	229, 394, 661, 673, 777, 850, 1320
LmnI	GCTCC	4 cut(s)	334, 537, 1142, 1278
Lsp1109I	GCAGC	2 cut(s)	323, 785
LweI	GCATC	2 cut(s)	316, 470
MaeI	CTAG	2 cut(s)	233, 1134
MaeII	ACGT	3 cut(s)	860, 899, 907
MaeIII	GTNAC	6 cut(s)	89, 208, 721, 856, 869, 900
MalI	GATC	7 cut(s)	231, 396, 663, 675, 779, 852, 1322
MboI	GATC	7 cut(s)	229, 394, 661, 673, 777, 850, 1320
MboII	GAAGA	9 cut(s)	63, 132, 288, 633, 688, 691, 702, 831, 955
MfeI	CAATTG	1 cut(s)	517
MflI	RGATCY	4 cut(s)	229, 394, 777, 850
MluCI	AATT	6 cut(s)	424, 517, 1032, 1171, 1205, 1257
MlyI	GAGTC	3 cut(s)	498, 824, 994
MmeI	TCCRAC	2 cut(s)	430, 807
MseI	TTAA	6 cut(s)	132, 288, 423, 476, 573, 1038
MslI	CAYNNNNRTG	1 cut(s)	72
MspA1I	CMGCKG	1 cut(s)	342
MspR9I	CCNGG	1 cut(s)	1222
MunI	CAATTG	1 cut(s)	517
MvaI	CCWGG	1 cut(s)	1222
MvnI	CGCG	2 cut(s)	342, 597
MwoI	GCNNNNNNNGC	5 cut(s)	342, 348, 807, 1103, 1298
NcoI	CCATGG	1 cut(s)	73
NdeII	GATC	7 cut(s)	229, 394, 661, 673, 777, 850, 1320
NlaIII	CATG	6 cut(s)	38, 77, 100, 474, 838, 1117
NlaIV	GGNNCC	2 cut(s)	40, 1346
NmuCI	GTSAC	5 cut(s)	89, 208, 856, 869, 900
PfeI	GAWTC	2 cut(s)	464, 1225
PflMI	CCANNNNNTGG	1 cut(s)	1176
PkrI	GCNGC	5 cut(s)	338, 341, 344, 800, 895
PleI	GAGTC	3 cut(s)	498, 824, 994
PpsI	GAGTC	3 cut(s)	498, 824, 994
PpuMI	RGGWCCY	1 cut(s)	1072
PshAI	GACNNNNGTC	1 cut(s)	17
PshBI	ATTAAT	2 cut(s)	132, 288
Psp5II	RGGWCCY	1 cut(s)	1072
Psp6I	CCWGG	1 cut(s)	1220
PspGI	CCWGG	1 cut(s)	1220
PspN4I	GGNNCC	2 cut(s)	40, 1346
PspPI	GGNCC	3 cut(s)	529, 1072, 1291
PspPPI	RGGWCCY	1 cut(s)	1072
PstNI	CAGNNNCTG	1 cut(s)	1276
PsuI	RGATCY	4 cut(s)	229, 394, 777, 850
RsaI	GTAC	2 cut(s)	60, 805
RsaNI	GTAC	2 cut(s)	59, 804
RseI	CAYNNNNRTG	1 cut(s)	72
SacII	CCGCGG	1 cut(s)	343
SaqAI	TTAA	6 cut(s)	132, 288, 423, 476, 573, 1038
SatI	GCNGC	5 cut(s)	337, 340, 343, 799, 894
Sau3AI	GATC	7 cut(s)	229, 394, 661, 673, 777, 850, 1320
Sau96I	GGNCC	3 cut(s)	529, 1072, 1291
SchI	GAGTC	3 cut(s)	498, 824, 994
ScrFI	CCNGG	1 cut(s)	1222
SfaNI	GCATC	2 cut(s)	316, 470
Sfr303I	CCGCGG	1 cut(s)	343
SgrBI	CCGCGG	1 cut(s)	343
SinI	GGWCC	2 cut(s)	529, 1072
SmiMI	CAYNNNNRTG	1 cut(s)	72
Sse9I	AATT	6 cut(s)	424, 517, 1032, 1171, 1205, 1257
SsiI	CCGC	6 cut(s)	340, 342, 345, 671, 893, 1104
SspMI	CTAG	2 cut(s)	233, 1134
StyD4I	CCNGG	1 cut(s)	1220
StyI	CCWWGG	1 cut(s)	73
TaaI	ACNGT	4 cut(s)	616, 639, 936, 1308
TaiI	ACGT	3 cut(s)	863, 902, 910
TaqI	TCGA	2 cut(s)	784, 1363
TasI	AATT	6 cut(s)	424, 517, 1032, 1171, 1205, 1257
TatI	WGTACW	1 cut(s)	803
TauI	GCSGC	3 cut(s)	342, 345, 896
TfiI	GAWTC	2 cut(s)	464, 1225
Tru1I	TTAA	6 cut(s)	132, 288, 423, 476, 573, 1038
Tru9I	TTAA	6 cut(s)	132, 288, 423, 476, 573, 1038
TscAI	CASTG	4 cut(s)	217, 939, 1012, 1313
TseFI	GTSAC	5 cut(s)	89, 208, 856, 869, 900
TseI	GCWGC	2 cut(s)	336, 798
Tsp45I	GTSAC	5 cut(s)	89, 208, 856, 869, 900
TspDTI	ATGAA	2 cut(s)	261, 456
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	4 cut(s)	217, 939, 1012, 1313
Van91I	CCANNNNNTGG	1 cut(s)	1176
VpaK11BI	GGWCC	2 cut(s)	529, 1072
VspI	ATTAAT	2 cut(s)	132, 288
XbaI	TCTAGA	1 cut(s)	232
XcmI	CCANNNNNNNNNTGG	1 cut(s)	523
XspI	CTAG	2 cut(s)	233, 1134
ZraI	GACGTC	1 cut(s)	900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.