RchiOBHm_Chr2g0169831

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
83954123 .. 83955219
1097 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53739

Sequence Viewer

Length: 267 bp
ATGGAGATCTTTCGATGGGTTCTATGCTGCTGTACTTGCACGGGATTGTTTTGGTTGGACTCCAAGTCTTCGTCGACAGATCTGGTGACGTTTCTGTGTCACCTTTGGGCTTGGCTGGTGGCGGCGACGTCACTTCGTCATCTCTCTCCTGTTAGATCTGCACTGTGGCTGAAGATTGTAGGGCTATTTGGTTTTGTTTGTTGTTGTTTGTTGATTTTTATTTGGGCCAATTTTGGGTCTTTTGTTTGTAATGTTGTTCTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.98

Weight (kDa)

8.12

Isoelectric Point (pI)

54.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 131
AccI GTMKAC 1 cut(s) 74
AciI CCGC 1 cut(s) 122
AcuI CTGAAG 1 cut(s) 191
AcyI GRCGYC 1 cut(s) 128
AfaI GTAC 1 cut(s) 34
AfiI CCNNNNNNNGG 1 cut(s) 234
AhdI GACNNNNNGTC 1 cut(s) 64
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 1 cut(s) 27
AspS9I GGNCC 1 cut(s) 225
AsuHPI GGTGA 2 cut(s) 92, 97
BbsI GAAGAC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 14
BccI CCATC 1 cut(s) 9
BglII AGATCT 3 cut(s) 6, 79, 155
BisI GCNGC 2 cut(s) 28, 123
BlsI GCNGC 2 cut(s) 29, 124
BmeRI GACNNNNNGTC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 225
BpiI GAAGAC 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 128
Bsc4I CCNNNNNNNGG 1 cut(s) 234
BseLI CCNNNNNNNGG 1 cut(s) 234
BseXI GCAGC 1 cut(s) 14
BsgI GTGCAG 1 cut(s) 144
BshFI GGCC 1 cut(s) 227
BslI CCNNNNNNNGG 1 cut(s) 234
BsnI GGCC 1 cut(s) 227
Bsp143I GATC 3 cut(s) 6, 79, 155
BspACI CCGC 1 cut(s) 122
BspANI GGCC 1 cut(s) 227
BssMI GATC 3 cut(s) 6, 79, 155
BssNI GRCGYC 1 cut(s) 128
Bst4CI ACNGT 1 cut(s) 165
BstACI GRCGYC 1 cut(s) 128
BstKTI GATC 3 cut(s) 9, 82, 158
BstMBI GATC 3 cut(s) 6, 79, 155
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 14
BstV2I GAAGAC 1 cut(s) 60
BstX2I RGATCY 3 cut(s) 6, 79, 155
BstYI RGATCY 3 cut(s) 6, 79, 155
BsuRI GGCC 1 cut(s) 227
BtsIMutI CAGTG 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 225
Csp6I GTAC 1 cut(s) 33
CviJI RGCY 5 cut(s) 110, 115, 169, 184, 227
CviKI_1 RGCY 5 cut(s) 110, 115, 169, 184, 227
CviQI GTAC 1 cut(s) 33
DpnI GATC 3 cut(s) 8, 81, 157
DpnII GATC 3 cut(s) 6, 79, 155
DriI GACNNNNNGTC 1 cut(s) 64
Eam1105I GACNNNNNGTC 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 191
FaiI YATR 1 cut(s) 25
FblI GTMKAC 1 cut(s) 74
Fnu4HI GCNGC 2 cut(s) 28, 123
Fsp4HI GCNGC 2 cut(s) 28, 123
GluI GCNGC 2 cut(s) 28, 123
HaeIII GGCC 1 cut(s) 227
Hin1I GRCGYC 1 cut(s) 128
HincII GTYRAC 1 cut(s) 75
HindII GTYRAC 1 cut(s) 75
HinfI GANTC 1 cut(s) 59
HphI GGTGA 2 cut(s) 92, 97
Hpy166II GTNNAC 1 cut(s) 75
Hpy8I GTNNAC 1 cut(s) 75
Hpy99I CGWCG 2 cut(s) 76, 130
HpyCH4III ACNGT 1 cut(s) 165
HpyCH4IV ACGT 2 cut(s) 89, 128
HpyCH4V TGCA 2 cut(s) 39, 161
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpySE526I ACGT 2 cut(s) 89, 128
Hsp92I GRCGYC 1 cut(s) 128
Kzo9I GATC 3 cut(s) 6, 79, 155
LpnPI CCDG 3 cut(s) 68, 101, 162
Lsp1109I GCAGC 1 cut(s) 14
MaeII ACGT 2 cut(s) 89, 128
MaeIII GTNAC 3 cut(s) 85, 98, 129
MalI GATC 3 cut(s) 8, 81, 157
MboI GATC 3 cut(s) 6, 79, 155
MboII GAAGA 2 cut(s) 60, 184
MflI RGATCY 3 cut(s) 6, 79, 155
MluCI AATT 1 cut(s) 229
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 1 cut(s) 36
MwoI GCNNNNNNNGC 1 cut(s) 36
NdeII GATC 3 cut(s) 6, 79, 155
NmuCI GTSAC 3 cut(s) 85, 98, 129
PkrI GCNGC 2 cut(s) 29, 124
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
PspPI GGNCC 1 cut(s) 225
PsuI RGATCY 3 cut(s) 6, 79, 155
RsaI GTAC 1 cut(s) 34
RsaNI GTAC 1 cut(s) 33
SalI GTCGAC 1 cut(s) 73
SatI GCNGC 2 cut(s) 28, 123
Sau3AI GATC 3 cut(s) 6, 79, 155
Sau96I GGNCC 1 cut(s) 225
SchI GAGTC 1 cut(s) 53
SetI ASST 3 cut(s) 92, 105, 131
SgeI CNNG 8 cut(s) 48, 52, 54, 76, 95, 123, 128, 161
Sse9I AATT 1 cut(s) 229
SsiI CCGC 1 cut(s) 122
TaaI ACNGT 1 cut(s) 165
TaiI ACGT 2 cut(s) 92, 131
TaqI TCGA 2 cut(s) 13, 74
TasI AATT 1 cut(s) 229
TatI WGTACW 1 cut(s) 32
TauI GCSGC 1 cut(s) 125
TscAI CASTG 1 cut(s) 168
TseFI GTSAC 3 cut(s) 85, 98, 129
TseI GCWGC 1 cut(s) 27
Tsp45I GTSAC 3 cut(s) 85, 98, 129
TspRI CASTG 1 cut(s) 168
XmiI GTMKAC 1 cut(s) 74
ZraI GACGTC 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.