RLG00000014407

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0012604
Physical Location & Seq
Forward (+)
52823525 .. 52826701
3177 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014407

Sequence Viewer

Length: 783 bp
ATGGCAAACGCCCAGGCCCTTCGTACCACCAAGTCCAGGCCCATTTCGAGTTCTACAAGGAACGCAGAACCACCGAAACTGACGATGGCCACCAATCCTCGATCCAACCACCACCTGTCATCCAACTCCGAGCCGATCTTTCACCTCACATCAAGTCTGGATATTAACCTCCTATGTTTGAACAGATTTCTGCTTGGAATCAGCTCCAGGCTTGGAAGCGGTCTTCAATATGCAAAGGGAGAGGGATTGAATGCCTTGAATGATAAGTCGAAGGGGTCTGAATTTTCGGCTTTGGGGACCTTGTATCCGAGTTCAGGGGCGGTGAAGAAGGGGAACAGTACCGGCGGCTCCAGAGATACTTTCTTACCCGTCCTCTCTCTCTATGTCTCAAGGGGGACTTACCCTTTTTCCATTCTTTCTTACCCGTCCTCTCTCTCAATGGGGACTTTACCCCTTTTTTGTTTCTTCAAACTTCACGGTAACGGAGAAGTAGACGTTGGTCAGATTGGGTCAGATGGAGATTTGGGTTATGGAGATATTTCGATGGGTTCTGTGTTGCTTTTCTTGTATGGGATTGTTTTAGTTGGTCTCCAAGTTTTCGCCGGCCGATCTGTTGACGTTTCTGTGTCACCCTTGGGTTTGGCTGGTGGCGGCGATGTCACTGCGTCCTCTCTCTCCTGGTCGATCTGCACTATGGTTGAAGCTTGCTGGGCTGTTTGGGCCTGTTTGTTTTCGTTTGTTTGTTCTTTTACTTTGGGCTCGGTTTGGGTCTTTAGCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

27.45

Weight (kDa)

8.21

Isoelectric Point (pI)

34.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 492
AciI CCGC 4 cut(s) 219, 320, 345, 651
AclWI GGATC 1 cut(s) 96
AcoI YGGCCR 2 cut(s) 87, 604
AcsI RAATTY 1 cut(s) 281
AfaI GTAC 2 cut(s) 25, 340
AfiI CCNNNNNNNGG 2 cut(s) 36, 314
AgsI TTSAA 6 cut(s) 181, 227, 250, 259, 469, 701
AjnI CCWGG 4 cut(s) 12, 35, 206, 677
AjuI GAANNNNNNNTTGG 2 cut(s) 480, 512
AluBI AGCT 3 cut(s) 204, 704, 777
AluI AGCT 3 cut(s) 204, 704, 777
Alw26I GTCTC 2 cut(s) 391, 593
AlwI GGATC 1 cut(s) 96
AoxI GGCC 5 cut(s) 15, 38, 87, 604, 720
ApoI RAATTY 1 cut(s) 281
AspS9I GGNCC 4 cut(s) 16, 39, 297, 720
AsuHPI GGTGA 3 cut(s) 134, 334, 621
AvaII GGWCC 1 cut(s) 297
BalI TGGCCA 1 cut(s) 89
BanII GRGCYC 1 cut(s) 761
BbsI GAAGAC 1 cut(s) 215
BccI CCATC 3 cut(s) 79, 509, 538
BcgI CGANNNNNNTGC 2 cut(s) 644, 678
BciT130I CCWGG 4 cut(s) 14, 37, 208, 679
BciVI GTATCC 1 cut(s) 315
BcoDI GTCTC 2 cut(s) 391, 593
BfuI GTATCC 1 cut(s) 315
BisI GCNGC 2 cut(s) 346, 652
BlsI GCNGC 2 cut(s) 347, 653
Bme1390I CCNGG 4 cut(s) 14, 37, 208, 679
Bme18I GGWCC 1 cut(s) 297
BmgT120I GGNCC 4 cut(s) 16, 39, 297, 720
BmiI GGNNCC 2 cut(s) 298, 349
BmrFI CCNGG 4 cut(s) 14, 37, 208, 679
BoxI GACNNNNGTC 1 cut(s) 498
BpiI GAAGAC 1 cut(s) 215
BpmI CTGGAG 2 cut(s) 190, 334
BpuEI CTTGAG 1 cut(s) 373
BsaI GGTCTC 1 cut(s) 593
BsaJI CCNNGG 2 cut(s) 12, 633
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 314
Bse118I RCCGGY 2 cut(s) 341, 602
BseBI CCWGG 4 cut(s) 14, 37, 208, 679
BseDI CCNNGG 2 cut(s) 12, 633
BseGI GGATG 1 cut(s) 119
BseLI CCNNNNNNNGG 2 cut(s) 36, 314
BseX3I CGGCCG 1 cut(s) 604
BseYI CCCAGC 1 cut(s) 708
BsgI GTGCAG 1 cut(s) 673
Bsh1285I CGRYCG 1 cut(s) 607
BshFI GGCC 5 cut(s) 17, 40, 89, 606, 722
BsiEI CGRYCG 1 cut(s) 607
BsiSI CCGG 2 cut(s) 342, 603
BslFI GGGAC 3 cut(s) 310, 409, 457
BslI CCNNNNNNNGG 2 cut(s) 36, 314
BsmAI GTCTC 2 cut(s) 391, 593
BsmFI GGGAC 3 cut(s) 310, 409, 457
BsmI GAATGC 1 cut(s) 256
BsnI GGCC 5 cut(s) 17, 40, 89, 606, 722
Bso31I GGTCTC 1 cut(s) 593
Bsp1286I GDGCHC 1 cut(s) 761
Bsp143I GATC 4 cut(s) 101, 135, 608, 684
BspACI CCGC 4 cut(s) 219, 320, 345, 651
BspANI GGCC 5 cut(s) 17, 40, 89, 606, 722
BspLI GGNNCC 2 cut(s) 298, 349
BspPI GGATC 1 cut(s) 96
BspTNI GGTCTC 1 cut(s) 593
BsrFI RCCGGY 2 cut(s) 341, 602
BssAI RCCGGY 2 cut(s) 341, 602
BssECI CCNNGG 2 cut(s) 12, 633
BssMI GATC 4 cut(s) 101, 135, 608, 684
BssT1I CCWWGG 1 cut(s) 633
Bst2UI CCWGG 4 cut(s) 14, 37, 208, 679
Bst4CI ACNGT 2 cut(s) 338, 479
BstC8I GCNNGC 2 cut(s) 604, 706
BstF5I GGATG 1 cut(s) 119
BstKTI GATC 4 cut(s) 104, 138, 611, 687
BstMAI GTCTC 2 cut(s) 391, 593
BstMBI GATC 4 cut(s) 101, 135, 608, 684
BstMCI CGRYCG 1 cut(s) 607
BstMWI GCNNNNNNNGC 2 cut(s) 710, 719
BstNI CCWGG 4 cut(s) 14, 37, 208, 679
BstPAI GACNNNNGTC 1 cut(s) 498
BstSCI CCNGG 4 cut(s) 12, 35, 206, 677
BstV2I GAAGAC 1 cut(s) 215
BstZI CGGCCG 1 cut(s) 604
BsuI GTATCC 1 cut(s) 315
BsuRI GGCC 5 cut(s) 17, 40, 89, 606, 722
BtgZI GCGATG 1 cut(s) 669
BtsCI GGATG 1 cut(s) 119
BtsI GCAGTG 1 cut(s) 660
BtsIMutI CAGTG 1 cut(s) 660
Cac8I GCNNGC 2 cut(s) 604, 706
Cfr10I RCCGGY 2 cut(s) 341, 602
Cfr13I GGNCC 4 cut(s) 16, 39, 297, 720
CseI GACGC 1 cut(s) 654
Csp6I GTAC 2 cut(s) 24, 339
CviQI GTAC 2 cut(s) 24, 339
DpnI GATC 4 cut(s) 103, 137, 610, 686
DpnII GATC 4 cut(s) 101, 135, 608, 684
EaeI YGGCCR 2 cut(s) 87, 604
EagI CGGCCG 1 cut(s) 604
EclXI CGGCCG 1 cut(s) 604
Eco130I CCWWGG 1 cut(s) 633
Eco24I GRGCYC 1 cut(s) 761
Eco31I GGTCTC 1 cut(s) 593
Eco47I GGWCC 1 cut(s) 297
Eco52I CGGCCG 1 cut(s) 604
EcoO109I RGGNCCY 2 cut(s) 16, 297
EcoRII CCWGG 4 cut(s) 12, 35, 206, 677
EcoT14I CCWWGG 1 cut(s) 633
EcoT38I GRGCYC 1 cut(s) 761
ErhI CCWWGG 1 cut(s) 633
FaiI YATR 6 cut(s) 175, 231, 384, 531, 570, 695
FalI AAGNNNNNCTT 2 cut(s) 382, 414
FaqI GGGAC 3 cut(s) 310, 409, 457
FblI GTMKAC 1 cut(s) 492
Fnu4HI GCNGC 2 cut(s) 346, 652
FokI GGATG 1 cut(s) 106
FriOI GRGCYC 1 cut(s) 761
Fsp4HI GCNGC 2 cut(s) 346, 652
GluI GCNGC 2 cut(s) 346, 652
GsaI CCCAGC 1 cut(s) 712
GsuI CTGGAG 2 cut(s) 190, 334
HaeIII GGCC 5 cut(s) 17, 40, 89, 606, 722
HapII CCGG 2 cut(s) 342, 603
HgaI GACGC 1 cut(s) 654
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HindIII AAGCTT 1 cut(s) 702
HinfI GANTC 1 cut(s) 198
HpaII CCGG 2 cut(s) 342, 603
HphI GGTGA 3 cut(s) 134, 334, 621
Hpy166II GTNNAC 2 cut(s) 493, 616
Hpy188I TCNGA 5 cut(s) 130, 280, 309, 504, 514
Hpy188III TCNNGA 2 cut(s) 158, 351
Hpy8I GTNNAC 2 cut(s) 493, 616
HpyAV CCTTC 3 cut(s) 29, 265, 322
HpyCH4III ACNGT 2 cut(s) 338, 479
HpyCH4IV ACGT 2 cut(s) 495, 618
HpyCH4V TGCA 2 cut(s) 233, 690
HpyF10VI GCNNNNNNNGC 2 cut(s) 710, 719
HpySE526I ACGT 2 cut(s) 495, 618
KroI GCCGGC 1 cut(s) 602
KroNI GCCGGC 1 cut(s) 604
Kzo9I GATC 4 cut(s) 101, 135, 608, 684
LmnI GCTCC 2 cut(s) 209, 353
MaeII ACGT 2 cut(s) 495, 618
MaeIII GTNAC 3 cut(s) 479, 627, 658
MalI GATC 4 cut(s) 103, 137, 610, 686
MboI GATC 4 cut(s) 101, 135, 608, 684
MboII GAAGA 3 cut(s) 215, 337, 457
MhlI GDGCHC 1 cut(s) 761
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 1 cut(s) 281
MluNI TGGCCA 1 cut(s) 89
MmeI TCCRAC 2 cut(s) 129, 147
MnlI CCTC 7 cut(s) 108, 155, 179, 235, 383, 439, 679
Mox20I TGGCCA 1 cut(s) 89
MroNI GCCGGC 1 cut(s) 602
MscI TGGCCA 1 cut(s) 89
MseI TTAA 1 cut(s) 165
Msp20I TGGCCA 1 cut(s) 89
MspI CCGG 2 cut(s) 342, 603
MspR9I CCNGG 4 cut(s) 14, 37, 208, 679
Mva1269I GAATGC 1 cut(s) 256
MvaI CCWGG 4 cut(s) 14, 37, 208, 679
MwoI GCNNNNNNNGC 2 cut(s) 710, 719
NaeI GCCGGC 1 cut(s) 604
NdeII GATC 4 cut(s) 101, 135, 608, 684
NgoMIV GCCGGC 1 cut(s) 602
NlaIV GGNNCC 2 cut(s) 298, 349
NmuCI GTSAC 2 cut(s) 627, 658
PctI GAATGC 1 cut(s) 256
PdiI GCCGGC 1 cut(s) 604
PfeI GAWTC 1 cut(s) 198
PkrI GCNGC 2 cut(s) 347, 653
PpuMI RGGWCCY 1 cut(s) 297
PshAI GACNNNNGTC 1 cut(s) 498
Psp5II RGGWCCY 1 cut(s) 297
Psp6I CCWGG 4 cut(s) 12, 35, 206, 677
PspFI CCCAGC 1 cut(s) 708
PspGI CCWGG 4 cut(s) 12, 35, 206, 677
PspN4I GGNNCC 2 cut(s) 298, 349
PspPI GGNCC 4 cut(s) 16, 39, 297, 720
PspPPI RGGWCCY 1 cut(s) 297
RsaI GTAC 2 cut(s) 25, 340
RsaNI GTAC 2 cut(s) 24, 339
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 2 cut(s) 346, 652
Sau3AI GATC 4 cut(s) 101, 135, 608, 684
Sau96I GGNCC 4 cut(s) 16, 39, 297, 720
ScrFI CCNGG 4 cut(s) 14, 37, 208, 679
SduI GDGCHC 1 cut(s) 761
SetI ASST 9 cut(s) 117, 147, 171, 206, 302, 498, 621, 706, 779
SinI GGWCC 1 cut(s) 297
SmlI CTYRAG 1 cut(s) 388
SmoI CTYRAG 1 cut(s) 388
Sse9I AATT 1 cut(s) 281
SsiI CCGC 4 cut(s) 219, 320, 345, 651
StyD4I CCNGG 4 cut(s) 12, 35, 206, 677
StyI CCWWGG 1 cut(s) 633
TaaI ACNGT 2 cut(s) 338, 479
TaiI ACGT 2 cut(s) 498, 621
TaqI TCGA 5 cut(s) 47, 100, 269, 542, 683
TasI AATT 1 cut(s) 281
TauI GCSGC 2 cut(s) 348, 654
TfiI GAWTC 1 cut(s) 198
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 1 cut(s) 667
TseFI GTSAC 2 cut(s) 627, 658
Tsp45I GTSAC 2 cut(s) 627, 658
TspGWI ACGGA 1 cut(s) 498
TspRI CASTG 1 cut(s) 667
VpaK11BI GGWCC 1 cut(s) 297
XapI RAATTY 1 cut(s) 281
XmiI GTMKAC 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.