RchiOBHm_Chr3g0449881

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
1557551 .. 1557721
171 bp
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UTR
Exon/CDS
Intron
PRQ41723

Sequence Viewer

Length: 171 bp
ATGGAGATCTTTCGATGGGTTCTGTGCTGCTGTTCTTGCACGAGATTGTTTTGGTTGGACTCTAAGTTTTCGACGGCCGATCTGGTGACTCTTTTGTGTCACCATTGGGTTTGGCTGGTGGCGGTGACGTCACTAGTCATCTCTATCCTAGTAGATCTGCACTGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

56

Amino Acids

6.48

Weight (kDa)

6.21

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 131
AciI CCGC 1 cut(s) 122
AcoI YGGCCR 1 cut(s) 75
AcyI GRCGYC 1 cut(s) 128
AhlI ACTAGT 1 cut(s) 133
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 1 cut(s) 27
AsuHPI GGTGA 3 cut(s) 92, 97, 136
BauI CACGAG 1 cut(s) 40
BbvI GCAGC 1 cut(s) 14
BccI CCATC 1 cut(s) 9
BceAI ACGGC 1 cut(s) 90
BcuI ACTAGT 1 cut(s) 133
BfaI CTAG 2 cut(s) 134, 149
BglII AGATCT 2 cut(s) 6, 154
BisI GCNGC 1 cut(s) 28
BlsI GCNGC 1 cut(s) 29
BsaHI GRCGYC 1 cut(s) 128
BseX3I CGGCCG 1 cut(s) 75
BseXI GCAGC 1 cut(s) 14
BsgI GTGCAG 1 cut(s) 143
Bsh1285I CGRYCG 1 cut(s) 78
BshFI GGCC 1 cut(s) 77
BsiEI CGRYCG 1 cut(s) 78
BsnI GGCC 1 cut(s) 77
Bsp143I GATC 3 cut(s) 6, 79, 154
BspACI CCGC 1 cut(s) 122
BspANI GGCC 1 cut(s) 77
BssMI GATC 3 cut(s) 6, 79, 154
BssNI GRCGYC 1 cut(s) 128
BssSI CACGAG 1 cut(s) 40
Bst2BI CACGAG 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 164
BstACI GRCGYC 1 cut(s) 128
BstDEI CTNAG 1 cut(s) 63
BstKTI GATC 3 cut(s) 9, 82, 157
BstMBI GATC 3 cut(s) 6, 79, 154
BstMCI CGRYCG 1 cut(s) 78
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 14
BstX2I RGATCY 2 cut(s) 6, 154
BstYI RGATCY 2 cut(s) 6, 154
BstZI CGGCCG 1 cut(s) 75
BsuRI GGCC 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 160
CviJI RGCY 2 cut(s) 77, 115
CviKI_1 RGCY 2 cut(s) 77, 115
DdeI CTNAG 1 cut(s) 63
DpnI GATC 3 cut(s) 8, 81, 156
DpnII GATC 3 cut(s) 6, 79, 154
EaeI YGGCCR 1 cut(s) 75
EagI CGGCCG 1 cut(s) 75
EclXI CGGCCG 1 cut(s) 75
Eco52I CGGCCG 1 cut(s) 75
Fnu4HI GCNGC 1 cut(s) 28
Fsp4HI GCNGC 1 cut(s) 28
FspBI CTAG 2 cut(s) 134, 149
GluI GCNGC 1 cut(s) 28
HaeIII GGCC 1 cut(s) 77
Hin1I GRCGYC 1 cut(s) 128
HinfI GANTC 2 cut(s) 59, 88
HphI GGTGA 3 cut(s) 92, 97, 136
Hpy99I CGWCG 1 cut(s) 76
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4IV ACGT 1 cut(s) 128
HpyCH4V TGCA 2 cut(s) 39, 160
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpyF3I CTNAG 1 cut(s) 63
HpySE526I ACGT 1 cut(s) 128
Hsp92I GRCGYC 1 cut(s) 128
Kzo9I GATC 3 cut(s) 6, 79, 154
LpnPI CCDG 2 cut(s) 68, 101
Lsp1109I GCAGC 1 cut(s) 14
MaeI CTAG 2 cut(s) 134, 149
MaeII ACGT 1 cut(s) 128
MaeIII GTNAC 4 cut(s) 85, 98, 124, 129
MalI GATC 3 cut(s) 8, 81, 156
MboI GATC 3 cut(s) 6, 79, 154
MflI RGATCY 2 cut(s) 6, 154
MlyI GAGTC 2 cut(s) 53, 82
MmeI TCCRAC 1 cut(s) 36
MwoI GCNNNNNNNGC 1 cut(s) 36
NdeII GATC 3 cut(s) 6, 79, 154
NmuCI GTSAC 4 cut(s) 85, 98, 124, 129
PkrI GCNGC 1 cut(s) 29
PleI GAGTC 2 cut(s) 53, 82
PpsI GAGTC 2 cut(s) 53, 82
PsuI RGATCY 2 cut(s) 6, 154
SatI GCNGC 1 cut(s) 28
Sau3AI GATC 3 cut(s) 6, 79, 154
SchI GAGTC 2 cut(s) 53, 82
SetI ASST 1 cut(s) 131
SgeI CNNG 7 cut(s) 48, 52, 54, 95, 128, 146, 161
SpeI ACTAGT 1 cut(s) 133
SsiI CCGC 1 cut(s) 122
SspMI CTAG 2 cut(s) 134, 149
TaaI ACNGT 1 cut(s) 164
TaiI ACGT 1 cut(s) 131
TaqI TCGA 2 cut(s) 13, 71
TscAI CASTG 1 cut(s) 167
TseFI GTSAC 4 cut(s) 85, 98, 124, 129
TseI GCWGC 1 cut(s) 27
Tsp45I GTSAC 4 cut(s) 85, 98, 124, 129
TspRI CASTG 1 cut(s) 167
XspI CTAG 2 cut(s) 134, 149
ZraI GACGTC 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.