Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0012604

Physical Location & Seq

Genomic Coordinates Reverse (-)

2994464 .. 2995031

Gene Structure 568 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g05121.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGATTCGAAGTAGACGATTTTGGATCTCCTATCTCTTCCAACCTTCTCCAATAGACCAGATCTTTGATTCTTCATGTCTAAGATGCACATCCTCCTTCAGCAGACCCAACCTCTCCGATTGTTCGTTGGTTCTTCGGAGCTCTGATGCTGGCGTTGTTTGGATCGTCTGGTTAAAAGGGGTTTTCCATTTTAGAGGATGTTTCGTATGGTTCAAAGATCTGGGTTATGGAGATCCTTGTAGGGGTTATGTTCTTCTGTTCTTGTACGGGATTGTATTGGTTGATTTTCGAGTTCTCTCCGGCAAATCTAGTGATGGTCCTGGGTCACGTTTGGGTGGTGATGGTGGCGTTAGCGTCTCCATACCTCTTGCTCCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

13.99

Weight (kDa)

8.7

Isoelectric Point (pI)

43.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012604)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g10933 FvH4_4g15741 FvH4_5g05121 FvH4_6g19273
rosa_chinensis	RchiOBHm_Chr1g0337621 RchiOBHm_Chr2g0156151 RchiOBHm_Chr2g0169831 RchiOBHm_Chr3g0449881 RchiOBHm_Chr5g0050841 RchiOBHm_Chr6g0262191 RchiOBHm_Chr6g0312951
rosa_laevigata	RLG00000013410 RLG00000014407 RLG00000028421 RLG00000036361
rosa_multiflora	Rmu_sc0000293.1_g000034
rosa_roxburghii	Rroxscaffold_1G00053350 Rroxscaffold_4G00302710 Rroxscaffold_5G00344970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	13
AclWI	GGATC	3 cut(s)	32, 170, 227
AcuI	CTGAAG	1 cut(s)	82
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	242
AgsI	TTSAA	1 cut(s)	214
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	1 cut(s)	141
AluI	AGCT	1 cut(s)	141
Alw21I	GWGCWC	1 cut(s)	143
Alw26I	GTCTC	1 cut(s)	361
AlwI	GGATC	3 cut(s)	32, 170, 227
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
AspS9I	GGNCC	1 cut(s)	317
AsuHPI	GGTGA	1 cut(s)	350
AsuII	TTCGAA	1 cut(s)	7
AvaII	GGWCC	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	143
BccI	CCATC	2 cut(s)	308, 335
BciT130I	CCWGG	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	361
BfaI	CTAG	1 cut(s)	309
BglII	AGATCT	2 cut(s)	60, 217
Bme1390I	CCNGG	1 cut(s)	321
Bme18I	GGWCC	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	317
BmrFI	CCNGG	1 cut(s)	321
BmsI	GCATC	2 cut(s)	74, 136
Bpu14I	TTCGAA	1 cut(s)	7
BsaBI	GATNNNNATC	1 cut(s)	88
BsaJI	CCNNGG	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
Bse8I	GATNNNNATC	1 cut(s)	88
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	320
BseGI	GGATG	2 cut(s)	89, 203
BseJI	GATNNNNATC	1 cut(s)	88
BseLI	CCNNNNNNNGG	1 cut(s)	242
BsiHKAI	GWGCWC	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	300
BslI	CCNNNNNNNGG	1 cut(s)	242
BsmAI	GTCTC	1 cut(s)	361
BsmBI	CGTCTC	1 cut(s)	361
Bsp119I	TTCGAA	1 cut(s)	7
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp143I	GATC	5 cut(s)	24, 60, 162, 217, 232
BspPI	GGATC	3 cut(s)	32, 170, 227
BspT104I	TTCGAA	1 cut(s)	7
BssECI	CCNNGG	1 cut(s)	320
BssMI	GATC	5 cut(s)	24, 60, 162, 217, 232
Bst2UI	CCWGG	1 cut(s)	321
Bst6I	CTCTTC	1 cut(s)	41
BstBI	TTCGAA	1 cut(s)	7
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	1 cut(s)	80
BstF5I	GGATG	2 cut(s)	89, 203
BstKTI	GATC	5 cut(s)	27, 63, 165, 220, 235
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	5 cut(s)	24, 60, 162, 217, 232
BstNI	CCWGG	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	319
BstX2I	RGATCY	4 cut(s)	24, 60, 217, 232
BstYI	RGATCY	4 cut(s)	24, 60, 217, 232
BtsCI	GGATG	2 cut(s)	89, 203
Cac8I	GCNNGC	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	317
CseI	GACGC	1 cut(s)	343
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	1 cut(s)	75
CviJI	RGCY	1 cut(s)	141
CviKI_1	RGCY	1 cut(s)	141
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	5 cut(s)	26, 62, 164, 219, 234
DpnII	GATC	5 cut(s)	24, 60, 162, 217, 232
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Ecl136II	GAGCTC	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	317
Eco53kI	GAGCTC	1 cut(s)	141
Eco57I	CTGAAG	1 cut(s)	82
EcoICRI	GAGCTC	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	319
EcoT38I	GRGCYC	1 cut(s)	143
Esp3I	CGTCTC	1 cut(s)	361
FaeI	CATG	1 cut(s)	78
FaiI	YATR	5 cut(s)	76, 208, 228, 249, 362
FatI	CATG	1 cut(s)	74
FblI	GTMKAC	1 cut(s)	13
FokI	GGATG	2 cut(s)	76, 210
FriOI	GRGCYC	1 cut(s)	143
FspBI	CTAG	1 cut(s)	309
HapII	CCGG	1 cut(s)	300
HgaI	GACGC	1 cut(s)	343
Hin1II	CATG	1 cut(s)	78
HinfI	GANTC	2 cut(s)	4, 68
HpaII	CCGG	1 cut(s)	300
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188I	TCNGA	3 cut(s)	118, 138, 145
Hpy188III	TCNNGA	1 cut(s)	374
Hpy8I	GTNNAC	1 cut(s)	14
HpyAV	CCTTC	2 cut(s)	54, 106
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	1 cut(s)	87
HpyF3I	CTNAG	1 cut(s)	80
HpySE526I	ACGT	1 cut(s)	328
Hsp92II	CATG	1 cut(s)	78
Kzo9I	GATC	5 cut(s)	24, 60, 162, 217, 232
LmnI	GCTCC	2 cut(s)	138, 376
LpnPI	CCDG	7 cut(s)	71, 135, 154, 206, 306, 313, 333
LweI	GCATC	2 cut(s)	74, 136
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	1 cut(s)	328
MaeIII	GTNAC	1 cut(s)	324
MalI	GATC	5 cut(s)	26, 62, 164, 219, 234
MboI	GATC	5 cut(s)	24, 60, 162, 217, 232
MboII	GAAGA	4 cut(s)	28, 63, 125, 245
MflI	RGATCY	4 cut(s)	24, 60, 217, 232
MhlI	GDGCHC	1 cut(s)	143
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	4 cut(s)	103, 122, 188, 375
MseI	TTAA	1 cut(s)	173
MspI	CCGG	1 cut(s)	300
MspR9I	CCNGG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	321
NdeII	GATC	5 cut(s)	24, 60, 162, 217, 232
NlaIII	CATG	1 cut(s)	78
NmuCI	GTSAC	1 cut(s)	324
NspV	TTCGAA	1 cut(s)	7
PcsI	WCGNNNNNNNCGW	1 cut(s)	13
PfeI	GAWTC	2 cut(s)	4, 68
Psp124BI	GAGCTC	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspPI	GGNCC	1 cut(s)	317
PsuI	RGATCY	4 cut(s)	24, 60, 217, 232
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SacI	GAGCTC	1 cut(s)	143
SaqAI	TTAA	1 cut(s)	173
Sau3AI	GATC	5 cut(s)	24, 60, 162, 217, 232
Sau96I	GGNCC	1 cut(s)	317
ScrFI	CCNGG	1 cut(s)	321
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	5 cut(s)	46, 114, 143, 331, 367
SfaNI	GCATC	2 cut(s)	74, 136
SfuI	TTCGAA	1 cut(s)	7
SinI	GGWCC	1 cut(s)	317
SspMI	CTAG	1 cut(s)	309
SstI	GAGCTC	1 cut(s)	143
StyD4I	CCNGG	1 cut(s)	319
TaiI	ACGT	1 cut(s)	331
TaqI	TCGA	2 cut(s)	7, 289
TfiI	GAWTC	2 cut(s)	4, 68
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TseFI	GTSAC	1 cut(s)	324
Tsp45I	GTSAC	1 cut(s)	324
TspDTI	ATGAA	1 cut(s)	63
VpaK11BI	GGWCC	1 cut(s)	317
XmiI	GTMKAC	1 cut(s)	13
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.