FvH4_4g15741

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
19649035 .. 19649845
811 bp
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UTR
Exon/CDS
Intron
FvH4_4g15741.t1

Sequence Viewer

Length: 336 bp
ATGAAAATCCTTGGATGGGTTATGTACTACAGTTCTTGCACGAGATTTTATTGGTTCAACTCTGAGTTTTCACCAGCAGATTGTCTGGTGTCACTTTTCGGTGGTGTTGGTGGTGGCAACGTACCTGTGCCTCTTGCTTCTGATTCATCTGCTCTTGTGGTTGAAGCTTGTAGTTGTTCTGATGTTACAGGGAGGGGTTATGCTACGATCTTCATGGGGAAGGAAATCAAAGAGAAAAATGACGGCCCAGTGTTGTCTGATGGCGGTCGGAGGTCATTAGGTCAGGCTCAAGATCGGAAGCTTGGGCTTGTTCATATCTCGCGGAAGAATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

11.95

Weight (kDa)

8.4

Isoelectric Point (pI)

67.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 322
AciI CCGC 2 cut(s) 264, 322
AcsI RAATTY 1 cut(s) 328
AfaI GTAC 2 cut(s) 26, 123
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 2 cut(s) 58, 164
AluBI AGCT 2 cut(s) 167, 301
AluI AGCT 2 cut(s) 167, 301
AoxI GGCC 1 cut(s) 244
ApoI RAATTY 1 cut(s) 328
AspS9I GGNCC 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 63
BauI CACGAG 1 cut(s) 40
BccI CCATC 2 cut(s) 9, 254
BceAI ACGGC 1 cut(s) 259
BfmI CTRYAG 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 245
BmrI ACTGGG 1 cut(s) 242
BmuI ACTGGG 1 cut(s) 242
BpuEI CTTGAG 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 10
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 10
BseGI GGATG 1 cut(s) 20
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 248
Bsh1236I CGCG 1 cut(s) 322
Bsh1285I CGRYCG 1 cut(s) 268
BshFI GGCC 1 cut(s) 246
BsiEI CGRYCG 1 cut(s) 268
BslI CCNNNNNNNGG 1 cut(s) 16
BsnI GGCC 1 cut(s) 246
Bsp143I GATC 2 cut(s) 207, 292
BspACI CCGC 2 cut(s) 264, 322
BspANI GGCC 1 cut(s) 246
BspCNI CTCAG 1 cut(s) 55
BspFNI CGCG 1 cut(s) 322
BsrI ACTGG 1 cut(s) 248
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 2 cut(s) 207, 292
BssSI CACGAG 1 cut(s) 40
BssT1I CCWWGG 1 cut(s) 10
Bst2BI CACGAG 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 32
BstDEI CTNAG 2 cut(s) 63, 333
BstF5I GGATG 1 cut(s) 20
BstFNI CGCG 1 cut(s) 322
BstKTI GATC 2 cut(s) 210, 295
BstMBI GATC 2 cut(s) 207, 292
BstMCI CGRYCG 1 cut(s) 268
BstSFI CTRYAG 1 cut(s) 28
BstUI CGCG 1 cut(s) 322
BsuRI GGCC 1 cut(s) 246
BtsCI GGATG 1 cut(s) 20
BtsIMutI CAGTG 1 cut(s) 255
Cfr13I GGNCC 1 cut(s) 245
Csp6I GTAC 2 cut(s) 25, 122
CviAII CATG 1 cut(s) 214
CviJI RGCY 5 cut(s) 167, 246, 287, 301, 307
CviKI_1 RGCY 5 cut(s) 167, 246, 287, 301, 307
CviQI GTAC 2 cut(s) 25, 122
DdeI CTNAG 2 cut(s) 63, 333
DpnI GATC 2 cut(s) 209, 294
DpnII GATC 2 cut(s) 207, 292
Eco130I CCWWGG 1 cut(s) 10
EcoRI GAATTC 1 cut(s) 328
EcoT14I CCWWGG 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 10
FaeI CATG 1 cut(s) 217
FaiI YATR 4 cut(s) 23, 201, 215, 315
FatI CATG 1 cut(s) 213
FokI GGATG 1 cut(s) 27
HaeIII GGCC 1 cut(s) 246
Hin1II CATG 1 cut(s) 217
HindIII AAGCTT 2 cut(s) 165, 299
HinfI GANTC 1 cut(s) 143
HphI GGTGA 1 cut(s) 63
Hpy188I TCNGA 6 cut(s) 64, 142, 181, 259, 270, 297
Hpy188III TCNNGA 1 cut(s) 290
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 1 cut(s) 39
HpyF3I CTNAG 2 cut(s) 63, 333
HpySE526I ACGT 1 cut(s) 120
Hsp92II CATG 1 cut(s) 217
Kzo9I GATC 2 cut(s) 207, 292
LpnPI CCDG 6 cut(s) 71, 87, 138, 174, 261, 269
MaeII ACGT 1 cut(s) 120
MaeIII GTNAC 2 cut(s) 90, 184
MalI GATC 2 cut(s) 209, 294
MboI GATC 2 cut(s) 207, 292
MboII GAAGA 1 cut(s) 202
MluCI AATT 1 cut(s) 328
MmeI TCCRAC 1 cut(s) 248
MnlI CCTC 3 cut(s) 141, 186, 264
MvnI CGCG 1 cut(s) 322
NdeII GATC 2 cut(s) 207, 292
NlaIII CATG 1 cut(s) 217
NmuCI GTSAC 1 cut(s) 90
PfeI GAWTC 1 cut(s) 143
PspPI GGNCC 1 cut(s) 245
RsaI GTAC 2 cut(s) 26, 123
RsaNI GTAC 2 cut(s) 25, 122
Sau3AI GATC 2 cut(s) 207, 292
Sau96I GGNCC 1 cut(s) 245
SetI ASST 6 cut(s) 123, 127, 169, 275, 283, 303
SfcI CTRYAG 1 cut(s) 28
SmlI CTYRAG 1 cut(s) 288
SmoI CTYRAG 1 cut(s) 288
Sse9I AATT 1 cut(s) 328
SsiI CCGC 2 cut(s) 264, 322
StyI CCWWGG 1 cut(s) 10
TaaI ACNGT 1 cut(s) 32
TaiI ACGT 1 cut(s) 123
TasI AATT 1 cut(s) 328
TatI WGTACW 1 cut(s) 24
TfiI GAWTC 1 cut(s) 143
TscAI CASTG 1 cut(s) 255
TseFI GTSAC 1 cut(s) 90
Tsp45I GTSAC 1 cut(s) 90
TspDTI ATGAA 4 cut(s) 17, 135, 202, 302
TspRI CASTG 1 cut(s) 255
XapI RAATTY 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.