Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0012604

Physical Location & Seq

Genomic Coordinates Reverse (-)

15159755 .. 15161234

Gene Structure 1480 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00344970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTCCTTTCCATCAATTCTCTCTCCTCTTTTTCCTTCCTTTTCCTCAATTTCTCAAATCTCTGATTCTTCATGGTCGAGATGCACATCCTCCTCACCTTTTAGACTCCACTTCACTGATAGCTCGTTGGTCCTCCGGAGCTCCAACGTCGGCGTCGTTTGGATCGTCTCTTTAAACGGGGTTGTCCTGTTATCACGCGTAAATCCAATGAATACGGTAGTGCAACAAGGGTCTGCATGGTCTTTGGTCGTTTGTCCCTTTGATCCCTCTGCGGATCGTTTATTTTTTTCTTCTTTGTTGGTTCCTATGTTTGTTTCGGAGAATGTTTTGTATGGTTTAGAGATTTGGGTTATGGAGCTATTTCGATGGGTTCTGTGCTGCTATTCTTGTTTGGGATTGTTTTGGTTGGACTCCAAGTTTTCGCTAGCCGATCTGGTGACTTTTCTATGTCACCCTAGGGTTTGGCTGGCAGCGGCGACGTCACTGCGTCATCTCTCTCCTGGTCGATCTGCACTGTGGTTGAAGTTTGTTGGGCTGTTTGGGCTTGTTTGTTTTTGTTTGTTTGTTCTTTTTCTTTGGGTCCGGTTTGGGTCTTTCGCTTGTAATGTTGTTTCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

206

Amino Acids

23.08

Weight (kDa)

8.39

Isoelectric Point (pI)

60.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012604)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g10933 FvH4_4g15741 FvH4_5g05121 FvH4_6g19273
rosa_chinensis	RchiOBHm_Chr1g0337621 RchiOBHm_Chr2g0156151 RchiOBHm_Chr2g0169831 RchiOBHm_Chr3g0449881 RchiOBHm_Chr5g0050841 RchiOBHm_Chr6g0262191 RchiOBHm_Chr6g0312951
rosa_laevigata	RLG00000013410 RLG00000014407 RLG00000028421 RLG00000036361
rosa_multiflora	Rmu_sc0000293.1_g000034
rosa_roxburghii	Rroxscaffold_1G00053350 Rroxscaffold_4G00302710 Rroxscaffold_5G00344970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	482
AccII	CGCG	1 cut(s)	198
AccIII	TCCGGA	1 cut(s)	135
AciI	CCGC	2 cut(s)	272, 473
AclWI	GGATC	3 cut(s)	170, 257, 282
AcyI	GRCGYC	2 cut(s)	153, 479
AflIII	ACRYGT	1 cut(s)	196
AgsI	TTSAA	1 cut(s)	523
AjnI	CCWGG	1 cut(s)	499
AluBI	AGCT	3 cut(s)	123, 141, 358
AluI	AGCT	3 cut(s)	123, 141, 358
Alw21I	GWGCWC	1 cut(s)	143
Alw26I	GTCTC	1 cut(s)	172
AlwI	GGATC	3 cut(s)	170, 257, 282
Aor13HI	TCCGGA	1 cut(s)	135
ApeKI	GCWGC	2 cut(s)	378, 470
AspA2I	CCTAGG	1 cut(s)	455
AspS9I	GGNCC	2 cut(s)	130, 580
AsuHPI	GGTGA	3 cut(s)	87, 443, 448
AsuNHI	GCTAGC	1 cut(s)	424
AvaII	GGWCC	2 cut(s)	130, 580
AvrII	CCTAGG	1 cut(s)	455
BanII	GRGCYC	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	143
BbvI	GCAGC	2 cut(s)	365, 482
BccI	CCATC	2 cut(s)	19, 360
BcgI	CGANNNNNNTGC	2 cut(s)	466, 500
BciT130I	CCWGG	1 cut(s)	501
BcoDI	GTCTC	1 cut(s)	172
BfaI	CTAG	2 cut(s)	425, 456
BisI	GCNGC	3 cut(s)	379, 471, 474
BlnI	CCTAGG	1 cut(s)	455
BlsI	GCNGC	3 cut(s)	380, 472, 475
Bme1390I	CCNGG	1 cut(s)	501
Bme18I	GGWCC	2 cut(s)	130, 580
BmgT120I	GGNCC	2 cut(s)	130, 580
BmiI	GGNNCC	2 cut(s)	303, 581
BmrFI	CCNGG	1 cut(s)	501
BmsI	GCATC	1 cut(s)	71
BmtI	GCTAGC	1 cut(s)	428
BsaBI	GATNNNNATC	1 cut(s)	85
BsaHI	GRCGYC	2 cut(s)	153, 479
BsaJI	CCNNGG	1 cut(s)	455
BsaWI	WCCGGW	2 cut(s)	135, 582
Bse8I	GATNNNNATC	1 cut(s)	85
BseAI	TCCGGA	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	501
BseDI	CCNNGG	1 cut(s)	455
BseGI	GGATG	1 cut(s)	86
BseJI	GATNNNNATC	1 cut(s)	85
BseRI	GAGGAG	2 cut(s)	15, 82
BseXI	GCAGC	2 cut(s)	365, 482
BsgI	GTGCAG	1 cut(s)	495
Bsh1236I	CGCG	1 cut(s)	198
BsiHKAI	GWGCWC	1 cut(s)	143
BsiSI	CCGG	2 cut(s)	136, 583
BslFI	GGGAC	1 cut(s)	240
BsmAI	GTCTC	1 cut(s)	172
BsmBI	CGTCTC	1 cut(s)	172
BsmFI	GGGAC	1 cut(s)	240
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp13I	TCCGGA	1 cut(s)	135
Bsp143I	GATC	5 cut(s)	162, 262, 274, 430, 506
BspACI	CCGC	2 cut(s)	272, 473
BspEI	TCCGGA	1 cut(s)	135
BspFNI	CGCG	1 cut(s)	198
BspLI	GGNNCC	2 cut(s)	303, 581
BspOI	GCTAGC	1 cut(s)	428
BspPI	GGATC	3 cut(s)	170, 257, 282
BssECI	CCNNGG	1 cut(s)	455
BssMI	GATC	5 cut(s)	162, 262, 274, 430, 506
BssNI	GRCGYC	2 cut(s)	153, 479
BssT1I	CCWWGG	1 cut(s)	455
Bst2UI	CCWGG	1 cut(s)	501
Bst4CI	ACNGT	2 cut(s)	217, 516
BstACI	GRCGYC	2 cut(s)	153, 479
BstC8I	GCNNGC	2 cut(s)	426, 468
BstF5I	GGATG	1 cut(s)	86
BstFNI	CGCG	1 cut(s)	198
BstKTI	GATC	5 cut(s)	165, 265, 277, 433, 509
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	5 cut(s)	162, 262, 274, 430, 506
BstMWI	GCNNNNNNNGC	1 cut(s)	541
BstNI	CCWGG	1 cut(s)	501
BstSCI	CCNGG	1 cut(s)	499
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	2 cut(s)	365, 482
BtsCI	GGATG	1 cut(s)	86
BtsI	GCAGTG	1 cut(s)	482
BtsIMutI	CAGTG	3 cut(s)	114, 482, 512
Cac8I	GCNNGC	2 cut(s)	426, 468
Cfr13I	GGNCC	2 cut(s)	130, 580
CseI	GACGC	2 cut(s)	142, 476
CviAII	CATG	2 cut(s)	72, 237
CviJI	RGCY	7 cut(s)	123, 141, 358, 428, 466, 535, 544
CviKI_1	RGCY	7 cut(s)	123, 141, 358, 428, 466, 535, 544
DpnI	GATC	5 cut(s)	164, 264, 276, 432, 508
DpnII	GATC	5 cut(s)	162, 262, 274, 430, 506
DraI	TTTAAA	1 cut(s)	174
Ecl136II	GAGCTC	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	455
Eco24I	GRGCYC	1 cut(s)	143
Eco47I	GGWCC	2 cut(s)	130, 580
Eco53kI	GAGCTC	1 cut(s)	141
EcoICRI	GAGCTC	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	499
EcoT14I	CCWWGG	1 cut(s)	455
EcoT38I	GRGCYC	1 cut(s)	143
ErhI	CCWWGG	1 cut(s)	455
Esp3I	CGTCTC	1 cut(s)	172
FaeI	CATG	2 cut(s)	75, 240
FaiI	YATR	6 cut(s)	73, 238, 308, 333, 353, 448
FaqI	GGGAC	1 cut(s)	240
FatI	CATG	2 cut(s)	71, 236
Fnu4HI	GCNGC	3 cut(s)	379, 471, 474
FokI	GGATG	1 cut(s)	73
FriOI	GRGCYC	1 cut(s)	143
Fsp4HI	GCNGC	3 cut(s)	379, 471, 474
FspBI	CTAG	2 cut(s)	425, 456
GluI	GCNGC	3 cut(s)	379, 471, 474
HapII	CCGG	2 cut(s)	136, 583
HgaI	GACGC	2 cut(s)	142, 476
Hin1I	GRCGYC	2 cut(s)	153, 479
Hin1II	CATG	2 cut(s)	75, 240
HinfI	GANTC	3 cut(s)	65, 105, 410
HpaII	CCGG	2 cut(s)	136, 583
HphI	GGTGA	3 cut(s)	87, 443, 448
Hpy188I	TCNGA	2 cut(s)	64, 319
Hpy188III	TCNNGA	2 cut(s)	78, 136
Hpy99I	CGWCG	3 cut(s)	152, 158, 481
HpyAV	CCTTC	1 cut(s)	45
HpyCH4III	ACNGT	2 cut(s)	217, 516
HpyCH4IV	ACGT	2 cut(s)	147, 479
HpyCH4V	TGCA	4 cut(s)	84, 223, 236, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	541
HpySE526I	ACGT	2 cut(s)	147, 479
Hsp92I	GRCGYC	2 cut(s)	153, 479
Hsp92II	CATG	2 cut(s)	75, 240
Kpn2I	TCCGGA	1 cut(s)	135
Kzo9I	GATC	5 cut(s)	162, 262, 274, 430, 506
LmnI	GCTCC	3 cut(s)	138, 146, 355
LpnPI	CCDG	7 cut(s)	149, 200, 419, 452, 486, 513, 596
Lsp1109I	GCAGC	2 cut(s)	365, 482
LweI	GCATC	1 cut(s)	71
MaeI	CTAG	2 cut(s)	425, 456
MaeII	ACGT	2 cut(s)	147, 479
MaeIII	GTNAC	3 cut(s)	436, 449, 480
MalI	GATC	5 cut(s)	164, 264, 276, 432, 508
MboI	GATC	5 cut(s)	162, 262, 274, 430, 506
MboII	GAAGA	2 cut(s)	60, 282
MhlI	GDGCHC	1 cut(s)	143
MluCI	AATT	2 cut(s)	15, 48
MluI	ACGCGT	1 cut(s)	196
MlyI	GAGTC	2 cut(s)	99, 404
MmeI	TCCRAC	2 cut(s)	168, 387
MnlI	CCTC	6 cut(s)	36, 55, 100, 103, 143, 277
MroI	TCCGGA	1 cut(s)	135
MseI	TTAA	1 cut(s)	173
MspA1I	CMGCKG	1 cut(s)	473
MspI	CCGG	2 cut(s)	136, 583
MspR9I	CCNGG	1 cut(s)	501
MvaI	CCWGG	1 cut(s)	501
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	541
NdeII	GATC	5 cut(s)	162, 262, 274, 430, 506
NheI	GCTAGC	1 cut(s)	424
NlaIII	CATG	2 cut(s)	75, 240
NlaIV	GGNNCC	2 cut(s)	303, 581
NmuCI	GTSAC	3 cut(s)	436, 449, 480
PcsI	WCGNNNNNNNCGW	2 cut(s)	153, 162
PfeI	GAWTC	1 cut(s)	65
PkrI	GCNGC	3 cut(s)	380, 472, 475
PleI	GAGTC	2 cut(s)	99, 404
PpsI	GAGTC	2 cut(s)	99, 404
Psp124BI	GAGCTC	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	499
PspGI	CCWGG	1 cut(s)	499
PspN4I	GGNNCC	2 cut(s)	303, 581
PspPI	GGNCC	2 cut(s)	130, 580
SacI	GAGCTC	1 cut(s)	143
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	3 cut(s)	379, 471, 474
Sau3AI	GATC	5 cut(s)	162, 262, 274, 430, 506
Sau96I	GGNCC	2 cut(s)	130, 580
SchI	GAGTC	2 cut(s)	99, 404
ScrFI	CCNGG	1 cut(s)	501
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	6 cut(s)	100, 125, 143, 150, 360, 482
SfaNI	GCATC	1 cut(s)	71
SinI	GGWCC	2 cut(s)	130, 580
Sse9I	AATT	2 cut(s)	15, 48
SsiI	CCGC	2 cut(s)	272, 473
SspMI	CTAG	2 cut(s)	425, 456
SstI	GAGCTC	1 cut(s)	143
StyD4I	CCNGG	1 cut(s)	499
StyI	CCWWGG	1 cut(s)	455
TaaI	ACNGT	2 cut(s)	217, 516
TaiI	ACGT	2 cut(s)	150, 482
TaqI	TCGA	3 cut(s)	77, 364, 505
TasI	AATT	2 cut(s)	15, 48
TauI	GCSGC	1 cut(s)	476
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TscAI	CASTG	3 cut(s)	121, 489, 519
TseFI	GTSAC	3 cut(s)	436, 449, 480
TseI	GCWGC	2 cut(s)	378, 470
Tsp45I	GTSAC	3 cut(s)	436, 449, 480
TspDTI	ATGAA	2 cut(s)	60, 224
TspRI	CASTG	3 cut(s)	121, 489, 519
VpaK11BI	GGWCC	2 cut(s)	130, 580
XmaJI	CCTAGG	1 cut(s)	455
XspI	CTAG	2 cut(s)	425, 456
ZraI	GACGTC	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.