RLG00000013410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0012604
Physical Location & Seq
Forward (+)
31171956 .. 31173254
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013410

Sequence Viewer

Length: 372 bp
ATGGTGAATGGAGACAACATCCAACATGCAATGGTGGAAAATGTCTGGTATAAGAAGATTACTGAGCAACCTGTAGATGTGGACATCAGCAATGTCAGTGTCCAAGTTTTGGGTTATGGAGATATTTCGATGGGTTATGTGTTGCTTTTCTTGTATGGGATTGTTTCAGTTGGTCTCCAAGTTTTCGCCGGCCGATATGTTGACGTTTCTGTGTCACCCTTGGGTTTGGCTGGTGGCGGCGATGTCACTGCGTCCTCTCTCTCCTGGTCGATCTGCACTATGGTTGAAGCTTGCTGGGCTGTTTGGGCCTGTTTGTTTTCGTTTGTTTTCGTTTGTTTGTTCTTTTACTTTGGGCTCGGTTTGGGTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.34

Weight (kDa)

4.12

Isoelectric Point (pI)

31.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 109
AciI CCGC 1 cut(s) 237
AcoI YGGCCR 1 cut(s) 190
AfiI CCNNNNNNNGG 1 cut(s) 109
AgsI TTSAA 1 cut(s) 287
AjnI CCWGG 1 cut(s) 263
AluBI AGCT 1 cut(s) 290
AluI AGCT 1 cut(s) 290
Alw26I GTCTC 2 cut(s) 6, 179
AoxI GGCC 2 cut(s) 190, 306
AspS9I GGNCC 1 cut(s) 306
AsuHPI GGTGA 2 cut(s) 16, 207
BanII GRGCYC 1 cut(s) 357
BccI CCATC 1 cut(s) 124
BcgI CGANNNNNNTGC 2 cut(s) 230, 264
BciT130I CCWGG 1 cut(s) 265
BcoDI GTCTC 2 cut(s) 6, 179
BfmI CTRYAG 1 cut(s) 72
BisI GCNGC 1 cut(s) 238
BlsI GCNGC 1 cut(s) 239
Bme1390I CCNGG 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 306
BmrFI CCNGG 1 cut(s) 265
BsaI GGTCTC 1 cut(s) 179
BsaJI CCNNGG 1 cut(s) 219
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse118I RCCGGY 1 cut(s) 188
Bse3DI GCAATG 2 cut(s) 36, 97
BseBI CCWGG 1 cut(s) 265
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 1 cut(s) 18
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMI GCAATG 2 cut(s) 36, 97
BseMII CTCAG 1 cut(s) 54
BseX3I CGGCCG 1 cut(s) 190
BseYI CCCAGC 1 cut(s) 294
BsgI GTGCAG 1 cut(s) 259
Bsh1285I CGRYCG 1 cut(s) 193
BshFI GGCC 2 cut(s) 192, 308
BsiEI CGRYCG 1 cut(s) 193
BsiSI CCGG 1 cut(s) 189
BslI CCNNNNNNNGG 1 cut(s) 109
BsmAI GTCTC 2 cut(s) 6, 179
BsnI GGCC 2 cut(s) 192, 308
Bso31I GGTCTC 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 357
Bsp143I GATC 1 cut(s) 270
BspACI CCGC 1 cut(s) 237
BspANI GGCC 2 cut(s) 192, 308
BspCNI CTCAG 1 cut(s) 55
BspTNI GGTCTC 1 cut(s) 179
BsrDI GCAATG 2 cut(s) 36, 97
BsrFI RCCGGY 1 cut(s) 188
BssAI RCCGGY 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 1 cut(s) 270
BssT1I CCWWGG 1 cut(s) 219
Bst2UI CCWGG 1 cut(s) 265
BstC8I GCNNGC 2 cut(s) 190, 292
BstDEI CTNAG 1 cut(s) 63
BstF5I GGATG 1 cut(s) 18
BstKTI GATC 1 cut(s) 273
BstMAI GTCTC 2 cut(s) 6, 179
BstMBI GATC 1 cut(s) 270
BstMCI CGRYCG 1 cut(s) 193
BstMWI GCNNNNNNNGC 2 cut(s) 296, 305
BstNI CCWGG 1 cut(s) 265
BstNSI RCATGY 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 263
BstSFI CTRYAG 1 cut(s) 72
BstZI CGGCCG 1 cut(s) 190
BsuRI GGCC 2 cut(s) 192, 308
BtgZI GCGATG 1 cut(s) 255
BtsCI GGATG 1 cut(s) 18
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 2 cut(s) 103, 246
Cac8I GCNNGC 2 cut(s) 190, 292
Cfr10I RCCGGY 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 306
CseI GACGC 1 cut(s) 240
CviAII CATG 1 cut(s) 26
CviJI RGCY 6 cut(s) 192, 230, 290, 299, 308, 355
CviKI_1 RGCY 6 cut(s) 192, 230, 290, 299, 308, 355
DdeI CTNAG 1 cut(s) 63
DpnI GATC 1 cut(s) 272
DpnII GATC 1 cut(s) 270
EaeI YGGCCR 1 cut(s) 190
EagI CGGCCG 1 cut(s) 190
EclXI CGGCCG 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 219
Eco24I GRGCYC 1 cut(s) 357
Eco31I GGTCTC 1 cut(s) 179
Eco52I CGGCCG 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 263
EcoT14I CCWWGG 1 cut(s) 219
EcoT38I GRGCYC 1 cut(s) 357
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 1 cut(s) 29
FaiI YATR 7 cut(s) 27, 51, 117, 138, 156, 198, 281
FatI CATG 1 cut(s) 25
Fnu4HI GCNGC 1 cut(s) 238
FokI GGATG 1 cut(s) 5
FriOI GRGCYC 1 cut(s) 357
Fsp4HI GCNGC 1 cut(s) 238
GluI GCNGC 1 cut(s) 238
GsaI CCCAGC 1 cut(s) 298
HaeIII GGCC 2 cut(s) 192, 308
HapII CCGG 1 cut(s) 189
HgaI GACGC 1 cut(s) 240
Hin1II CATG 1 cut(s) 29
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 1 cut(s) 288
HpaII CCGG 1 cut(s) 189
HphI GGTGA 2 cut(s) 16, 207
Hpy166II GTNNAC 2 cut(s) 82, 202
Hpy8I GTNNAC 2 cut(s) 82, 202
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 2 cut(s) 29, 276
HpyF10VI GCNNNNNNNGC 2 cut(s) 296, 305
HpyF3I CTNAG 1 cut(s) 63
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 1 cut(s) 29
KroI GCCGGC 1 cut(s) 188
KroNI GCCGGC 1 cut(s) 190
Kzo9I GATC 1 cut(s) 270
LpnPI CCDG 8 cut(s) 31, 84, 202, 216, 250, 277, 280, 322
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 2 cut(s) 213, 244
MalI GATC 1 cut(s) 272
MboI GATC 1 cut(s) 270
MboII GAAGA 1 cut(s) 67
MhlI GDGCHC 1 cut(s) 357
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 1 cut(s) 265
MroNI GCCGGC 1 cut(s) 188
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 1 cut(s) 265
MvaI CCWGG 1 cut(s) 265
MwoI GCNNNNNNNGC 2 cut(s) 296, 305
NaeI GCCGGC 1 cut(s) 190
NdeII GATC 1 cut(s) 270
NgoMIV GCCGGC 1 cut(s) 188
NlaIII CATG 1 cut(s) 29
NmuCI GTSAC 2 cut(s) 213, 244
NspI RCATGY 1 cut(s) 29
PdiI GCCGGC 1 cut(s) 190
PflMI CCANNNNNTGG 1 cut(s) 109
PkrI GCNGC 1 cut(s) 239
Psp6I CCWGG 1 cut(s) 263
PspFI CCCAGC 1 cut(s) 294
PspGI CCWGG 1 cut(s) 263
PspPI GGNCC 1 cut(s) 306
SatI GCNGC 1 cut(s) 238
Sau3AI GATC 1 cut(s) 270
Sau96I GGNCC 1 cut(s) 306
ScrFI CCNGG 1 cut(s) 265
SduI GDGCHC 1 cut(s) 357
SetI ASST 3 cut(s) 73, 207, 292
SfcI CTRYAG 1 cut(s) 72
SsiI CCGC 1 cut(s) 237
StyD4I CCNGG 1 cut(s) 263
StyI CCWWGG 1 cut(s) 219
TaiI ACGT 1 cut(s) 207
TaqI TCGA 2 cut(s) 128, 269
TauI GCSGC 1 cut(s) 240
TscAI CASTG 2 cut(s) 103, 253
TseFI GTSAC 2 cut(s) 213, 244
Tsp45I GTSAC 2 cut(s) 213, 244
TspRI CASTG 2 cut(s) 103, 253
Van91I CCANNNNNTGG 1 cut(s) 109
XceI RCATGY 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.