RchiOBHm_Chr1g0337621

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0012604
Physical Location & Seq
Forward (+)
29504376 .. 29504766
391 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56551

Sequence Viewer

Length: 285 bp
ATGTCCTTTCCATCATTTCTATCTTTACTTCTTCTTTCCTACTCTTTGTCTCAAATCTCTTATTCTTCATGGTTAAGATGCACATCCTCCTCACCCATCGGACTCCACTTCACTGATCGATCCTTGGTCCATCGGAGCTCCTTCGTCGGCGTCGCTTGGATTATCTGTTTAAGGGTCTGCATGAGGGTCTGCACTATCTTCAGCTATCTAGATTTGGGTTATGGAGATCTTTCGATGGATTCTATGCTGCTGTTCTTGCAAGGGATTATTTTGGTTGGACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.54

Weight (kDa)

7.69

Isoelectric Point (pI)

61.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 114
AcuI CTGAAG 1 cut(s) 184
AcyI GRCGYC 1 cut(s) 150
AluBI AGCT 2 cut(s) 138, 204
AluI AGCT 2 cut(s) 138, 204
Alw21I GWGCWC 1 cut(s) 140
Alw26I GTCTC 1 cut(s) 54
AlwI GGATC 1 cut(s) 114
ApeKI GCWGC 1 cut(s) 247
AspS9I GGNCC 1 cut(s) 127
AsuHPI GGTGA 1 cut(s) 84
AvaII GGWCC 1 cut(s) 127
BanII GRGCYC 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 140
BbvI GCAGC 1 cut(s) 234
BccI CCATC 4 cut(s) 19, 104, 138, 229
BcoDI GTCTC 1 cut(s) 54
BfaI CTAG 1 cut(s) 209
BglII AGATCT 1 cut(s) 226
BisI GCNGC 1 cut(s) 248
BlsI GCNGC 1 cut(s) 249
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 127
BmsI GCATC 1 cut(s) 68
Bsa29I ATCGAT 1 cut(s) 118
BsaBI GATNNNNATC 1 cut(s) 82
BsaHI GRCGYC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 123
Bse8I GATNNNNATC 1 cut(s) 82
BseCI ATCGAT 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 83
BseJI GATNNNNATC 1 cut(s) 82
BseRI GAGGAG 1 cut(s) 79
BseXI GCAGC 1 cut(s) 234
BsgI GTGCAG 1 cut(s) 175
BshVI ATCGAT 1 cut(s) 118
BsiHKAI GWGCWC 1 cut(s) 140
BsmAI GTCTC 1 cut(s) 54
Bsp1286I GDGCHC 1 cut(s) 140
Bsp143I GATC 3 cut(s) 115, 119, 226
BspDI ATCGAT 1 cut(s) 118
BspPI GGATC 1 cut(s) 114
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 3 cut(s) 115, 119, 226
BssNI GRCGYC 1 cut(s) 150
BssT1I CCWWGG 1 cut(s) 123
BstACI GRCGYC 1 cut(s) 150
BstF5I GGATG 1 cut(s) 83
BstKTI GATC 3 cut(s) 118, 122, 229
BstMAI GTCTC 1 cut(s) 54
BstMBI GATC 3 cut(s) 115, 119, 226
BstMWI GCNNNNNNNGC 1 cut(s) 256
BstV1I GCAGC 1 cut(s) 234
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
Bsu15I ATCGAT 1 cut(s) 118
BsuTUI ATCGAT 1 cut(s) 118
BtsCI GGATG 1 cut(s) 83
BtsIMutI CAGTG 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 127
ClaI ATCGAT 1 cut(s) 118
CseI GACGC 1 cut(s) 139
CviAII CATG 2 cut(s) 69, 181
CviJI RGCY 2 cut(s) 138, 204
CviKI_1 RGCY 2 cut(s) 138, 204
DpnI GATC 3 cut(s) 117, 121, 228
DpnII GATC 3 cut(s) 115, 119, 226
Ecl136II GAGCTC 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 123
Eco24I GRGCYC 1 cut(s) 140
Eco47I GGWCC 1 cut(s) 127
Eco53kI GAGCTC 1 cut(s) 138
Eco57I CTGAAG 1 cut(s) 184
EcoICRI GAGCTC 1 cut(s) 138
EcoT14I CCWWGG 1 cut(s) 123
EcoT38I GRGCYC 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 2 cut(s) 72, 184
FaiI YATR 4 cut(s) 70, 182, 222, 245
FatI CATG 2 cut(s) 68, 180
Fnu4HI GCNGC 1 cut(s) 248
FokI GGATG 1 cut(s) 70
FriOI GRGCYC 1 cut(s) 140
Fsp4HI GCNGC 1 cut(s) 248
FspBI CTAG 1 cut(s) 209
GluI GCNGC 1 cut(s) 248
HgaI GACGC 1 cut(s) 139
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 2 cut(s) 72, 184
HinfI GANTC 3 cut(s) 102, 239, 279
HphI GGTGA 1 cut(s) 84
Hpy188I TCNGA 2 cut(s) 101, 135
Hpy188III TCNNGA 1 cut(s) 209
Hpy99I CGWCG 2 cut(s) 149, 155
HpyAV CCTTC 1 cut(s) 151
HpyCH4V TGCA 4 cut(s) 81, 180, 192, 259
HpyF10VI GCNNNNNNNGC 1 cut(s) 256
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 2 cut(s) 72, 184
Kzo9I GATC 3 cut(s) 115, 119, 226
LmnI GCTCC 2 cut(s) 135, 143
Lsp1109I GCAGC 1 cut(s) 234
LweI GCATC 1 cut(s) 68
MaeI CTAG 1 cut(s) 209
MalI GATC 3 cut(s) 117, 121, 228
MboI GATC 3 cut(s) 115, 119, 226
MboII GAAGA 3 cut(s) 23, 57, 190
MflI RGATCY 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 140
MlyI GAGTC 2 cut(s) 96, 273
MmeI TCCRAC 1 cut(s) 256
MnlI CCTC 3 cut(s) 97, 100, 177
MseI TTAA 2 cut(s) 74, 170
MwoI GCNNNNNNNGC 1 cut(s) 256
NdeII GATC 3 cut(s) 115, 119, 226
NlaIII CATG 2 cut(s) 72, 184
PfeI GAWTC 1 cut(s) 239
PkrI GCNGC 1 cut(s) 249
PleI GAGTC 2 cut(s) 96, 273
PpsI GAGTC 2 cut(s) 96, 273
Psp124BI GAGCTC 1 cut(s) 140
PspPI GGNCC 1 cut(s) 127
PsuI RGATCY 1 cut(s) 226
SacI GAGCTC 1 cut(s) 140
SaqAI TTAA 2 cut(s) 74, 170
SatI GCNGC 1 cut(s) 248
Sau3AI GATC 3 cut(s) 115, 119, 226
Sau96I GGNCC 1 cut(s) 127
SchI GAGTC 2 cut(s) 96, 273
SduI GDGCHC 1 cut(s) 140
SetI ASST 2 cut(s) 140, 206
SfaNI GCATC 1 cut(s) 68
SgeI CNNG 7 cut(s) 81, 136, 168, 193, 221, 268, 272
SinI GGWCC 1 cut(s) 127
SspMI CTAG 1 cut(s) 209
SstI GAGCTC 1 cut(s) 140
StyI CCWWGG 1 cut(s) 123
TaqI TCGA 2 cut(s) 118, 233
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 2 cut(s) 74, 170
Tru9I TTAA 2 cut(s) 74, 170
TscAI CASTG 1 cut(s) 118
TseI GCWGC 1 cut(s) 247
TspDTI ATGAA 1 cut(s) 57
TspRI CASTG 1 cut(s) 118
VpaK11BI GGWCC 1 cut(s) 127
XbaI TCTAGA 1 cut(s) 208
XspI CTAG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.