Rroxscaffold_4G00302710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0012604
Physical Location & Seq
Reverse (-)
23083216 .. 23084379
1164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00302710.1

Sequence Viewer

Length: 447 bp
ATGAATACGGTAGTGCAACAAGGTTCTGCATGGTCTTTGGCCGTCTGTCCCTTTGATCCCTCTGTGGATCGTTTATTTTTTTTCTTCTTTGCTGGTTCCTTTGTTTGTTTCGGAGGCTGTTTTGTATGGTTTAGAGATTTGGGTTATGGAGATATTTCGATGGGTTCTGTCTTGCTTTTCTTGTATGGGATTGTTTCGGTTGGTCTCCAAGTTTTCGCCGGTCCATCTGGTAACATTTCTGTGTCACCCTTAGGTTTGGGTGGTGGCGGCGATGTCACTGCGTCCTCTCTCTCTGGTCGATCTGCACCGTGGTTGAAGCTTGCTGGGCTGTTTGGGCTTGTTTGTTTTTGTTTGTTTGTTCGTTCTTTTTCTTTGGGCCCGGTTTGGGTCTTTCACTTGTTATGTTGTTTCTTGTTGAATAAAAATCCTTCCATCGCCAAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

15.79

Weight (kDa)

8.55

Isoelectric Point (pI)

34.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 267
AclWI GGATC 2 cut(s) 50, 75
AcoI YGGCCR 1 cut(s) 39
AfiI CCNNNNNNNGG 1 cut(s) 385
AgsI TTSAA 2 cut(s) 316, 418
AluBI AGCT 1 cut(s) 319
AluI AGCT 1 cut(s) 319
Alw26I GTCTC 1 cut(s) 209
AlwI GGATC 2 cut(s) 50, 75
AoxI GGCC 2 cut(s) 39, 376
ApaI GGGCCC 1 cut(s) 380
AspS9I GGNCC 3 cut(s) 221, 376, 377
AsuC2I CCSGG 1 cut(s) 380
AsuHPI GGTGA 1 cut(s) 237
AvaII GGWCC 1 cut(s) 221
AxyI CCTNAGG 1 cut(s) 250
BaeGI GKGCMC 1 cut(s) 380
BanII GRGCYC 1 cut(s) 380
BccI CCATC 3 cut(s) 154, 232, 440
BceAI ACGGC 1 cut(s) 26
BcgI CGANNNNNNTGC 2 cut(s) 260, 294
BcnI CCSGG 1 cut(s) 380
BcoDI GTCTC 1 cut(s) 209
BisI GCNGC 1 cut(s) 268
BlsI GCNGC 1 cut(s) 269
Bme1390I CCNGG 1 cut(s) 380
Bme18I GGWCC 1 cut(s) 221
BmgT120I GGNCC 3 cut(s) 221, 376, 377
BmiI GGNNCC 2 cut(s) 97, 378
BmrFI CCNGG 1 cut(s) 380
BpuMI CCSGG 1 cut(s) 380
BsaI GGTCTC 1 cut(s) 209
BsaJI CCNNGG 1 cut(s) 308
Bsc4I CCNNNNNNNGG 1 cut(s) 385
Bse118I RCCGGY 1 cut(s) 218
Bse21I CCTNAGG 1 cut(s) 250
BseDI CCNNGG 1 cut(s) 308
BseLI CCNNNNNNNGG 1 cut(s) 385
BseSI GKGCMC 1 cut(s) 380
BseYI CCCAGC 1 cut(s) 323
BsgI GTGCAG 1 cut(s) 288
BshFI GGCC 2 cut(s) 41, 378
BsiSI CCGG 2 cut(s) 219, 380
BslFI GGGAC 1 cut(s) 33
BslI CCNNNNNNNGG 1 cut(s) 385
BsmAI GTCTC 1 cut(s) 209
BsmFI GGGAC 1 cut(s) 33
BsnI GGCC 2 cut(s) 41, 378
Bso31I GGTCTC 1 cut(s) 209
Bsp120I GGGCCC 1 cut(s) 376
Bsp1286I GDGCHC 1 cut(s) 380
Bsp143I GATC 3 cut(s) 55, 67, 299
BspACI CCGC 1 cut(s) 267
BspANI GGCC 2 cut(s) 41, 378
BspLI GGNNCC 2 cut(s) 97, 378
BspPI GGATC 2 cut(s) 50, 75
BspTNI GGTCTC 1 cut(s) 209
BsrFI RCCGGY 1 cut(s) 218
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 308
BssMI GATC 3 cut(s) 55, 67, 299
Bst4CI ACNGT 2 cut(s) 10, 309
BstC8I GCNNGC 1 cut(s) 321
BstDEI CTNAG 1 cut(s) 250
BstDSI CCRYGG 1 cut(s) 308
BstKTI GATC 3 cut(s) 58, 70, 302
BstMAI GTCTC 1 cut(s) 209
BstMBI GATC 3 cut(s) 55, 67, 299
BstMWI GCNNNNNNNGC 2 cut(s) 325, 334
BstSCI CCNGG 1 cut(s) 378
BstSLI GKGCMC 1 cut(s) 380
Bsu36I CCTNAGG 1 cut(s) 250
BsuRI GGCC 2 cut(s) 41, 378
BtgI CCRYGG 1 cut(s) 308
BtgZI GCGATG 2 cut(s) 285, 418
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 276
Cac8I GCNNGC 1 cut(s) 321
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 3 cut(s) 221, 376, 377
CseI GACGC 1 cut(s) 270
CviAII CATG 1 cut(s) 30
CviJI RGCY 6 cut(s) 41, 117, 319, 328, 337, 378
CviKI_1 RGCY 6 cut(s) 41, 117, 319, 328, 337, 378
DdeI CTNAG 1 cut(s) 250
DpnI GATC 3 cut(s) 57, 69, 301
DpnII GATC 3 cut(s) 55, 67, 299
EaeI YGGCCR 1 cut(s) 39
Eco24I GRGCYC 1 cut(s) 380
Eco31I GGTCTC 1 cut(s) 209
Eco47I GGWCC 1 cut(s) 221
Eco81I CCTNAGG 1 cut(s) 250
EcoT38I GRGCYC 1 cut(s) 380
FaeI CATG 1 cut(s) 33
FaiI YATR 5 cut(s) 31, 127, 147, 186, 403
FaqI GGGAC 1 cut(s) 33
FatI CATG 1 cut(s) 29
Fnu4HI GCNGC 1 cut(s) 268
FriOI GRGCYC 1 cut(s) 380
Fsp4HI GCNGC 1 cut(s) 268
GluI GCNGC 1 cut(s) 268
GsaI CCCAGC 1 cut(s) 327
HaeIII GGCC 2 cut(s) 41, 378
HapII CCGG 2 cut(s) 219, 380
HgaI GACGC 1 cut(s) 270
Hin1II CATG 1 cut(s) 33
HindIII AAGCTT 1 cut(s) 317
HpaII CCGG 2 cut(s) 219, 380
HphI GGTGA 1 cut(s) 237
Hpy188I TCNGA 1 cut(s) 113
HpyAV CCTTC 1 cut(s) 438
HpyCH4III ACNGT 2 cut(s) 10, 309
HpyCH4V TGCA 3 cut(s) 16, 29, 305
HpyF10VI GCNNNNNNNGC 2 cut(s) 325, 334
HpyF3I CTNAG 1 cut(s) 250
Hsp92II CATG 1 cut(s) 33
Kzo9I GATC 3 cut(s) 55, 67, 299
LpnPI CCDG 6 cut(s) 78, 213, 232, 279, 309, 393
MaeIII GTNAC 3 cut(s) 230, 243, 274
MalI GATC 3 cut(s) 57, 69, 301
MboI GATC 3 cut(s) 55, 67, 299
MboII GAAGA 1 cut(s) 76
MhlI GDGCHC 1 cut(s) 380
MnlI CCTC 3 cut(s) 70, 107, 295
MslI CAYNNNNRTG 1 cut(s) 239
MspI CCGG 2 cut(s) 219, 380
MspR9I CCNGG 1 cut(s) 380
MwoI GCNNNNNNNGC 2 cut(s) 325, 334
NciI CCSGG 1 cut(s) 380
NdeII GATC 3 cut(s) 55, 67, 299
NlaIII CATG 1 cut(s) 33
NlaIV GGNNCC 2 cut(s) 97, 378
NmuCI GTSAC 2 cut(s) 243, 274
PkrI GCNGC 1 cut(s) 269
PspFI CCCAGC 1 cut(s) 323
PspN4I GGNNCC 2 cut(s) 97, 378
PspOMI GGGCCC 1 cut(s) 376
PspPI GGNCC 3 cut(s) 221, 376, 377
RseI CAYNNNNRTG 1 cut(s) 239
SatI GCNGC 1 cut(s) 268
Sau3AI GATC 3 cut(s) 55, 67, 299
Sau96I GGNCC 3 cut(s) 221, 376, 377
ScrFI CCNGG 1 cut(s) 380
SduI GDGCHC 1 cut(s) 380
SetI ASST 3 cut(s) 25, 256, 321
SinI GGWCC 1 cut(s) 221
SmiMI CAYNNNNRTG 1 cut(s) 239
SsiI CCGC 1 cut(s) 267
StyD4I CCNGG 1 cut(s) 378
TaaI ACNGT 2 cut(s) 10, 309
TaqI TCGA 2 cut(s) 158, 298
TauI GCSGC 1 cut(s) 270
TscAI CASTG 1 cut(s) 283
TseFI GTSAC 2 cut(s) 243, 274
Tsp45I GTSAC 2 cut(s) 243, 274
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 283
VpaK11BI GGWCC 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.