Rroxscaffold_1G00053350

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0012604
Physical Location & Seq
Reverse (-)
74205185 .. 74213014
7830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00053350.1

Sequence Viewer

Length: 1110 bp
ATGACCAACGCCCAGCCTCGCCAAATAAATCCATCCCGCATCAGATCGAAAATAACTAATCCAGCATTGAACCGATCCGATCGGACCCGAGCCACGCCATCACAACCACCGCGCCACCCAACAAGCGTCGACCTAGCTCGCTCCACCAAGCCATTTCGCCGACTAGACCATCGAGGGACACACCAAAGCCCGACAGCGGCCTCGATCTCCCCTTCCTCACCACAAGAACCGCCATCGCAATCTCCTCAATCCTATCCGGACGTCTATCGAGGACTCCATCTTACCGCAGACCCACACAGGCCGACAAAGGCTCGTCCGATGACCGCAGAAGGGCTCACCACCGGACAAGAAGGAAGAAGCCAATTTTTCTCTCGGGCGCGTGAACTAGCGTGTAAAGTTTCATTTATTGTTGTAATGCTTAATTGTGTCGATGATGTTTTATATGGCAATGGGATTTGGATAGTAGAGATCTTGTGTTTGTTTGGATGGGTTCTGTTTAGGTGTTTTTGCGTTGGATTGATTTGGCCGGATTCCAAACTTTTTGTGGCTGATTACGTAACGTCTCCGTGTCACGATCAGTTTCAGTTTAAGACGGCGATACCGACACGACTTCTCGCTAACTTTGCACTTGGGCTGAGGCTTGTTAAGCTTATCAATGGAAGATTGGGAAAAACTAAGATTAGGAAGAGAAAAAAACCGAAGCTGATGAAGAGAAGAACAAGAACGTTAACTCATCTCCTGGTAAAGCATGAATGGAAGAATATTGATGAGGAAACACTGATTAACCTTCATGGGGTCATGTTAAGGCCAAGTTACTGCCACCGTCACCGTCACCGTCACAACGGCATATCCCAATCTCGTCAGCCACCTAAAACCACCACCATCCTATATGATTTGACCACACTACCCGCACCAGAAACTCTGCAACCAAAAACGCCACCCGTGGAAACACGAAATTTACACTACGAAGACACAGTCCAACCGGTCGTATTGTGTCAGACACATTTCAGATCCGTTTCGGACGTTACAACCTCCGAAATTAAATACAGTCCCTCTTCCGTAATTCTGACCAATTTCATGCCTGGTTTCGTCGCCCGGAAAAGGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

369

Amino Acids

42.07

Weight (kDa)

10.36

Isoelectric Point (pI)

58.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 264
AccI GTMKAC 1 cut(s) 129
AccII CGCG 2 cut(s) 112, 379
AccIII TCCGGA 1 cut(s) 256
AciI CCGC 7 cut(s) 37, 110, 197, 230, 285, 324, 909
AclI AACGTT 1 cut(s) 725
AclWI GGATC 2 cut(s) 69, 1005
AcoI YGGCCR 1 cut(s) 524
AcsI RAATTY 1 cut(s) 955
AcyI GRCGYC 1 cut(s) 261
AfiI CCNNNNNNNGG 4 cut(s) 196, 330, 793, 1101
AgeI ACCGGT 1 cut(s) 982
AgsI TTSAA 1 cut(s) 70
AjnI CCWGG 2 cut(s) 738, 1081
AluBI AGCT 3 cut(s) 137, 649, 703
AluI AGCT 3 cut(s) 137, 649, 703
Alw26I GTCTC 1 cut(s) 567
AlwI GGATC 2 cut(s) 69, 1005
Ama87I CYCGRG 2 cut(s) 87, 372
Aor13HI TCCGGA 1 cut(s) 256
AoxI GGCC 4 cut(s) 198, 299, 524, 806
ApoI RAATTY 1 cut(s) 955
ArsI GACNNNNNNTTYG 2 cut(s) 960, 992
AsiGI ACCGGT 1 cut(s) 982
AspLEI GCGC 2 cut(s) 114, 379
AspS9I GGNCC 1 cut(s) 84
AsuC2I CCSGG 1 cut(s) 1096
AsuHPI GGTGA 4 cut(s) 210, 328, 818, 824
AvaI CYCGRG 2 cut(s) 87, 372
AvaII GGWCC 1 cut(s) 84
BanII GRGCYC 1 cut(s) 336
BbsI GAAGAC 1 cut(s) 975
BbvCI CCTCAGC 1 cut(s) 635
BccI CCATC 7 cut(s) 40, 106, 177, 241, 285, 480, 890
BceAI ACGGC 2 cut(s) 609, 859
BciT130I CCWGG 2 cut(s) 740, 1083
BcnI CCSGG 1 cut(s) 1096
BcoDI GTCTC 1 cut(s) 567
BfaI CTAG 3 cut(s) 134, 164, 386
BglII AGATCT 1 cut(s) 468
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
Bme1390I CCNGG 3 cut(s) 740, 1083, 1096
Bme18I GGWCC 1 cut(s) 84
BmeT110I CYCGRG 2 cut(s) 87, 372
BmgT120I GGNCC 1 cut(s) 84
BmiI GGNNCC 1 cut(s) 86
BmrFI CCNGG 3 cut(s) 740, 1083, 1096
BmsI GCATC 1 cut(s) 48
BpiI GAAGAC 1 cut(s) 975
Bpu10I CCTNAGC 1 cut(s) 635
BpuMI CCSGG 1 cut(s) 1096
BsaAI YACGTR 1 cut(s) 556
BsaHI GRCGYC 1 cut(s) 261
BsaJI CCNNGG 1 cut(s) 942
BsaWI WCCGGW 3 cut(s) 256, 341, 982
Bsc4I CCNNNNNNNGG 4 cut(s) 196, 330, 793, 1101
Bse118I RCCGGY 1 cut(s) 982
Bse3DI GCAATG 1 cut(s) 454
BseAI TCCGGA 1 cut(s) 256
BseBI CCWGG 2 cut(s) 740, 1083
BseDI CCNNGG 1 cut(s) 942
BseGI GGATG 3 cut(s) 32, 491, 882
BseLI CCNNNNNNNGG 4 cut(s) 196, 330, 793, 1101
BseMI GCAATG 1 cut(s) 454
BseMII CTCAG 1 cut(s) 626
BseRI GAGGAG 1 cut(s) 234
BseYI CCCAGC 1 cut(s) 12
Bsh1236I CGCG 2 cut(s) 112, 379
Bsh1285I CGRYCG 2 cut(s) 82, 987
BshFI GGCC 4 cut(s) 200, 301, 526, 808
BshTI ACCGGT 1 cut(s) 982
BsiEI CGRYCG 2 cut(s) 82, 987
BsiHKCI CYCGRG 2 cut(s) 87, 372
BsiSI CCGG 5 cut(s) 257, 342, 527, 983, 1096
BslFI GGGAC 2 cut(s) 190, 1035
BslI CCNNNNNNNGG 4 cut(s) 196, 330, 793, 1101
BsmAI GTCTC 1 cut(s) 567
BsmBI CGTCTC 1 cut(s) 567
BsmFI GGGAC 2 cut(s) 190, 1035
BsnI GGCC 4 cut(s) 200, 301, 526, 808
BsoBI CYCGRG 2 cut(s) 87, 372
Bsp1286I GDGCHC 1 cut(s) 336
Bsp13I TCCGGA 1 cut(s) 256
Bsp143I GATC 7 cut(s) 44, 74, 79, 204, 468, 574, 1010
BspACI CCGC 7 cut(s) 37, 110, 197, 230, 285, 324, 909
BspANI GGCC 4 cut(s) 200, 301, 526, 808
BspCNI CTCAG 1 cut(s) 627
BspEI TCCGGA 1 cut(s) 256
BspFNI CGCG 2 cut(s) 112, 379
BspLI GGNNCC 1 cut(s) 86
BspPI GGATC 2 cut(s) 69, 1005
BsrDI GCAATG 1 cut(s) 454
BsrFI RCCGGY 1 cut(s) 982
BssAI RCCGGY 1 cut(s) 982
BssECI CCNNGG 1 cut(s) 942
BssMI GATC 7 cut(s) 44, 74, 79, 204, 468, 574, 1010
BssNI GRCGYC 1 cut(s) 261
Bst2UI CCWGG 2 cut(s) 740, 1083
Bst4CI ACNGT 5 cut(s) 824, 830, 836, 976, 1049
Bst6I CTCTTC 3 cut(s) 680, 704, 1060
BstACI GRCGYC 1 cut(s) 261
BstBAI YACGTR 1 cut(s) 556
BstC8I GCNNGC 1 cut(s) 139
BstDEI CTNAG 2 cut(s) 635, 675
BstDSI CCRYGG 1 cut(s) 942
BstF5I GGATG 3 cut(s) 32, 491, 882
BstFNI CGCG 2 cut(s) 112, 379
BstHHI GCGC 2 cut(s) 114, 379
BstKTI GATC 7 cut(s) 47, 77, 82, 207, 471, 577, 1013
BstMAI GTCTC 1 cut(s) 567
BstMBI GATC 7 cut(s) 44, 74, 79, 204, 468, 574, 1010
BstMCI CGRYCG 2 cut(s) 82, 987
BstMWI GCNNNNNNNGC 2 cut(s) 623, 646
BstNI CCWGG 2 cut(s) 740, 1083
BstSCI CCNGG 3 cut(s) 738, 1081, 1094
BstSNI TACGTA 1 cut(s) 556
BstUI CGCG 2 cut(s) 112, 379
BstV2I GAAGAC 1 cut(s) 975
BstX2I RGATCY 2 cut(s) 468, 1010
BstYI RGATCY 2 cut(s) 468, 1010
BsuRI GGCC 4 cut(s) 200, 301, 526, 808
BtgI CCRYGG 1 cut(s) 942
BtgZI GCGATG 1 cut(s) 219
BtsCI GGATG 3 cut(s) 32, 491, 882
BtsIMutI CAGTG 1 cut(s) 776
Cac8I GCNNGC 1 cut(s) 139
CfoI GCGC 2 cut(s) 114, 379
Cfr10I RCCGGY 1 cut(s) 982
Cfr13I GGNCC 1 cut(s) 84
CseI GACGC 1 cut(s) 115
CspAI ACCGGT 1 cut(s) 982
CviAII CATG 4 cut(s) 749, 791, 799, 1078
DdeI CTNAG 2 cut(s) 635, 675
DpnI GATC 7 cut(s) 46, 76, 81, 206, 470, 576, 1012
DpnII GATC 7 cut(s) 44, 74, 79, 204, 468, 574, 1010
EaeI YGGCCR 1 cut(s) 524
Eam1104I CTCTTC 3 cut(s) 680, 704, 1060
EarI CTCTTC 3 cut(s) 680, 704, 1060
Eco105I TACGTA 1 cut(s) 556
Eco24I GRGCYC 1 cut(s) 336
Eco47I GGWCC 1 cut(s) 84
Eco88I CYCGRG 2 cut(s) 87, 372
EcoRII CCWGG 2 cut(s) 738, 1081
EcoT38I GRGCYC 1 cut(s) 336
Esp3I CGTCTC 1 cut(s) 567
FaeI CATG 4 cut(s) 752, 794, 802, 1081
FaiI YATR 9 cut(s) 442, 444, 750, 792, 800, 848, 889, 891, 1079
FaqI GGGAC 2 cut(s) 190, 1035
FatI CATG 4 cut(s) 748, 790, 798, 1077
FauI CCCGC 2 cut(s) 44, 916
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 1 cut(s) 198
FokI GGATG 3 cut(s) 19, 498, 869
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 3 cut(s) 134, 164, 386
GlaI GCGC 2 cut(s) 113, 378
GluI GCNGC 1 cut(s) 198
GsaI CCCAGC 1 cut(s) 16
HaeIII GGCC 4 cut(s) 200, 301, 526, 808
HapII CCGG 5 cut(s) 257, 342, 527, 983, 1096
HgaI GACGC 1 cut(s) 115
HhaI GCGC 2 cut(s) 114, 379
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 4 cut(s) 752, 794, 802, 1081
Hin6I GCGC 2 cut(s) 112, 377
HinP1I GCGC 2 cut(s) 112, 377
HincII GTYRAC 2 cut(s) 130, 729
HindII GTYRAC 2 cut(s) 130, 729
HindIII AAGCTT 1 cut(s) 647
HinfI GANTC 2 cut(s) 273, 530
HpaI GTTAAC 1 cut(s) 729
HpaII CCGG 5 cut(s) 257, 342, 527, 983, 1096
HphI GGTGA 4 cut(s) 210, 328, 818, 824
Hpy166II GTNNAC 3 cut(s) 130, 383, 729
Hpy188I TCNGA 9 cut(s) 44, 79, 84, 318, 999, 1010, 1021, 1036, 1068
Hpy188III TCNNGA 2 cut(s) 257, 572
Hpy8I GTNNAC 3 cut(s) 130, 383, 729
Hpy99I CGWCG 2 cut(s) 131, 1094
HpyAV CCTTC 4 cut(s) 222, 323, 344, 797
HpyCH4III ACNGT 5 cut(s) 824, 830, 836, 976, 1049
HpyCH4IV ACGT 5 cut(s) 261, 555, 560, 725, 1023
HpyCH4V TGCA 2 cut(s) 626, 925
HpyF10VI GCNNNNNNNGC 2 cut(s) 623, 646
HpyF3I CTNAG 2 cut(s) 635, 675
HpySE526I ACGT 5 cut(s) 261, 555, 560, 725, 1023
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 4 cut(s) 752, 794, 802, 1081
HspAI GCGC 2 cut(s) 112, 377
Kpn2I TCCGGA 1 cut(s) 256
KspAI GTTAAC 1 cut(s) 729
Kzo9I GATC 7 cut(s) 44, 74, 79, 204, 468, 574, 1010
LmnI GCTCC 1 cut(s) 146
LweI GCATC 1 cut(s) 48
MaeI CTAG 3 cut(s) 134, 164, 386
MaeII ACGT 5 cut(s) 261, 555, 560, 725, 1023
MaeIII GTNAC 7 cut(s) 556, 569, 812, 824, 830, 836, 1024
MalI GATC 7 cut(s) 46, 76, 81, 206, 470, 576, 1012
MboI GATC 7 cut(s) 44, 74, 79, 204, 468, 574, 1010
MboII GAAGA 8 cut(s) 366, 672, 697, 721, 726, 769, 980, 1047
MflI RGATCY 2 cut(s) 468, 1010
MhlI GDGCHC 1 cut(s) 336
MluCI AATT 6 cut(s) 362, 421, 955, 1038, 1062, 1072
MlyI GAGTC 1 cut(s) 267
MmeI TCCRAC 2 cut(s) 493, 1003
MroI TCCGGA 1 cut(s) 256
MseI TTAA 7 cut(s) 420, 588, 645, 728, 783, 803, 1041
MspA1I CMGCKG 1 cut(s) 197
MspI CCGG 5 cut(s) 257, 342, 527, 983, 1096
MspR9I CCNGG 3 cut(s) 740, 1083, 1096
MvaI CCWGG 2 cut(s) 740, 1083
MvnI CGCG 2 cut(s) 112, 379
MwoI GCNNNNNNNGC 2 cut(s) 623, 646
NciI CCSGG 1 cut(s) 1096
NdeII GATC 7 cut(s) 44, 74, 79, 204, 468, 574, 1010
NlaIII CATG 4 cut(s) 752, 794, 802, 1081
NlaIV GGNNCC 1 cut(s) 86
NmuCI GTSAC 4 cut(s) 569, 824, 830, 836
PcsI WCGNNNNNNNCGW 1 cut(s) 599
PfeI GAWTC 1 cut(s) 530
PflFI GACNNNGTC 1 cut(s) 974
PinAI ACCGGT 1 cut(s) 982
PkrI GCNGC 1 cut(s) 199
Ple19I CGATCG 1 cut(s) 82
PleI GAGTC 1 cut(s) 267
PpsI GAGTC 1 cut(s) 267
Ppu21I YACGTR 1 cut(s) 556
Psp1406I AACGTT 1 cut(s) 725
Psp6I CCWGG 2 cut(s) 738, 1081
PspFI CCCAGC 1 cut(s) 12
PspGI CCWGG 2 cut(s) 738, 1081
PspN4I GGNNCC 1 cut(s) 86
PspPI GGNCC 1 cut(s) 84
PsuI RGATCY 2 cut(s) 468, 1010
PsyI GACNNNGTC 1 cut(s) 974
PvuI CGATCG 1 cut(s) 82
SalI GTCGAC 1 cut(s) 128
SaqAI TTAA 7 cut(s) 420, 588, 645, 728, 783, 803, 1041
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 7 cut(s) 44, 74, 79, 204, 468, 574, 1010
Sau96I GGNCC 1 cut(s) 84
SchI GAGTC 1 cut(s) 267
ScrFI CCNGG 3 cut(s) 740, 1083, 1096
SduI GDGCHC 1 cut(s) 336
SfaNI GCATC 1 cut(s) 48
SinI GGWCC 1 cut(s) 84
SnaBI TACGTA 1 cut(s) 556
Sse9I AATT 6 cut(s) 362, 421, 955, 1038, 1062, 1072
SsiI CCGC 7 cut(s) 37, 110, 197, 230, 285, 324, 909
SspI AATATT 1 cut(s) 763
SspMI CTAG 3 cut(s) 134, 164, 386
StyD4I CCNGG 3 cut(s) 738, 1081, 1094
TaaI ACNGT 5 cut(s) 824, 830, 836, 976, 1049
TaiI ACGT 5 cut(s) 264, 558, 563, 728, 1026
TaqI TCGA 6 cut(s) 47, 129, 172, 203, 268, 429
TasI AATT 6 cut(s) 362, 421, 955, 1038, 1062, 1072
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 1 cut(s) 530
Tru1I TTAA 7 cut(s) 420, 588, 645, 728, 783, 803, 1041
Tru9I TTAA 7 cut(s) 420, 588, 645, 728, 783, 803, 1041
TscAI CASTG 1 cut(s) 783
TseFI GTSAC 4 cut(s) 569, 824, 830, 836
Tsp45I GTSAC 4 cut(s) 569, 824, 830, 836
TspDTI ATGAA 5 cut(s) 390, 722, 765, 779, 1066
TspGWI ACGGA 3 cut(s) 555, 1003, 1048
TspRI CASTG 1 cut(s) 783
Tth111I GACNNNGTC 1 cut(s) 974
VpaK11BI GGWCC 1 cut(s) 84
XapI RAATTY 1 cut(s) 955
XcmI CCANNNNNNNNNTGG 1 cut(s) 541
XmiI GTMKAC 1 cut(s) 129
XspI CTAG 3 cut(s) 134, 164, 386
ZraI GACGTC 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.