RchiOBHm_Chr2g0156151

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
72878856 .. 72879567
712 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52499

Sequence Viewer

Length: 252 bp
ATGGGTTCTATGCTGCTGTACTTGCACGTGATTGTTTTGGTTGGACTCCATGTCTTCGTCGGCAGATCTGGTGACGTTTCTGTGTCACCTTTGGGCTTGGCTGGTGGCGGCGACGTCACTACGTCATCTCTCTCCTGTTCGGTCTGCACTGTGGCTGAAGATTGTAGGGCTATTTGGTTTTGTTTATTGTTGTTTGTTGGTTTTATTTGGGCCCGTTTTGGGTCTTTTGTTTGTAATGGTGTTCTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

8.74

Weight (kDa)

5.96

Isoelectric Point (pI)

29.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 117
AciI CCGC 1 cut(s) 108
AcuI CTGAAG 1 cut(s) 177
AcvI CACGTG 1 cut(s) 28
AcyI GRCGYC 1 cut(s) 114
AfaI GTAC 1 cut(s) 20
AfiI CCNNNNNNNGG 1 cut(s) 219
AhdI GACNNNNNGTC 1 cut(s) 50
AoxI GGCC 1 cut(s) 210
ApaI GGGCCC 1 cut(s) 214
ApeKI GCWGC 1 cut(s) 13
AspS9I GGNCC 2 cut(s) 210, 211
AsuHPI GGTGA 2 cut(s) 78, 83
BaeGI GKGCMC 1 cut(s) 214
BanII GRGCYC 1 cut(s) 214
BbrPI CACGTG 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 46
BglII AGATCT 1 cut(s) 65
BisI GCNGC 2 cut(s) 14, 109
BlsI GCNGC 2 cut(s) 15, 110
BmeRI GACNNNNNGTC 1 cut(s) 50
BmgT120I GGNCC 2 cut(s) 210, 211
BmiI GGNNCC 1 cut(s) 212
BpiI GAAGAC 1 cut(s) 46
BsaAI YACGTR 1 cut(s) 28
BsaHI GRCGYC 1 cut(s) 114
Bsc4I CCNNNNNNNGG 1 cut(s) 219
BseLI CCNNNNNNNGG 1 cut(s) 219
BseSI GKGCMC 1 cut(s) 214
BsgI GTGCAG 1 cut(s) 130
BshFI GGCC 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 219
BsnI GGCC 1 cut(s) 212
Bsp120I GGGCCC 1 cut(s) 210
Bsp1286I GDGCHC 1 cut(s) 214
Bsp143I GATC 1 cut(s) 65
BspACI CCGC 1 cut(s) 108
BspANI GGCC 1 cut(s) 212
BspLI GGNNCC 1 cut(s) 212
BssMI GATC 1 cut(s) 65
BssNI GRCGYC 1 cut(s) 114
Bst4CI ACNGT 1 cut(s) 151
BstACI GRCGYC 1 cut(s) 114
BstBAI YACGTR 1 cut(s) 28
BstKTI GATC 1 cut(s) 68
BstMBI GATC 1 cut(s) 65
BstMWI GCNNNNNNNGC 1 cut(s) 22
BstSLI GKGCMC 1 cut(s) 214
BstV2I GAAGAC 1 cut(s) 46
BstX2I RGATCY 1 cut(s) 65
BstYI RGATCY 1 cut(s) 65
BsuRI GGCC 1 cut(s) 212
BtsIMutI CAGTG 1 cut(s) 147
Cfr13I GGNCC 2 cut(s) 210, 211
Csp6I GTAC 1 cut(s) 19
CviAII CATG 1 cut(s) 50
CviJI RGCY 5 cut(s) 96, 101, 155, 170, 212
CviKI_1 RGCY 5 cut(s) 96, 101, 155, 170, 212
CviQI GTAC 1 cut(s) 19
DpnI GATC 1 cut(s) 67
DpnII GATC 1 cut(s) 65
DriI GACNNNNNGTC 1 cut(s) 50
Eam1105I GACNNNNNGTC 1 cut(s) 50
Eco24I GRGCYC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 177
Eco72I CACGTG 1 cut(s) 28
EcoT38I GRGCYC 1 cut(s) 214
FaeI CATG 1 cut(s) 53
FaiI YATR 2 cut(s) 11, 51
FatI CATG 1 cut(s) 49
Fnu4HI GCNGC 2 cut(s) 14, 109
FriOI GRGCYC 1 cut(s) 214
Fsp4HI GCNGC 2 cut(s) 14, 109
GluI GCNGC 2 cut(s) 14, 109
HaeIII GGCC 1 cut(s) 212
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 1 cut(s) 53
HinfI GANTC 1 cut(s) 45
HphI GGTGA 2 cut(s) 78, 83
Hpy99I CGWCG 2 cut(s) 62, 116
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4IV ACGT 4 cut(s) 27, 75, 114, 122
HpyCH4V TGCA 2 cut(s) 25, 147
HpyF10VI GCNNNNNNNGC 1 cut(s) 22
HpySE526I ACGT 4 cut(s) 27, 75, 114, 122
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 1 cut(s) 53
Kzo9I GATC 1 cut(s) 65
LpnPI CCDG 3 cut(s) 54, 87, 148
MaeII ACGT 4 cut(s) 27, 75, 114, 122
MaeIII GTNAC 3 cut(s) 71, 84, 115
MalI GATC 1 cut(s) 67
MboI GATC 1 cut(s) 65
MboII GAAGA 2 cut(s) 46, 170
MflI RGATCY 1 cut(s) 65
MhlI GDGCHC 1 cut(s) 214
MlyI GAGTC 1 cut(s) 39
MmeI TCCRAC 1 cut(s) 22
MwoI GCNNNNNNNGC 1 cut(s) 22
NdeII GATC 1 cut(s) 65
NlaIII CATG 1 cut(s) 53
NlaIV GGNNCC 1 cut(s) 212
NmuCI GTSAC 3 cut(s) 71, 84, 115
PkrI GCNGC 2 cut(s) 15, 110
PleI GAGTC 1 cut(s) 39
PmaCI CACGTG 1 cut(s) 28
PmlI CACGTG 1 cut(s) 28
PpsI GAGTC 1 cut(s) 39
Ppu21I YACGTR 1 cut(s) 28
PspCI CACGTG 1 cut(s) 28
PspN4I GGNNCC 1 cut(s) 212
PspOMI GGGCCC 1 cut(s) 210
PspPI GGNCC 2 cut(s) 210, 211
PsuI RGATCY 1 cut(s) 65
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SatI GCNGC 2 cut(s) 14, 109
Sau3AI GATC 1 cut(s) 65
Sau96I GGNCC 2 cut(s) 210, 211
SchI GAGTC 1 cut(s) 39
SduI GDGCHC 1 cut(s) 214
SetI ASST 5 cut(s) 30, 78, 91, 117, 125
SgeI CNNG 9 cut(s) 34, 38, 40, 62, 81, 109, 114, 147, 225
SsiI CCGC 1 cut(s) 108
TaaI ACNGT 1 cut(s) 151
TaiI ACGT 4 cut(s) 30, 78, 117, 125
TaqII GACCGA 1 cut(s) 130
TatI WGTACW 1 cut(s) 18
TauI GCSGC 1 cut(s) 111
TscAI CASTG 1 cut(s) 154
TseFI GTSAC 3 cut(s) 71, 84, 115
TseI GCWGC 1 cut(s) 13
Tsp45I GTSAC 3 cut(s) 71, 84, 115
TspRI CASTG 1 cut(s) 154
ZraI GACGTC 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.