Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004854

Physical Location & Seq

Genomic Coordinates Reverse (-)

21815563 .. 21816408

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g17821.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGATTCCAACAGAATCACCAAGCTGAGGCCGTTTCTACTTGACCCTGAAAAAGAGTACTTCTTCACCTCCAGCTCCACTTCTAAAATAACATCGCGCGATGATCACAGCTCCCCAGGACAAAAGAAGTGTCTAAATCTTGTGCGCGGTTGCCAAACTTCTAATGTCTTGATCCTCGACGATATAAGAAACGTATGGGCAAAGGAAAATCAGGACAATTTGATAGTAATGCAGAAGTACAATTTCTTCAAATCCGCTTGTCATACAATGTACCTCAATAATGGTACCAGCAGTCAATCTCATGCTGAGTTAAGGACCGATGAAACCGTTTATCTTGAACACATTCTTCGTTGTCTTAAGCGAATCCATGATATCTGGACCAACACTCCTATCAGCATTGATGTAAGGCAGGTGTTGAAGATTCATCGGAAGCAGGTGTTAAAGGGATGTGAGATTGTTTTCAACTCTTATAGCCCTAATCTGTGGAAAATGGCAGAGGAGCTGGGAGCAACTTGTTCAACACAAGCGGATGCGCCATCAGTGACACATATGGTTGCAACAAATGCTCGAACGAAGAATGATCTTCTGGCACTGAAGAACAAGTTTCTGGTTTGCCCACAGTGGATTGAAGCTGCGAGTTACTTGTGGGAAAAGCAACCTGAACACAAGTCCTCCACCTTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

229

Amino Acids

26.26

Weight (kDa)

8.78

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004854)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17821 FvH4_4g17830
rosa_chinensis	RchiOBHm_Chr4g0421781 RchiOBHm_Chr4g0421791 RchiOBHm_Chr4g0421881 RchiOBHm_Chr4g0421951 RchiOBHm_Chr5g0075131 RchiOBHm_Chr7g0189971
rosa_laevigata	RLG00000007651 RLG00000019705 RLG00000036532
rosa_multiflora	Rmu_co8181706.1_g000001 Rmu_sc0011516.1_g000006 Rmu_sc0030271.1_g000001 Rmu_ssc0000217.1_g000008
rosa_roxburghii	Rroxscaffold_1G00006490 Rroxscaffold_5G00364040 Rroxscaffold_7G00156710
rosa_rugosa	Rorug07G0129200
rosa_samantha	Rh2BG403800 Rh4BG238000 Rh4BG238100 Rh4BG238300 Rh4CG250000 Rh4CG250100 Rh4DG234100 Rh5DG527800 Rh6AG087100 Rh6AG514900 Rh7AG106900 Rh7DG110100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	400, 424
Acc36I	ACCTGC	2 cut(s)	400, 424
Acc65I	GGTACC	1 cut(s)	284
AccB1I	GGYRCC	1 cut(s)	284
AccII	CGCG	3 cut(s)	97, 99, 147
AciI	CCGC	3 cut(s)	147, 255, 527
AclWI	GGATC	1 cut(s)	166
AcuI	CTGAAG	1 cut(s)	614
AfaI	GTAC	4 cut(s)	59, 239, 272, 286
AfiI	CCNNNNNNNGG	1 cut(s)	27
AflII	CTTAAG	1 cut(s)	356
AgsI	TTSAA	7 cut(s)	250, 338, 418, 463, 519, 629, 682
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	5 cut(s)	25, 75, 111, 502, 632
AluI	AGCT	5 cut(s)	25, 75, 111, 502, 632
AlwI	GGATC	1 cut(s)	166
AoxI	GGCC	1 cut(s)	29
ApeKI	GCWGC	1 cut(s)	632
ArsI	GACNNNNNNTTYG	2 cut(s)	115, 147
Asp700I	GAANNNNTTC	1 cut(s)	342
Asp718I	GGTACC	1 cut(s)	284
AspLEI	GCGC	3 cut(s)	99, 147, 535
AspS9I	GGNCC	2 cut(s)	315, 378
AsuHPI	GGTGA	2 cut(s)	10, 58
AvaII	GGWCC	2 cut(s)	315, 378
BanI	GGYRCC	1 cut(s)	284
BarI	GAAGNNNNNNTAC	2 cut(s)	230, 262
BbvCI	CCTCAGC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	619
BccI	CCATC	1 cut(s)	544
BceAI	ACGGC	1 cut(s)	16
BciT130I	CCWGG	1 cut(s)	117
BclI	TGATCA	1 cut(s)	103
BfrI	CTTAAG	1 cut(s)	356
BfuAI	ACCTGC	2 cut(s)	400, 424
BisI	GCNGC	1 cut(s)	633
BlsI	GCNGC	1 cut(s)	634
BmcAI	AGTACT	1 cut(s)	59
Bme1390I	CCNGG	1 cut(s)	117
Bme18I	GGWCC	2 cut(s)	315, 378
BmgT120I	GGNCC	2 cut(s)	315, 378
BmiI	GGNNCC	1 cut(s)	286
BmrFI	CCNGG	1 cut(s)	117
BmsI	GCATC	1 cut(s)	520
BpmI	CTGGAG	1 cut(s)	55
Bpu10I	CCTNAGC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	115
BsaXI	ACNNNNNCTCC	4 cut(s)	370, 400, 656, 686
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	115
BseGI	GGATG	2 cut(s)	452, 535
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMII	CTCAG	2 cut(s)	17, 297
BseRI	GAGGAG	1 cut(s)	512
BseXI	GCAGC	1 cut(s)	619
BseYI	CCCAGC	1 cut(s)	502
Bsh1236I	CGCG	3 cut(s)	97, 99, 147
BshFI	GGCC	1 cut(s)	31
BshNI	GGYRCC	1 cut(s)	284
BslI	CCNNNNNNNGG	1 cut(s)	27
BsnI	GGCC	1 cut(s)	31
Bsp143I	GATC	3 cut(s)	103, 171, 580
BspACI	CCGC	3 cut(s)	147, 255, 527
BspANI	GGCC	1 cut(s)	31
BspCNI	CTCAG	2 cut(s)	18, 298
BspFNI	CGCG	3 cut(s)	97, 99, 147
BspLI	GGNNCC	1 cut(s)	286
BspMI	ACCTGC	2 cut(s)	400, 424
BspPI	GGATC	1 cut(s)	166
BspT107I	GGYRCC	1 cut(s)	284
BspTI	CTTAAG	1 cut(s)	356
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	3 cut(s)	103, 171, 580
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	2 cut(s)	328, 621
BstAFI	CTTAAG	1 cut(s)	356
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstDEI	CTNAG	2 cut(s)	26, 306
BstF5I	GGATG	2 cut(s)	452, 535
BstFNI	CGCG	3 cut(s)	97, 99, 147
BstHHI	GCGC	3 cut(s)	99, 147, 535
BstKTI	GATC	3 cut(s)	106, 174, 583
BstMBI	GATC	3 cut(s)	103, 171, 580
BstMWI	GCNNNNNNNGC	1 cut(s)	563
BstNI	CCWGG	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	115
BstUI	CGCG	3 cut(s)	97, 99, 147
BstV1I	GCAGC	1 cut(s)	619
BsuRI	GGCC	1 cut(s)	31
BtgZI	GCGATG	2 cut(s)	78, 114
BtsCI	GGATG	2 cut(s)	452, 535
BtsIMutI	CAGTG	3 cut(s)	546, 590, 626
BveI	ACCTGC	2 cut(s)	400, 424
CfoI	GCGC	3 cut(s)	99, 147, 535
Cfr13I	GGNCC	2 cut(s)	315, 378
Csp6I	GTAC	4 cut(s)	58, 238, 271, 285
CviAII	CATG	2 cut(s)	302, 368
CviJI	RGCY	7 cut(s)	25, 31, 75, 111, 474, 502, 632
CviKI_1	RGCY	7 cut(s)	25, 31, 75, 111, 474, 502, 632
CviQI	GTAC	4 cut(s)	58, 238, 271, 285
DdeI	CTNAG	2 cut(s)	26, 306
DpnI	GATC	3 cut(s)	105, 173, 582
DpnII	GATC	3 cut(s)	103, 171, 580
Eco32I	GATATC	1 cut(s)	373
Eco47I	GGWCC	2 cut(s)	315, 378
Eco57I	CTGAAG	1 cut(s)	614
EcoRII	CCWGG	1 cut(s)	115
EcoRV	GATATC	1 cut(s)	373
FaeI	CATG	2 cut(s)	305, 371
FaiI	YATR	8 cut(s)	185, 196, 264, 303, 369, 471, 549, 551
FatI	CATG	2 cut(s)	301, 367
FauNDI	CATATG	1 cut(s)	549
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	1 cut(s)	633
FokI	GGATG	2 cut(s)	459, 542
Fsp4HI	GCNGC	1 cut(s)	633
GlaI	GCGC	3 cut(s)	98, 146, 534
GluI	GCNGC	1 cut(s)	633
GsaI	CCCAGC	1 cut(s)	506
GsuI	CTGGAG	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	31
HhaI	GCGC	3 cut(s)	99, 147, 535
Hin1II	CATG	2 cut(s)	305, 371
Hin6I	GCGC	3 cut(s)	97, 145, 533
HinP1I	GCGC	3 cut(s)	97, 145, 533
HinfI	GANTC	4 cut(s)	5, 15, 363, 421
HphI	GGTGA	2 cut(s)	10, 58
Hpy188I	TCNGA	1 cut(s)	429
Hpy188III	TCNNGA	4 cut(s)	169, 212, 335, 376
Hpy99I	CGWCG	1 cut(s)	182
HpyCH4III	ACNGT	2 cut(s)	328, 621
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	2 cut(s)	232, 557
HpyF10VI	GCNNNNNNNGC	1 cut(s)	563
HpyF3I	CTNAG	2 cut(s)	26, 306
HpySE526I	ACGT	1 cut(s)	192
Hsp92II	CATG	2 cut(s)	305, 371
HspAI	GCGC	3 cut(s)	97, 145, 533
KpnI	GGTACC	1 cut(s)	288
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	3 cut(s)	103, 171, 580
LmnI	GCTCC	4 cut(s)	80, 116, 499, 506
Lsp1109I	GCAGC	1 cut(s)	619
LweI	GCATC	1 cut(s)	520
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	2 cut(s)	541, 638
MalI	GATC	3 cut(s)	105, 173, 582
MboI	GATC	3 cut(s)	103, 171, 580
MboII	GAAGA	7 cut(s)	55, 238, 338, 430, 575, 586, 607
MluCI	AATT	3 cut(s)	217, 241, 682
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	6 cut(s)	21, 79, 185, 284, 490, 682
MroXI	GAANNNNTTC	1 cut(s)	342
MseI	TTAA	4 cut(s)	311, 357, 440, 685
MspCI	CTTAAG	1 cut(s)	356
MspR9I	CCNGG	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	117
MvnI	CGCG	3 cut(s)	97, 99, 147
MwoI	GCNNNNNNNGC	1 cut(s)	563
NdeI	CATATG	1 cut(s)	549
NdeII	GATC	3 cut(s)	103, 171, 580
NlaIII	CATG	2 cut(s)	305, 371
NlaIV	GGNNCC	1 cut(s)	286
NmuCI	GTSAC	1 cut(s)	541
PaqCI	CACCTGC	2 cut(s)	400, 424
PdmI	GAANNNNTTC	1 cut(s)	342
PfeI	GAWTC	4 cut(s)	5, 15, 363, 421
PkrI	GCNGC	1 cut(s)	634
Psp6I	CCWGG	1 cut(s)	115
PspFI	CCCAGC	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	1 cut(s)	286
PspPI	GGNCC	2 cut(s)	315, 378
RsaI	GTAC	4 cut(s)	59, 239, 272, 286
RsaNI	GTAC	4 cut(s)	58, 238, 271, 285
SaqAI	TTAA	4 cut(s)	311, 357, 440, 685
SatI	GCNGC	1 cut(s)	633
Sau3AI	GATC	3 cut(s)	103, 171, 580
Sau96I	GGNCC	2 cut(s)	315, 378
ScaI	AGTACT	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	117
SfaNI	GCATC	1 cut(s)	520
SinI	GGWCC	2 cut(s)	315, 378
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	3 cut(s)	217, 241, 682
SsiI	CCGC	3 cut(s)	147, 255, 527
StyD4I	CCNGG	1 cut(s)	115
TaaI	ACNGT	2 cut(s)	328, 621
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	2 cut(s)	177, 568
TaqII	GACCGA	1 cut(s)	332
TasI	AATT	3 cut(s)	217, 241, 682
TatI	WGTACW	2 cut(s)	57, 237
TfiI	GAWTC	4 cut(s)	5, 15, 363, 421
Tru1I	TTAA	4 cut(s)	311, 357, 440, 685
Tru9I	TTAA	4 cut(s)	311, 357, 440, 685
TscAI	CASTG	3 cut(s)	546, 597, 626
TseFI	GTSAC	1 cut(s)	541
TseI	GCWGC	1 cut(s)	632
Tsp45I	GTSAC	1 cut(s)	541
TspDTI	ATGAA	2 cut(s)	336, 413
TspRI	CASTG	3 cut(s)	546, 597, 626
Vha464I	CTTAAG	1 cut(s)	356
VpaK11BI	GGWCC	2 cut(s)	315, 378
XmnI	GAANNNNTTC	1 cut(s)	342
ZrmI	AGTACT	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.