Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000217.1

Orthogroup ID

OG0004854

Physical Location & Seq

Genomic Coordinates Forward (+)

24724 .. 25191

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000217.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgtgcctcaataaccgcaagtctcttgccgagttgaagacggatgaaaatgattatcttgaacatattcttcagcttcttaagcaagtccacgctatgctctttgttcataagctgcccaacaagaatcactttggaaatgatgtaaggcaggtgttaaagactcttcggaaacgagtgctgaaagggtgtgagatcgttttcgaccgtcatgatttaactagaatcaataatatttggaaaatggcggaggagttgggagcaatttgttcaactcgagtggatgcaccatctgtcacccatgtggttgcaacagatacccgaaccaagaattctcttctggcagtgaagaataagaagctgttggtccgccaagaatggattgaatctgcaagttacatgtgggagaagcaacctgaacacaagttccttgtcccaactacagaaacctacattaattgtgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

155

Amino Acids

18.11

Weight (kDa)

9.06

Isoelectric Point (pI)

49.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004854)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17821 FvH4_4g17830
rosa_chinensis	RchiOBHm_Chr4g0421781 RchiOBHm_Chr4g0421791 RchiOBHm_Chr4g0421881 RchiOBHm_Chr4g0421951 RchiOBHm_Chr5g0075131 RchiOBHm_Chr7g0189971
rosa_laevigata	RLG00000007651 RLG00000019705 RLG00000036532
rosa_multiflora	Rmu_co8181706.1_g000001 Rmu_sc0011516.1_g000006 Rmu_sc0030271.1_g000001 Rmu_ssc0000217.1_g000008
rosa_roxburghii	Rroxscaffold_1G00006490 Rroxscaffold_5G00364040 Rroxscaffold_7G00156710
rosa_rugosa	Rorug07G0129200
rosa_samantha	Rh2BG403800 Rh4BG238000 Rh4BG238100 Rh4BG238300 Rh4CG250000 Rh4CG250100 Rh4DG234100 Rh5DG527800 Rh6AG087100 Rh6AG514900 Rh7AG106900 Rh7DG110100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	142
Acc36I	ACCTGC	1 cut(s)	142
AciI	CCGC	3 cut(s)	16, 248, 370
AcsI	RAATTY	1 cut(s)	331
AcuI	CTGAAG	1 cut(s)	56
AflII	CTTAAG	1 cut(s)	80
AflIII	ACRYGT	1 cut(s)	399
AgsI	TTSAA	4 cut(s)	37, 62, 273, 386
AleI	CACNNNNGTG	1 cut(s)	302
AloI	GAACNNNNNNTCC	2 cut(s)	411, 443
AluBI	AGCT	3 cut(s)	76, 115, 361
AluI	AGCT	3 cut(s)	76, 115, 361
Alw26I	GTCTC	1 cut(s)	27
Ama87I	CYCGRG	1 cut(s)	276
ApeKI	GCWGC	1 cut(s)	115
ApoI	RAATTY	1 cut(s)	331
AseI	ATTAAT	1 cut(s)	456
Asp700I	GAANNNNTTC	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	367
AsuHPI	GGTGA	1 cut(s)	289
AvaI	CYCGRG	1 cut(s)	276
AvaII	GGWCC	1 cut(s)	367
BbsI	GAAGAC	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	102
BccI	CCATC	1 cut(s)	298
BcoDI	GTCTC	1 cut(s)	27
BfaI	CTAG	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	441
BfrI	CTTAAG	1 cut(s)	80
BfuAI	ACCTGC	1 cut(s)	142
BisI	GCNGC	1 cut(s)	116
BlsI	GCNGC	1 cut(s)	117
Bme18I	GGWCC	1 cut(s)	367
BmeT110I	CYCGRG	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	367
BmsI	GCATC	1 cut(s)	274
BpiI	GAAGAC	1 cut(s)	44
BseGI	GGATG	2 cut(s)	49, 289
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	1 cut(s)	102
Bsh1285I	CGRYCG	1 cut(s)	208
BsiEI	CGRYCG	1 cut(s)	208
BsiHKCI	CYCGRG	1 cut(s)	276
BslFI	GGGAC	1 cut(s)	419
BsmAI	GTCTC	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	419
BsoBI	CYCGRG	1 cut(s)	276
Bsp143I	GATC	1 cut(s)	195
BspACI	CCGC	3 cut(s)	16, 248, 370
BspHI	TCATGA	1 cut(s)	211
BspMI	ACCTGC	1 cut(s)	142
BspTI	CTTAAG	1 cut(s)	80
BssMI	GATC	1 cut(s)	195
Bst4CI	ACNGT	1 cut(s)	209
Bst6I	CTCTTC	2 cut(s)	171, 342
BstAFI	CTTAAG	1 cut(s)	80
BstF5I	GGATG	2 cut(s)	49, 289
BstKTI	GATC	1 cut(s)	198
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	195
BstMCI	CGRYCG	1 cut(s)	208
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstNSI	RCATGY	1 cut(s)	403
BstSFI	CTRYAG	1 cut(s)	441
BstV1I	GCAGC	1 cut(s)	102
BstV2I	GAAGAC	1 cut(s)	44
BtsCI	GGATG	2 cut(s)	49, 289
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	1 cut(s)	351
BveI	ACCTGC	1 cut(s)	142
CciI	TCATGA	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	367
CspCI	CAANNNNNGTGG	2 cut(s)	261, 296
CviAII	CATG	3 cut(s)	212, 302, 400
CviJI	RGCY	3 cut(s)	76, 115, 361
CviKI_1	RGCY	3 cut(s)	76, 115, 361
DpnI	GATC	1 cut(s)	197
DpnII	GATC	1 cut(s)	195
Eam1104I	CTCTTC	2 cut(s)	171, 342
EarI	CTCTTC	2 cut(s)	171, 342
EciI	GGCGGA	2 cut(s)	263, 359
Eco47I	GGWCC	1 cut(s)	367
Eco57I	CTGAAG	1 cut(s)	56
Eco88I	CYCGRG	1 cut(s)	276
EcoRI	GAATTC	1 cut(s)	331
FaeI	CATG	3 cut(s)	215, 305, 403
FaiI	YATR	6 cut(s)	66, 98, 111, 213, 303, 401
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	3 cut(s)	211, 301, 399
Fnu4HI	GCNGC	1 cut(s)	116
FokI	GGATG	2 cut(s)	56, 296
Fsp4HI	GCNGC	1 cut(s)	116
FspBI	CTAG	1 cut(s)	222
GluI	GCNGC	1 cut(s)	116
Hin1II	CATG	3 cut(s)	215, 305, 403
HinfI	GANTC	4 cut(s)	127, 163, 225, 386
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	2 cut(s)	59, 212
Hpy8I	GTNNAC	1 cut(s)	91
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4V	TGCA	3 cut(s)	287, 311, 392
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
Hsp92II	CATG	3 cut(s)	215, 305, 403
Kzo9I	GATC	1 cut(s)	195
LmnI	GCTCC	1 cut(s)	260
LpnPI	CCDG	3 cut(s)	137, 326, 429
Lsp1109I	GCAGC	1 cut(s)	102
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	1 cut(s)	222
MaeIII	GTNAC	3 cut(s)	295, 395, 461
MalI	GATC	1 cut(s)	197
MboI	GATC	1 cut(s)	195
MboII	GAAGA	5 cut(s)	49, 62, 158, 329, 361
MluCI	AATT	3 cut(s)	264, 331, 457
MlyI	GAGTC	1 cut(s)	157
MnlI	CCTC	2 cut(s)	17, 244
MroXI	GAANNNNTTC	1 cut(s)	66
MseI	TTAA	4 cut(s)	81, 158, 218, 456
MslI	CAYNNNNRTG	1 cut(s)	302
MspCI	CTTAAG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	82
NdeII	GATC	1 cut(s)	195
NlaIII	CATG	3 cut(s)	215, 305, 403
NmeAIII	GCCGAG	1 cut(s)	55
NmuCI	GTSAC	2 cut(s)	295, 461
NspI	RCATGY	1 cut(s)	403
OliI	CACNNNNGTG	1 cut(s)	302
PaeR7I	CTCGAG	1 cut(s)	276
PagI	TCATGA	1 cut(s)	211
PaqCI	CACCTGC	1 cut(s)	142
PciI	ACATGT	1 cut(s)	399
PdmI	GAANNNNTTC	1 cut(s)	66
PfeI	GAWTC	3 cut(s)	127, 225, 386
PkrI	GCNGC	1 cut(s)	117
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PscI	ACATGT	1 cut(s)	399
PshBI	ATTAAT	1 cut(s)	456
PspPI	GGNCC	1 cut(s)	367
PspXI	VCTCGAGB	1 cut(s)	276
RseI	CAYNNNNRTG	1 cut(s)	302
SaqAI	TTAA	4 cut(s)	81, 158, 218, 456
SatI	GCNGC	1 cut(s)	116
Sau3AI	GATC	1 cut(s)	195
Sau96I	GGNCC	1 cut(s)	367
SchI	GAGTC	1 cut(s)	157
SetI	ASST	6 cut(s)	78, 117, 156, 363, 418, 452
SfaNI	GCATC	1 cut(s)	274
SfcI	CTRYAG	1 cut(s)	441
Sfr274I	CTCGAG	1 cut(s)	276
SinI	GGWCC	1 cut(s)	367
SlaI	CTCGAG	1 cut(s)	276
SmiMI	CAYNNNNRTG	1 cut(s)	302
SmlI	CTYRAG	2 cut(s)	80, 276
SmoI	CTYRAG	2 cut(s)	80, 276
Sse9I	AATT	3 cut(s)	264, 331, 457
SsiI	CCGC	3 cut(s)	16, 248, 370
SspI	AATATT	1 cut(s)	235
SspMI	CTAG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	209
TaqI	TCGA	2 cut(s)	204, 277
TasI	AATT	3 cut(s)	264, 331, 457
TfiI	GAWTC	3 cut(s)	127, 225, 386
Tru1I	TTAA	4 cut(s)	81, 158, 218, 456
Tru9I	TTAA	4 cut(s)	81, 158, 218, 456
TscAI	CASTG	1 cut(s)	351
TseFI	GTSAC	2 cut(s)	295, 461
TseI	GCWGC	1 cut(s)	115
Tsp45I	GTSAC	2 cut(s)	295, 461
TspDTI	ATGAA	2 cut(s)	60, 98
TspGWI	ACGGA	1 cut(s)	56
TspRI	CASTG	1 cut(s)	351
Vha464I	CTTAAG	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	367
VspI	ATTAAT	1 cut(s)	456
XapI	RAATTY	1 cut(s)	331
XceI	RCATGY	1 cut(s)	403
XhoI	CTCGAG	1 cut(s)	276
XmnI	GAANNNNTTC	1 cut(s)	66
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.