RNA polymerase II C-terminal domain phosphatase-like
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g17821 FvH4_4g17830 |
| rosa_chinensis | RchiOBHm_Chr4g0421781 RchiOBHm_Chr4g0421791 RchiOBHm_Chr4g0421881 RchiOBHm_Chr4g0421951 RchiOBHm_Chr5g0075131 RchiOBHm_Chr7g0189971 |
| rosa_laevigata | RLG00000007651 RLG00000019705 RLG00000036532 |
| rosa_multiflora | Rmu_co8181706.1_g000001 Rmu_sc0011516.1_g000006 Rmu_sc0030271.1_g000001 Rmu_ssc0000217.1_g000008 |
| rosa_roxburghii | Rroxscaffold_1G00006490 Rroxscaffold_5G00364040 Rroxscaffold_7G00156710 |
| rosa_rugosa | Rorug07G0129200 |
| rosa_samantha | Rh2BG403800 Rh4BG238000 Rh4BG238100 Rh4BG238300 Rh4CG250000 Rh4CG250100 Rh4DG234100 Rh5DG527800 Rh6AG087100 Rh6AG514900 Rh7AG106900 Rh7DG110100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 265 |
| AcsI | RAATTY | 1 cut(s) | 223 |
| AcuI | CTGAAG | 1 cut(s) | 56 |
| AflII | CTTAAG | 1 cut(s) | 80 |
| AgsI | TTSAA | 3 cut(s) | 37, 165, 281 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 242, 274 |
| AleI | CACNNNNGTG | 1 cut(s) | 194 |
| AluBI | AGCT | 3 cut(s) | 76, 115, 284 |
| AluI | AGCT | 3 cut(s) | 76, 115, 284 |
| Alw26I | GTCTC | 2 cut(s) | 27, 334 |
| Ama87I | CYCGRG | 1 cut(s) | 168 |
| ApeKI | GCWGC | 1 cut(s) | 284 |
| ApoI | RAATTY | 1 cut(s) | 223 |
| AspS9I | GGNCC | 1 cut(s) | 262 |
| AsuHPI | GGTGA | 1 cut(s) | 181 |
| AvaI | CYCGRG | 1 cut(s) | 168 |
| AvaII | GGWCC | 1 cut(s) | 262 |
| BbsI | GAAGAC | 1 cut(s) | 44 |
| BbvI | GCAGC | 1 cut(s) | 271 |
| BccI | CCATC | 1 cut(s) | 190 |
| BceAI | ACGGC | 1 cut(s) | 249 |
| BcoDI | GTCTC | 2 cut(s) | 27, 334 |
| BfrI | CTTAAG | 1 cut(s) | 80 |
| BisI | GCNGC | 1 cut(s) | 285 |
| BlsI | GCNGC | 1 cut(s) | 286 |
| Bme18I | GGWCC | 1 cut(s) | 262 |
| BmeT110I | CYCGRG | 1 cut(s) | 168 |
| BmgT120I | GGNCC | 1 cut(s) | 262 |
| BmsI | GCATC | 1 cut(s) | 166 |
| BpiI | GAAGAC | 1 cut(s) | 44 |
| BpuEI | CTTGAG | 1 cut(s) | 80 |
| BseGI | GGATG | 2 cut(s) | 49, 181 |
| BseXI | GCAGC | 1 cut(s) | 271 |
| BsiHKCI | CYCGRG | 1 cut(s) | 168 |
| BsmAI | GTCTC | 2 cut(s) | 27, 334 |
| BsoBI | CYCGRG | 1 cut(s) | 168 |
| BspACI | CCGC | 1 cut(s) | 265 |
| BspTI | CTTAAG | 1 cut(s) | 80 |
| Bst4CI | ACNGT | 1 cut(s) | 56 |
| BstAFI | CTTAAG | 1 cut(s) | 80 |
| BstDEI | CTNAG | 1 cut(s) | 325 |
| BstF5I | GGATG | 2 cut(s) | 49, 181 |
| BstMAI | GTCTC | 2 cut(s) | 27, 334 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 82 |
| BstV1I | GCAGC | 1 cut(s) | 271 |
| BstV2I | GAAGAC | 1 cut(s) | 44 |
| BtsCI | GGATG | 2 cut(s) | 49, 181 |
| BtsI | GCAGTG | 1 cut(s) | 243 |
| BtsIMutI | CAGTG | 1 cut(s) | 243 |
| Cfr13I | GGNCC | 1 cut(s) | 262 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 153, 188 |
| CviAII | CATG | 1 cut(s) | 194 |
| CviJI | RGCY | 4 cut(s) | 76, 115, 284, 307 |
| CviKI_1 | RGCY | 4 cut(s) | 76, 115, 284, 307 |
| DdeI | CTNAG | 1 cut(s) | 325 |
| EciI | GGCGGA | 1 cut(s) | 254 |
| Eco47I | GGWCC | 1 cut(s) | 262 |
| Eco57I | CTGAAG | 1 cut(s) | 56 |
| Eco88I | CYCGRG | 1 cut(s) | 168 |
| EcoRI | GAATTC | 1 cut(s) | 223 |
| FaeI | CATG | 1 cut(s) | 197 |
| FaiI | YATR | 7 cut(s) | 98, 111, 195, 294, 296, 298, 340 |
| FatI | CATG | 1 cut(s) | 193 |
| Fnu4HI | GCNGC | 1 cut(s) | 285 |
| FokI | GGATG | 2 cut(s) | 56, 188 |
| Fsp4HI | GCNGC | 1 cut(s) | 285 |
| GluI | GCNGC | 1 cut(s) | 285 |
| Hin1II | CATG | 1 cut(s) | 197 |
| HinfI | GANTC | 1 cut(s) | 127 |
| HphI | GGTGA | 1 cut(s) | 181 |
| Hpy166II | GTNNAC | 1 cut(s) | 91 |
| Hpy188III | TCNNGA | 1 cut(s) | 59 |
| Hpy8I | GTNNAC | 1 cut(s) | 91 |
| HpyCH4III | ACNGT | 1 cut(s) | 56 |
| HpyCH4V | TGCA | 2 cut(s) | 179, 287 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 82 |
| HpyF3I | CTNAG | 1 cut(s) | 325 |
| Hsp92II | CATG | 1 cut(s) | 197 |
| LmnI | GCTCC | 1 cut(s) | 152 |
| LpnPI | CCDG | 1 cut(s) | 324 |
| Lsp1109I | GCAGC | 1 cut(s) | 271 |
| LweI | GCATC | 1 cut(s) | 166 |
| MaeIII | GTNAC | 1 cut(s) | 187 |
| MboII | GAAGA | 4 cut(s) | 49, 62, 232, 253 |
| MluCI | AATT | 2 cut(s) | 49, 223 |
| MnlI | CCTC | 1 cut(s) | 17 |
| MseI | TTAA | 1 cut(s) | 81 |
| MslI | CAYNNNNRTG | 1 cut(s) | 194 |
| MspCI | CTTAAG | 1 cut(s) | 80 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 82 |
| NlaIII | CATG | 1 cut(s) | 197 |
| NmeAIII | GCCGAG | 2 cut(s) | 55, 293 |
| NmuCI | GTSAC | 1 cut(s) | 187 |
| OliI | CACNNNNGTG | 1 cut(s) | 194 |
| PaeR7I | CTCGAG | 1 cut(s) | 168 |
| PfeI | GAWTC | 1 cut(s) | 127 |
| PkrI | GCNGC | 1 cut(s) | 286 |
| PspPI | GGNCC | 1 cut(s) | 262 |
| PspXI | VCTCGAGB | 1 cut(s) | 168 |
| RseI | CAYNNNNRTG | 1 cut(s) | 194 |
| SaqAI | TTAA | 1 cut(s) | 81 |
| SatI | GCNGC | 1 cut(s) | 285 |
| Sau96I | GGNCC | 1 cut(s) | 262 |
| SetI | ASST | 4 cut(s) | 78, 117, 286, 313 |
| SfaNI | GCATC | 1 cut(s) | 166 |
| Sfr274I | CTCGAG | 1 cut(s) | 168 |
| SinI | GGWCC | 1 cut(s) | 262 |
| SlaI | CTCGAG | 1 cut(s) | 168 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 194 |
| SmlI | CTYRAG | 3 cut(s) | 59, 80, 168 |
| SmoI | CTYRAG | 3 cut(s) | 59, 80, 168 |
| Sse9I | AATT | 2 cut(s) | 49, 223 |
| SsiI | CCGC | 1 cut(s) | 265 |
| TaaI | ACNGT | 1 cut(s) | 56 |
| TaqI | TCGA | 2 cut(s) | 169, 214 |
| TasI | AATT | 2 cut(s) | 49, 223 |
| TfiI | GAWTC | 1 cut(s) | 127 |
| Tru1I | TTAA | 1 cut(s) | 81 |
| Tru9I | TTAA | 1 cut(s) | 81 |
| TscAI | CASTG | 1 cut(s) | 243 |
| TseFI | GTSAC | 1 cut(s) | 187 |
| TseI | GCWGC | 1 cut(s) | 284 |
| Tsp45I | GTSAC | 1 cut(s) | 187 |
| TspDTI | ATGAA | 1 cut(s) | 98 |
| TspGWI | ACGGA | 1 cut(s) | 56 |
| TspRI | CASTG | 1 cut(s) | 243 |
| Vha464I | CTTAAG | 1 cut(s) | 80 |
| VpaK11BI | GGWCC | 1 cut(s) | 262 |
| XapI | RAATTY | 1 cut(s) | 223 |
| XhoI | CTCGAG | 1 cut(s) | 168 |