Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004854

Physical Location & Seq

Genomic Coordinates Forward (+)

80956266 .. 80957480

Gene Structure 1215 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34988

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGTCACGGAGTACAAAGTCCAGGAAGATTAGGAATAGTTCTCCTTATATATCAAACAGGCTGCAATTCTCTTTTTTGATTAACTGTCAAAATTTCTTTAAGAATCTTCATCTCGAATTCACAATGAAGCAAGCGGACGATCGCATTTCTTCGAATCTTCATAGAGCACTGAACTTGAATTCCAAGTCTTGTTCGTCTCAAAACAGGAAACTACACTTGGTACTTGATCTAGATCACACACTACTGCATTCCACCGAACTCGATCATGTGACTCCCCAAGAAGAATACTTGAAGACCAAAACAGATGATCATTCTCTGGAAGGTGATGTTTTCATGGATTCAGCCATGATAACCAAGTTGAGGCCCTTTGTCAGGACATTTCTCAAGGAAGCCAGTCACATGTTTGAGATGCACATATACACAACAGGCAATCGAGCTTATGCATTGCGAATGGCTGAGTTGCTTGACCCCGAACAAGAGTACTTCTTCACTTCTAGCTCTAGAGTAATATCGTGCAACGACCACAGCTCCCGAGGACAAAAGAAGTGTCTAGATCTTGTGCGTGGTTGTGAAGATTCTAATGTCTTGATCCTAGACGATACACGAGAGGCATGGACAAAGGAAAATCAGGACAATTTGATAGTAATAAGACGATATTATTTCTTCAAATACAGTTCTCAAACAATGTGCTTCAATAACCGCAAGTCTCTTGCCGAGTTGAAGACGGATGAAAATGATTATCTTGAACATATTCTTCAGCTTCTTAAGCAAGTCCACTCTATGTTCTTTGTTCATAAGCTGCCCAACAAGAATCACTTTGGAAATGATGTAAGGCAGGTGTTAAAGACTCTTCGGAAAAGGGAGTTGGGAGCAATTTGTTCAACTCGAGTGGATGCACCATCTGTCACCCATGTGGTTGCAACAAATACCCGAACCAAGAATTCTCTTCTGGCAGTGAAGAATAAGAAGCTGTTGGTCCGCCAAGAATGGATTGAATCTGCAAGTTACATGTGGGAGAAGCAACCTGAACACAAGTTCCTTGTCCCAACTACAGAAACCTACATTAATTGTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

358

Amino Acids

41.97

Weight (kDa)

8.96

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	72 - 220	3.2e-24	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004854)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17821 FvH4_4g17830
rosa_chinensis	RchiOBHm_Chr4g0421781 RchiOBHm_Chr4g0421791 RchiOBHm_Chr4g0421881 RchiOBHm_Chr4g0421951 RchiOBHm_Chr5g0075131 RchiOBHm_Chr7g0189971
rosa_laevigata	RLG00000007651 RLG00000019705 RLG00000036532
rosa_multiflora	Rmu_co8181706.1_g000001 Rmu_sc0011516.1_g000006 Rmu_sc0030271.1_g000001 Rmu_ssc0000217.1_g000008
rosa_roxburghii	Rroxscaffold_1G00006490 Rroxscaffold_5G00364040 Rroxscaffold_7G00156710
rosa_rugosa	Rorug07G0129200
rosa_samantha	Rh2BG403800 Rh4BG238000 Rh4BG238100 Rh4BG238300 Rh4CG250000 Rh4CG250100 Rh4DG234100 Rh5DG527800 Rh6AG087100 Rh6AG514900 Rh7AG106900 Rh7DG110100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	826
Acc36I	ACCTGC	1 cut(s)	826
AciI	CCGC	3 cut(s)	134, 700, 979
AclWI	GGATC	1 cut(s)	583
AcsI	RAATTY	4 cut(s)	91, 116, 178, 940
AcuI	CTGAAG	1 cut(s)	740
AfaI	GTAC	3 cut(s)	13, 222, 482
AfiI	CCNNNNNNNGG	2 cut(s)	360, 372
AflII	CTTAAG	1 cut(s)	764
AflIII	ACRYGT	2 cut(s)	399, 1008
AgsI	TTSAA	8 cut(s)	178, 292, 667, 694, 721, 746, 882, 995
AjnI	CCWGG	1 cut(s)	20
AjuI	GAANNNNNNNTTGG	4 cut(s)	200, 232, 848, 880
AleI	CACNNNNGTG	1 cut(s)	911
AloI	GAACNNNNNNTCC	4 cut(s)	164, 196, 1020, 1052
AluBI	AGCT	6 cut(s)	437, 498, 528, 760, 799, 970
AluI	AGCT	6 cut(s)	437, 498, 528, 760, 799, 970
Alw21I	GWGCWC	1 cut(s)	169
Alw26I	GTCTC	2 cut(s)	201, 711
AlwI	GGATC	1 cut(s)	583
Ama87I	CYCGRG	2 cut(s)	531, 885
AoxI	GGCC	1 cut(s)	362
ApeKI	GCWGC	2 cut(s)	61, 799
ApoI	RAATTY	4 cut(s)	91, 116, 178, 940
ArsI	GACNNNNNNTTYG	2 cut(s)	532, 564
AseI	ATTAAT	1 cut(s)	1065
Asp700I	GAANNNNTTC	1 cut(s)	750
AspS9I	GGNCC	2 cut(s)	363, 976
AsuHPI	GGTGA	2 cut(s)	335, 898
AsuII	TTCGAA	1 cut(s)	152
AvaI	CYCGRG	2 cut(s)	531, 885
AvaII	GGWCC	1 cut(s)	976
BauI	CACGAG	1 cut(s)	603
BbsI	GAAGAC	2 cut(s)	299, 728
Bbv12I	GWGCWC	1 cut(s)	169
BbvI	GCAGC	2 cut(s)	48, 786
BccI	CCATC	1 cut(s)	907
BciT130I	CCWGG	1 cut(s)	22
BclI	TGATCA	1 cut(s)	307
BcoDI	GTCTC	2 cut(s)	201, 711
BfaI	CTAG	5 cut(s)	230, 495, 501, 551, 593
BfmI	CTRYAG	1 cut(s)	1050
BfrI	CTTAAG	1 cut(s)	764
BfuAI	ACCTGC	1 cut(s)	826
BglII	AGATCT	1 cut(s)	553
BisI	GCNGC	2 cut(s)	62, 800
BlsI	GCNGC	2 cut(s)	63, 801
BmcAI	AGTACT	1 cut(s)	482
Bme1390I	CCNGG	1 cut(s)	22
Bme18I	GGWCC	1 cut(s)	976
BmeT110I	CYCGRG	2 cut(s)	531, 885
BmgT120I	GGNCC	2 cut(s)	363, 976
BmrFI	CCNGG	1 cut(s)	22
BmsI	GCATC	2 cut(s)	399, 883
BpiI	GAAGAC	2 cut(s)	299, 728
Bpu14I	TTCGAA	1 cut(s)	152
BpuEI	CTTGAG	1 cut(s)	368
BsaBI	GATNNNNATC	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	532
BsaXI	ACNNNNNCTCC	2 cut(s)	512, 542
Bsc4I	CCNNNNNNNGG	2 cut(s)	360, 372
Bse1I	ACTGG	1 cut(s)	393
Bse3DI	GCAATG	1 cut(s)	443
Bse8I	GATNNNNATC	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	22
BseDI	CCNNGG	1 cut(s)	532
BseGI	GGATG	2 cut(s)	733, 898
BseJI	GATNNNNATC	1 cut(s)	231
BseLI	CCNNNNNNNGG	2 cut(s)	360, 372
BseMI	GCAATG	1 cut(s)	443
BseMII	CTCAG	1 cut(s)	447
BseNI	ACTGG	1 cut(s)	393
BseXI	GCAGC	2 cut(s)	48, 786
Bsh1285I	CGRYCG	1 cut(s)	142
BshFI	GGCC	1 cut(s)	364
BsiEI	CGRYCG	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	169
BsiHKCI	CYCGRG	2 cut(s)	531, 885
BslFI	GGGAC	1 cut(s)	1028
BslI	CCNNNNNNNGG	2 cut(s)	360, 372
BsmAI	GTCTC	2 cut(s)	201, 711
BsmBI	CGTCTC	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	1028
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	364
BsoBI	CYCGRG	2 cut(s)	531, 885
Bsp119I	TTCGAA	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	7 cut(s)	139, 226, 232, 262, 307, 553, 588
BspACI	CCGC	3 cut(s)	134, 700, 979
BspANI	GGCC	1 cut(s)	364
BspCNI	CTCAG	1 cut(s)	448
BspMI	ACCTGC	1 cut(s)	826
BspPI	GGATC	1 cut(s)	583
BspT104I	TTCGAA	1 cut(s)	152
BspTI	CTTAAG	1 cut(s)	764
BsrDI	GCAATG	1 cut(s)	443
BsrI	ACTGG	1 cut(s)	393
BssECI	CCNNGG	1 cut(s)	532
BssMI	GATC	7 cut(s)	139, 226, 232, 262, 307, 553, 588
BssSI	CACGAG	1 cut(s)	603
Bst2BI	CACGAG	1 cut(s)	603
Bst2UI	CCWGG	1 cut(s)	22
Bst4CI	ACNGT	2 cut(s)	86, 674
Bst6I	CTCTTC	2 cut(s)	855, 951
BstAFI	CTTAAG	1 cut(s)	764
BstBI	TTCGAA	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	1 cut(s)	456
BstENI	CCTNNNNNAGG	1 cut(s)	370
BstF5I	GGATG	2 cut(s)	733, 898
BstKTI	GATC	7 cut(s)	142, 229, 235, 265, 310, 556, 591
BstMAI	GTCTC	2 cut(s)	201, 711
BstMBI	GATC	7 cut(s)	139, 226, 232, 262, 307, 553, 588
BstMCI	CGRYCG	1 cut(s)	142
BstMWI	GCNNNNNNNGC	1 cut(s)	766
BstNI	CCWGG	1 cut(s)	22
BstNSI	RCATGY	2 cut(s)	403, 1012
BstSCI	CCNGG	1 cut(s)	20
BstSFI	CTRYAG	1 cut(s)	1050
BstV1I	GCAGC	2 cut(s)	48, 786
BstV2I	GAAGAC	2 cut(s)	299, 728
BstX2I	RGATCY	1 cut(s)	553
BstYI	RGATCY	1 cut(s)	553
BsuRI	GGCC	1 cut(s)	364
BtsCI	GGATG	2 cut(s)	733, 898
BtsI	GCAGTG	1 cut(s)	960
BtsIMutI	CAGTG	2 cut(s)	167, 960
BveI	ACCTGC	1 cut(s)	826
Cac8I	GCNNGC	1 cut(s)	132
Cfr13I	GGNCC	2 cut(s)	363, 976
Csp6I	GTAC	3 cut(s)	12, 221, 481
CspCI	CAANNNNNGTGG	2 cut(s)	870, 905
CviAII	CATG	7 cut(s)	266, 334, 346, 400, 612, 911, 1009
CviQI	GTAC	3 cut(s)	12, 221, 481
DdeI	CTNAG	1 cut(s)	456
DpnI	GATC	7 cut(s)	141, 228, 234, 264, 309, 555, 590
DpnII	GATC	7 cut(s)	139, 226, 232, 262, 307, 553, 588
Eam1104I	CTCTTC	2 cut(s)	855, 951
EarI	CTCTTC	2 cut(s)	855, 951
EciI	GGCGGA	1 cut(s)	968
Eco47I	GGWCC	1 cut(s)	976
Eco57I	CTGAAG	1 cut(s)	740
Eco88I	CYCGRG	2 cut(s)	531, 885
EcoNI	CCTNNNNNAGG	1 cut(s)	370
EcoO109I	RGGNCCY	1 cut(s)	363
EcoRI	GAATTC	3 cut(s)	116, 178, 940
EcoRII	CCWGG	1 cut(s)	20
EcoT22I	ATGCAT	1 cut(s)	445
Esp3I	CGTCTC	1 cut(s)	201
FaeI	CATG	7 cut(s)	269, 337, 349, 403, 615, 914, 1012
FalI	AAGNNNNNCTT	2 cut(s)	800, 832
FaqI	GGGAC	1 cut(s)	1028
FatI	CATG	7 cut(s)	265, 333, 345, 399, 611, 910, 1008
FbaI	TGATCA	1 cut(s)	307
Fnu4HI	GCNGC	2 cut(s)	62, 800
FokI	GGATG	2 cut(s)	740, 905
Fsp4HI	GCNGC	2 cut(s)	62, 800
FspBI	CTAG	5 cut(s)	230, 495, 501, 551, 593
GluI	GCNGC	2 cut(s)	62, 800
HaeIII	GGCC	1 cut(s)	364
Hin1II	CATG	7 cut(s)	269, 337, 349, 403, 615, 914, 1012
HinfI	GANTC	8 cut(s)	103, 154, 271, 338, 575, 811, 847, 995
HphI	GGTGA	2 cut(s)	335, 898
Hpy166II	GTNNAC	1 cut(s)	775
Hpy188I	TCNGA	1 cut(s)	855
Hpy8I	GTNNAC	1 cut(s)	775
HpyAV	CCTTC	1 cut(s)	314
HpyCH4III	ACNGT	2 cut(s)	86, 674
HpyCH4V	TGCA	8 cut(s)	64, 247, 412, 443, 516, 896, 920, 1001
HpyF10VI	GCNNNNNNNGC	1 cut(s)	766
HpyF3I	CTNAG	1 cut(s)	456
Hsp92II	CATG	7 cut(s)	269, 337, 349, 403, 615, 914, 1012
Ksp22I	TGATCA	1 cut(s)	307
Kzo9I	GATC	7 cut(s)	139, 226, 232, 262, 307, 553, 588
LmnI	GCTCC	2 cut(s)	533, 869
Lsp1109I	GCAGC	2 cut(s)	48, 786
LweI	GCATC	2 cut(s)	399, 883
MaeI	CTAG	5 cut(s)	230, 495, 501, 551, 593
MaeIII	GTNAC	6 cut(s)	3, 268, 395, 904, 1004, 1070
MalI	GATC	7 cut(s)	141, 228, 234, 264, 309, 555, 590
MboI	GATC	7 cut(s)	139, 226, 232, 262, 307, 553, 588
MflI	RGATCY	1 cut(s)	553
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	8 cut(s)	65, 91, 116, 178, 634, 873, 940, 1066
MlyI	GAGTC	2 cut(s)	265, 841
MnlI	CCTC	3 cut(s)	354, 527, 601
Mph1103I	ATGCAT	1 cut(s)	445
MroXI	GAANNNNTTC	1 cut(s)	750
MseI	TTAA	5 cut(s)	81, 99, 765, 842, 1065
MslI	CAYNNNNRTG	1 cut(s)	911
MspCI	CTTAAG	1 cut(s)	764
MspR9I	CCNGG	1 cut(s)	22
Mva1269I	GAATGC	1 cut(s)	247
MvaI	CCWGG	1 cut(s)	22
MwoI	GCNNNNNNNGC	1 cut(s)	766
NdeII	GATC	7 cut(s)	139, 226, 232, 262, 307, 553, 588
NlaIII	CATG	7 cut(s)	269, 337, 349, 403, 615, 914, 1012
NmeAIII	GCCGAG	1 cut(s)	739
NmuCI	GTSAC	5 cut(s)	3, 268, 395, 904, 1070
NsiI	ATGCAT	1 cut(s)	445
NspI	RCATGY	2 cut(s)	403, 1012
NspV	TTCGAA	1 cut(s)	152
OliI	CACNNNNGTG	1 cut(s)	911
PaeR7I	CTCGAG	1 cut(s)	885
PaqCI	CACCTGC	1 cut(s)	826
PciI	ACATGT	2 cut(s)	399, 1008
PctI	GAATGC	1 cut(s)	247
PdmI	GAANNNNTTC	1 cut(s)	750
PfeI	GAWTC	6 cut(s)	103, 154, 338, 575, 811, 995
PfoI	TCCNGGA	1 cut(s)	20
PkrI	GCNGC	2 cut(s)	63, 801
Ple19I	CGATCG	1 cut(s)	142
PleI	GAGTC	2 cut(s)	265, 841
PpsI	GAGTC	2 cut(s)	265, 841
PscI	ACATGT	2 cut(s)	399, 1008
PshBI	ATTAAT	1 cut(s)	1065
Psp6I	CCWGG	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	20
PspPI	GGNCC	2 cut(s)	363, 976
PspXI	VCTCGAGB	1 cut(s)	885
PsuI	RGATCY	1 cut(s)	553
PvuI	CGATCG	1 cut(s)	142
RsaI	GTAC	3 cut(s)	13, 222, 482
RsaNI	GTAC	3 cut(s)	12, 221, 481
RseI	CAYNNNNRTG	1 cut(s)	911
SaqAI	TTAA	5 cut(s)	81, 99, 765, 842, 1065
SatI	GCNGC	2 cut(s)	62, 800
Sau3AI	GATC	7 cut(s)	139, 226, 232, 262, 307, 553, 588
Sau96I	GGNCC	2 cut(s)	363, 976
ScaI	AGTACT	1 cut(s)	482
SchI	GAGTC	2 cut(s)	265, 841
ScrFI	CCNGG	1 cut(s)	22
SduI	GDGCHC	1 cut(s)	169
SfaNI	GCATC	2 cut(s)	399, 883
SfcI	CTRYAG	1 cut(s)	1050
Sfr274I	CTCGAG	1 cut(s)	885
SfuI	TTCGAA	1 cut(s)	152
SinI	GGWCC	1 cut(s)	976
SlaI	CTCGAG	1 cut(s)	885
SmiMI	CAYNNNNRTG	1 cut(s)	911
SmlI	CTYRAG	3 cut(s)	383, 764, 885
SmoI	CTYRAG	3 cut(s)	383, 764, 885
Sse9I	AATT	8 cut(s)	65, 91, 116, 178, 634, 873, 940, 1066
SsiI	CCGC	3 cut(s)	134, 700, 979
SspMI	CTAG	5 cut(s)	230, 495, 501, 551, 593
StyD4I	CCNGG	1 cut(s)	20
TaaI	ACNGT	2 cut(s)	86, 674
TaqI	TCGA	5 cut(s)	114, 152, 261, 433, 886
TasI	AATT	8 cut(s)	65, 91, 116, 178, 634, 873, 940, 1066
TatI	WGTACW	2 cut(s)	11, 480
TfiI	GAWTC	6 cut(s)	103, 154, 338, 575, 811, 995
Tru1I	TTAA	5 cut(s)	81, 99, 765, 842, 1065
Tru9I	TTAA	5 cut(s)	81, 99, 765, 842, 1065
TscAI	CASTG	2 cut(s)	174, 960
TseFI	GTSAC	5 cut(s)	3, 268, 395, 904, 1070
TseI	GCWGC	2 cut(s)	61, 799
Tsp45I	GTSAC	5 cut(s)	3, 268, 395, 904, 1070
TspDTI	ATGAA	6 cut(s)	98, 140, 149, 322, 744, 782
TspGWI	ACGGA	2 cut(s)	22, 740
TspRI	CASTG	2 cut(s)	174, 960
Vha464I	CTTAAG	1 cut(s)	764
VpaK11BI	GGWCC	1 cut(s)	976
VspI	ATTAAT	1 cut(s)	1065
XagI	CCTNNNNNAGG	1 cut(s)	370
XapI	RAATTY	4 cut(s)	91, 116, 178, 940
XbaI	TCTAGA	3 cut(s)	229, 500, 550
XceI	RCATGY	2 cut(s)	403, 1012
XhoI	CTCGAG	1 cut(s)	885
XmnI	GAANNNNTTC	1 cut(s)	750
XspI	CTAG	5 cut(s)	230, 495, 501, 551, 593
ZrmI	AGTACT	1 cut(s)	482
Zsp2I	ATGCAT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.