Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004854

Physical Location & Seq

Genomic Coordinates Reverse (-)

50029514 .. 50030122

Gene Structure 609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG250000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGGCAGTCGAGCTTACGCACTGCAAATGGCTGAGCTGCTTGACCCTGAAAAAGAGTACTTCTTCACCTCCACCTCCAGTTCTAAAATAACATCGCGTGATGATCATAGCTCCCCAGGACAAAAGAAGTGTCTAAATCTTGTGCGCGGATGTCAAAATTCTAATGTCTTGATCCTCGACGATATAAGAAACGCATGGACAAAGAAAAATCAGGACAATTTGATAGTAATGCAAAAATACTATTTCTTCAAATCCACTTGTCATCTGAATAATGTTACCGGTCAATCTCATGCCGAGTTAAGGACCGATGAAAGCGGTTATCTTGAACACATTCTTCGGTGTCTTAAGCGAATCCATGATATCTGGACCAACAATCCTATCGACATTGATGTAAGGCAGGTGTTAAAAATTCCTCGGAAGCGGGTGTTGAAGGGGTGTGTGATTGTTTTTAACTCTCATAACACTAATCTGCGGAAAATGGCAGAGGAGTTGGGAGCAACTTGTTCATCACGAGCGGATGCATCATCAGTCACGCATGTGGTTGCAATAAATGCTCGAACGAAGAATGATCTTCTGGCACTGAAGAACAAGTTTTTAGTCTGCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

202

Amino Acids

22.97

Weight (kDa)

9.28

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004854)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17821 FvH4_4g17830
rosa_chinensis	RchiOBHm_Chr4g0421781 RchiOBHm_Chr4g0421791 RchiOBHm_Chr4g0421881 RchiOBHm_Chr4g0421951 RchiOBHm_Chr5g0075131 RchiOBHm_Chr7g0189971
rosa_laevigata	RLG00000007651 RLG00000019705 RLG00000036532
rosa_multiflora	Rmu_co8181706.1_g000001 Rmu_sc0011516.1_g000006 Rmu_sc0030271.1_g000001 Rmu_ssc0000217.1_g000008
rosa_roxburghii	Rroxscaffold_1G00006490 Rroxscaffold_5G00364040 Rroxscaffold_7G00156710
rosa_rugosa	Rorug07G0129200
rosa_samantha	Rh2BG403800 Rh4BG238000 Rh4BG238100 Rh4BG238300 Rh4CG250000 Rh4CG250100 Rh4DG234100 Rh5DG527800 Rh6AG087100 Rh6AG514900 Rh7AG106900 Rh7DG110100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	388
Acc36I	ACCTGC	1 cut(s)	388
AccBSI	CCGCTC	1 cut(s)	515
AccII	CGCG	2 cut(s)	97, 147
AciI	CCGC	5 cut(s)	147, 315, 421, 472, 515
AclWI	GGATC	1 cut(s)	166
AcsI	RAATTY	2 cut(s)	157, 408
AcuI	CTGAAG	1 cut(s)	602
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	1 cut(s)	300
AflII	CTTAAG	1 cut(s)	344
AgeI	ACCGGT	1 cut(s)	278
AgsI	TTSAA	3 cut(s)	250, 326, 430
AjnI	CCWGG	1 cut(s)	115
AleI	CACNNNNGTG	1 cut(s)	536
AluBI	AGCT	3 cut(s)	14, 37, 111
AluI	AGCT	3 cut(s)	14, 37, 111
AlwI	GGATC	1 cut(s)	166
ApeKI	GCWGC	1 cut(s)	37
ApoI	RAATTY	2 cut(s)	157, 408
ArsI	GACNNNNNNTTYG	2 cut(s)	115, 147
AsiGI	ACCGGT	1 cut(s)	278
Asp700I	GAANNNNTTC	1 cut(s)	330
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	2 cut(s)	303, 366
AsuHPI	GGTGA	1 cut(s)	58
AvaII	GGWCC	2 cut(s)	303, 366
BauI	CACGAG	1 cut(s)	510
BbvI	GCAGC	1 cut(s)	24
BciT130I	CCWGG	1 cut(s)	117
BclI	TGATCA	1 cut(s)	103
BfrI	CTTAAG	1 cut(s)	344
BfuAI	ACCTGC	1 cut(s)	388
BisI	GCNGC	1 cut(s)	38
BlpI	GCTNAGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	39
BmcAI	AGTACT	1 cut(s)	59
Bme1390I	CCNGG	1 cut(s)	117
Bme18I	GGWCC	2 cut(s)	303, 366
BmgT120I	GGNCC	2 cut(s)	303, 366
BmrFI	CCNGG	1 cut(s)	117
BmsI	GCATC	2 cut(s)	508, 530
BpmI	CTGGAG	1 cut(s)	61
Bpu1102I	GCTNAGC	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	115, 413
BsaWI	WCCGGW	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	1 cut(s)	300
Bse118I	RCCGGY	1 cut(s)	278
Bse1I	ACTGG	1 cut(s)	78
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	2 cut(s)	115, 413
BseGI	GGATG	2 cut(s)	155, 523
BseLI	CCNNNNNNNGG	1 cut(s)	300
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	78
BseRI	GAGGAG	1 cut(s)	500
BseXI	GCAGC	1 cut(s)	24
Bsh1236I	CGCG	2 cut(s)	97, 147
BshTI	ACCGGT	1 cut(s)	278
BsiSI	CCGG	1 cut(s)	279
BslI	CCNNNNNNNGG	1 cut(s)	300
Bsp143I	GATC	3 cut(s)	103, 171, 568
Bsp1720I	GCTNAGC	1 cut(s)	33
BspACI	CCGC	5 cut(s)	147, 315, 421, 472, 515
BspCNI	CTCAG	1 cut(s)	25
BspFNI	CGCG	2 cut(s)	97, 147
BspMI	ACCTGC	1 cut(s)	388
BspPI	GGATC	1 cut(s)	166
BspTI	CTTAAG	1 cut(s)	344
BsrBI	CCGCTC	1 cut(s)	515
BsrFI	RCCGGY	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	78
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	2 cut(s)	115, 413
BssMI	GATC	3 cut(s)	103, 171, 568
BssSI	CACGAG	1 cut(s)	510
Bst2BI	CACGAG	1 cut(s)	510
Bst2UI	CCWGG	1 cut(s)	117
BstAFI	CTTAAG	1 cut(s)	344
BstAPI	GCANNNNNTGC	1 cut(s)	551
BstDEI	CTNAG	1 cut(s)	33
BstF5I	GGATG	2 cut(s)	155, 523
BstFNI	CGCG	2 cut(s)	97, 147
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	3 cut(s)	106, 174, 571
BstMBI	GATC	3 cut(s)	103, 171, 568
BstMWI	GCNNNNNNNGC	1 cut(s)	551
BstNI	CCWGG	1 cut(s)	117
BstNSI	RCATGY	1 cut(s)	539
BstSCI	CCNGG	1 cut(s)	115
BstUI	CGCG	2 cut(s)	97, 147
BstV1I	GCAGC	1 cut(s)	24
BtgZI	GCGATG	1 cut(s)	78
BtsCI	GGATG	2 cut(s)	155, 523
BtsI	GCAGTG	1 cut(s)	20
BtsIMutI	CAGTG	2 cut(s)	20, 578
BveI	ACCTGC	1 cut(s)	388
CfoI	GCGC	1 cut(s)	147
Cfr10I	RCCGGY	1 cut(s)	278
Cfr13I	GGNCC	2 cut(s)	303, 366
Csp6I	GTAC	1 cut(s)	58
CspAI	ACCGGT	1 cut(s)	278
CviAII	CATG	4 cut(s)	195, 290, 356, 536
CviJI	RGCY	4 cut(s)	14, 32, 37, 111
CviKI_1	RGCY	4 cut(s)	14, 32, 37, 111
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	3 cut(s)	105, 173, 570
DpnII	GATC	3 cut(s)	103, 171, 568
Eco32I	GATATC	1 cut(s)	361
Eco47I	GGWCC	2 cut(s)	303, 366
Eco57I	CTGAAG	1 cut(s)	602
EcoRII	CCWGG	1 cut(s)	115
EcoRV	GATATC	1 cut(s)	361
EcoT22I	ATGCAT	1 cut(s)	523
FaeI	CATG	4 cut(s)	198, 293, 359, 539
FaiI	YATR	8 cut(s)	108, 185, 196, 291, 357, 459, 537, 607
FatI	CATG	4 cut(s)	194, 289, 355, 535
FauI	CCCGC	1 cut(s)	414
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	1 cut(s)	38
FokI	GGATG	2 cut(s)	162, 530
Fsp4HI	GCNGC	1 cut(s)	38
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	1 cut(s)	38
GsuI	CTGGAG	1 cut(s)	61
HapII	CCGG	1 cut(s)	279
HhaI	GCGC	1 cut(s)	147
Hin1II	CATG	4 cut(s)	198, 293, 359, 539
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HinfI	GANTC	1 cut(s)	351
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	1 cut(s)	58
Hpy188I	TCNGA	2 cut(s)	267, 417
Hpy188III	TCNNGA	5 cut(s)	169, 212, 323, 364, 510
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	1 cut(s)	424
HpyCH4V	TGCA	4 cut(s)	25, 232, 521, 545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	551
HpyF3I	CTNAG	1 cut(s)	33
Hsp92II	CATG	4 cut(s)	198, 293, 359, 539
HspAI	GCGC	1 cut(s)	145
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	3 cut(s)	103, 171, 568
LmnI	GCTCC	2 cut(s)	116, 494
LpnPI	CCDG	9 cut(s)	60, 91, 102, 129, 197, 292, 349, 383, 560
Lsp1109I	GCAGC	1 cut(s)	24
LweI	GCATC	2 cut(s)	508, 530
MaeIII	GTNAC	2 cut(s)	274, 529
MalI	GATC	3 cut(s)	105, 173, 570
MbiI	CCGCTC	1 cut(s)	515
MboI	GATC	3 cut(s)	103, 171, 568
MboII	GAAGA	6 cut(s)	55, 238, 326, 563, 574, 595
MluCI	AATT	3 cut(s)	157, 217, 408
MnlI	CCTC	5 cut(s)	79, 85, 185, 423, 478
Mph1103I	ATGCAT	1 cut(s)	523
MroXI	GAANNNNTTC	1 cut(s)	330
MseI	TTAA	4 cut(s)	299, 345, 404, 450
MslI	CAYNNNNRTG	1 cut(s)	536
MspCI	CTTAAG	1 cut(s)	344
MspI	CCGG	1 cut(s)	279
MspR9I	CCNGG	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	117
MvnI	CGCG	2 cut(s)	97, 147
MwoI	GCNNNNNNNGC	1 cut(s)	551
NdeII	GATC	3 cut(s)	103, 171, 568
NlaIII	CATG	4 cut(s)	198, 293, 359, 539
NmeAIII	GCCGAG	1 cut(s)	319
NmuCI	GTSAC	1 cut(s)	529
NsiI	ATGCAT	1 cut(s)	523
NspI	RCATGY	1 cut(s)	539
OliI	CACNNNNGTG	1 cut(s)	536
PaqCI	CACCTGC	1 cut(s)	388
PdmI	GAANNNNTTC	1 cut(s)	330
PfeI	GAWTC	1 cut(s)	351
PinAI	ACCGGT	1 cut(s)	278
PkrI	GCNGC	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PspPI	GGNCC	2 cut(s)	303, 366
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
RseI	CAYNNNNRTG	1 cut(s)	536
SaqAI	TTAA	4 cut(s)	299, 345, 404, 450
SatI	GCNGC	1 cut(s)	38
Sau3AI	GATC	3 cut(s)	103, 171, 568
Sau96I	GGNCC	2 cut(s)	303, 366
ScaI	AGTACT	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	117
SetI	ASST	6 cut(s)	16, 39, 71, 77, 113, 402
SfaNI	GCATC	2 cut(s)	508, 530
SinI	GGWCC	2 cut(s)	303, 366
SmiMI	CAYNNNNRTG	1 cut(s)	536
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	3 cut(s)	157, 217, 408
SsiI	CCGC	5 cut(s)	147, 315, 421, 472, 515
StyD4I	CCNGG	1 cut(s)	115
TaqI	TCGA	4 cut(s)	10, 177, 381, 556
TaqII	GACCGA	1 cut(s)	320
TasI	AATT	3 cut(s)	157, 217, 408
TatI	WGTACW	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	351
Tru1I	TTAA	4 cut(s)	299, 345, 404, 450
Tru9I	TTAA	4 cut(s)	299, 345, 404, 450
TscAI	CASTG	2 cut(s)	27, 585
TseFI	GTSAC	1 cut(s)	529
TseI	GCWGC	1 cut(s)	37
Tsp45I	GTSAC	1 cut(s)	529
TspDTI	ATGAA	2 cut(s)	324, 495
TspRI	CASTG	2 cut(s)	27, 585
Vha464I	CTTAAG	1 cut(s)	344
VpaK11BI	GGWCC	2 cut(s)	303, 366
XapI	RAATTY	2 cut(s)	157, 408
XceI	RCATGY	1 cut(s)	539
XmnI	GAANNNNTTC	1 cut(s)	330
ZrmI	AGTACT	1 cut(s)	59
Zsp2I	ATGCAT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.